Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 1.7e-246 855.5 433 100.0
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 8.7e-238 826.6 433 96.3
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 7.6e-234 813.5 430 94.9
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 1.7e-233 812.4 433 94.5
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 4.6e-231 804.3 430 94.0
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 1.1e-229 799.7 430 93.0
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 1.9e-229 798.9 433 93.5
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 2.6e-226 788.5 475 85.7
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 4.2e-224 781.2 429 92.3
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 4.6e-223 777.7 474 84.6
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 3.0e-222 775.0 415 93.7
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 1.0e-217 760.0 473 83.7
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 3.0e-214 748.4 415 90.1
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 5.9e-210 734.2 442 83.9
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 1.2e-186 656.8 429 76.0
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 8.5e-185 650.6 430 74.4
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 1.9e-184 649.4 429 74.8
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 6.1e-183 644.4 429 74.6
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 8.0e-183 644.0 430 73.7
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 4.4e-181 638.3 429 73.9
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 1.3e-180 636.7 430 74.0
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 2.8e-180 635.6 429 73.4
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 2.8e-180 635.6 430 73.0
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 1.4e-179 633.3 430 73.0
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 2.4e-179 632.5 430 72.3
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 1.2e-178 630.2 430 71.4
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 2.0e-178 629.4 430 72.1
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 2.7e-178 629.0 430 71.9
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 3.5e-178 628.6 430 71.6
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 4.5e-178 628.2 430 71.4
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 5.9e-178 627.9 432 70.8
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 2.9e-177 625.5 430 72.6
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 6.6e-177 624.4 432 72.0
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 1.5e-176 623.2 432 70.4
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 1.5e-176 623.2 430 71.4
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 4.2e-176 621.7 430 70.0
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 5.5e-176 621.3 429 70.6
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 2.8e-175 619.0 430 69.8
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 8.0e-175 617.5 430 70.0
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 1.4e-174 616.7 430 70.2
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 1.8e-174 616.3 429 70.6
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 1.8e-174 616.3 432 69.9
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 2.3e-174 615.9 430 71.9
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 4.0e-174 615.1 432 70.1
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 5.2e-174 614.8 430 70.2
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 1.2e-173 613.6 431 70.8
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 2.0e-173 612.8 430 70.0
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 2.0e-173 612.8 430 70.2
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 7.5e-173 610.9 433 70.2
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 6.3e-172 607.8 430 69.1
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 1.1e-171 607.1 456 68.9
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 1.8e-171 606.3 429 69.0
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 5.4e-171 604.7 433 69.1
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 9.2e-171 604.0 430 70.0
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 1.6e-170 603.2 431 70.8
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 3.5e-170 602.1 430 68.4
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 5.9e-170 601.3 430 70.0
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 5.9e-170 601.3 429 68.3
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 1.3e-169 600.1 431 68.4
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 1.3e-169 600.1 430 69.1
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 2.9e-169 599.0 433 69.1
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 5.0e-169 598.2 429 70.4
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 5.0e-169 598.2 430 68.8
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 8.6e-169 597.4 433 68.8
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 1.1e-168 597.0 470 65.3
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 2.5e-168 595.9 432 69.0
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 9.5e-168 594.0 432 68.8
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 2.1e-167 592.8 431 68.0
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 8.0e-167 590.9 426 69.0
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 8.0e-167 590.9 430 68.4
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 8.9e-166 587.4 339 89.1
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 1.2e-165 587.0 430 68.1
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 6.4e-164 581.3 428 67.5
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 5.4e-163 578.2 426 66.7
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 4.6e-162 575.1 433 67.7
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 3.0e-161 572.4 434 66.8
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 1.9e-160 569.7 435 67.4
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.1e-158 563.9 429 65.3
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 1.4e-158 563.5 510 58.4
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 2.0e-157 559.7 341 84.5
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 7.5e-157 557.8 520 56.5
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 2.4e-155 552.7 430 63.7
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 9.2e-155 550.8 430 65.6
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 3.5e-154 548.9 430 65.1
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 1.0e-153 547.4 432 65.3
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 1.7e-153 546.6 430 64.7
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 2.1e-151 539.7 364 73.4
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 1.5e-149 533.5 430 63.7
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 4.9e-148 528.5 444 61.0
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.9e-147 526.6 432 63.7
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 1.3e-145 520.4 380 68.4
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 2.3e-145 519.6 421 62.7
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 5.1e-145 518.5 380 68.2
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 1.4e-142 510.4 379 67.3
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 2.4e-142 509.6 382 68.8
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 3.1e-142 509.2 420 64.3
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 4.0e-142 508.8 376 68.1
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 9.6e-136 487.6 448 58.9
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 9.6e-136 487.6 362 68.5
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 2.0e-133 479.9 726 40.6
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 1.4e-131 473.8 433 58.0
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 5.8e-125 451.8 433 53.3
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 3.2e-123 446.0 436 51.4
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 9.3e-123 444.5 694 40.3
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.3e-119 434.1 316 69.0
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 1.0e-116 424.5 298 71.1
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 2.3e-113 413.3 431 49.0
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 2.5e-112 409.8 432 50.0
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 7.6e-109 398.3 283 69.3
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 1.2e-98 364.4 350 52.0
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 1.0e-89 334.7 221 74.2
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 6.3e-79 298.9 219 68.9
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.4e-78 297.7 247 63.2
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 8.0e-66 255.4 236 60.2
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 4.9e-63 246.1 161 75.8
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 5.4e-62 242.7 412 35.0
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 5.5e-59 232.6 283 48.4
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 6.1e-58 229.2 215 59.1
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 2.0e-56 224.2 159 69.8
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 3.2e-54 216.9 430 36.5
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.3e-52 211.5 133 79.7
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.2e-50 204.9 131 72.5
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 8.0e-50 202.2 200 60.0
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 3.1e-49 200.3 193 61.1
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 6.6e-44 182.6 142 62.7
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 3.6e-42 176.8 140 62.9
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.3e-36 157.5 149 51.7
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 2.8e-34 150.6 317 32.5
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 4.4e-24 116.7 120 50.0
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 2.4e-22 110.9 146 47.9
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 3.5e-21 107.1 94 57.4
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 3.9e-20 103.6 52 88.5
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 1.1e-19 102.1 54 94.4
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 1.4e-17 95.1 79 57.0
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 2.9e-15 87.4 68 61.8
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 3.2e-14 84.0 68 60.3
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 7.1e-14 82.8 68 60.3
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 2.8e-10 70.9 85 40.0
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 3.6e-10 70.5 43 76.7
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 3.1e-09 67.4 66 51.5
MD00G1001200 Malus domestica HOM05D005218 ORTHO05D006657 2.6e-08 64.3 38 76.3
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 8.4e-07 59.3 46 56.5


User provided reference genes

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