Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g40620 Schrenkiella parvula HOM05D006801 ORTHO05D008490 3.8e-93 344.7 163 100.0
Carub.0006s0052 Capsella rubella HOM05D006801 ORTHO05D008490 3.1e-87 325.1 163 91.4
BcaC06g31972 Brassica carinata HOM05D006801 ORTHO05D008490 1.2e-86 323.2 163 92.0
BraA10t45402Z Brassica rapa HOM05D006801 ORTHO05D008490 2.0e-86 322.4 163 92.0
CARHR211660 Cardamine hirsuta HOM05D006801 ORTHO05D008490 7.1e-84 313.9 156 91.7
AL6G10870 Arabidopsis lyrata HOM05D006801 ORTHO05D008490 1.8e-82 309.3 163 86.5
AT5G01300 Arabidopsis thaliana HOM05D006801 ORTHO05D008490 6.7e-82 307.4 163 85.9
Aa31LG1G22920 Aethionema arabicum HOM05D006801 ORTHO05D008490 2.2e-77 292.4 167 83.2
THA.LOC104816206 Tarenaya hassleriana HOM05D006801 ORTHO05D008490 1.0e-74 283.5 161 78.9
C09p74590 Brassica napus HOM05D005640 ORTHO05D007124 1.3e-74 283.1 138 94.2
A10p33680 Brassica napus HOM05D005640 ORTHO05D007124 1.1e-73 280.0 138 93.5
Thhalv10014869m.g Eutrema salsugineum HOM05D006801 ORTHO05D008490 4.3e-73 278.1 166 81.3
Ciclev10012687m.g Citrus clementina HOM05D006801 ORTHO05D008490 1.3e-69 266.5 165 73.9
Manes.09G108600 Manihot esculenta HOM05D006801 ORTHO05D008490 1.4e-68 263.1 162 72.2
TWI74G0346 Tripterygium wilfordii HOM05D006801 ORTHO05D008490 1.2e-67 260.0 161 73.3
QL07p034435 Quercus lobata HOM05D006801 ORTHO05D008490 1.6e-67 259.6 165 70.3
Gohir.A04G094200 Gossypium hirsutum HOM05D006801 ORTHO05D008490 2.7e-67 258.8 160 71.2
Eucgr.A00595 Eucalyptus grandis HOM05D006801 ORTHO05D008490 6.1e-67 257.7 160 73.1
TAR140G0003 Trochodendron aralioides HOM05D006801 ORTHO05D008490 1.0e-66 256.9 165 69.7
TAR623G0428 Trochodendron aralioides HOM05D006801 ORTHO05D008490 1.0e-66 256.9 165 69.7
COL.COLO4_14495 Corchorus olitorius HOM05D006801 ORTHO05D008490 1.8e-66 256.1 165 71.5
Gohir.D04G133600 Gossypium hirsutum HOM05D006801 ORTHO05D008490 1.8e-66 256.1 157 72.0
Gorai.012G117400 Gossypium raimondii HOM05D006801 ORTHO05D008490 1.8e-66 256.1 157 72.0
Haze_21041 Corylus avellana HOM05D006801 ORTHO05D008490 3.0e-66 255.4 165 69.1
CiPaw.10G158900 Carya illinoinensis HOM05D006801 ORTHO05D008490 3.9e-66 255.0 166 69.3
arahy.Tifrunner.gnm1.ann1.711CF1 Arachis hypogaea HOM05D006801 ORTHO05D008490 6.7e-66 254.2 159 72.3
Prupe.6G281700 Prunus persica HOM05D006801 ORTHO05D008490 6.7e-66 254.2 164 68.9
Cpa.g.sc120.28 Carica papaya HOM05D006801 ORTHO05D008490 8.8e-66 253.8 163 70.6
Lj2A70T41 Lonicera japonica HOM05D006801 ORTHO05D008490 1.1e-65 253.4 159 73.0
arahy.Tifrunner.gnm1.ann1.SWS1EB Arachis hypogaea HOM05D006801 ORTHO05D008490 2.0e-65 252.7 159 72.3
Thecc.05G010700 Theobroma cacao HOM05D006801 ORTHO05D008490 2.5e-65 252.3 160 70.6
Atru.chr8.2288 Acer truncatum HOM05D006801 ORTHO05D008490 4.3e-65 251.5 160 71.9
Peaxi162Scf01132g00023 Petunia axillaris HOM05D006801 ORTHO05D008490 4.3e-65 251.5 164 67.7
Lsat_1_v5_gn_9_35501 Lactuca sativa HOM05D006801 ORTHO05D008490 7.4e-65 250.8 164 67.7
MD04G1161900 Malus domestica HOM05D006801 ORTHO05D008490 9.7e-65 250.4 164 68.3
HanXRQChr10g0291491 Helianthus annuus HOM05D006801 ORTHO05D008490 2.2e-64 249.2 164 69.5
Nitab4.5_0005348g0010 Nicotiana tabacum HOM05D006801 ORTHO05D008490 3.7e-64 248.4 164 66.5
Gorai.002G264900 Gossypium raimondii HOM05D006801 ORTHO05D008490 6.3e-64 247.7 162 68.5
ClCG10G022380 Citrullus lanatus HOM05D006801 ORTHO05D008490 1.4e-63 246.5 163 68.7
GSVIVG01030332001 Vitis vinifera HOM05D006801 ORTHO05D008490 2.4e-63 245.7 165 66.7
Gohir.A01G228300 Gossypium hirsutum HOM05D006801 ORTHO05D008490 4.1e-63 245.0 162 67.3
CAN.G41.4 Capsicum annuum HOM05D006801 ORTHO05D008490 1.2e-62 243.4 165 65.5
Medtr4g017650 Medicago truncatula HOM05D006801 ORTHO05D008490 1.2e-62 243.4 163 68.7
AUR62030790 Chenopodium quinoa HOM05D006801 ORTHO05D008490 2.6e-62 242.3 164 68.3
Cc06_g01030 Coffea canephora HOM05D006801 ORTHO05D008490 4.5e-62 241.5 162 66.0
CsaV3_3G033500 Cucumis sativus L. HOM05D006801 ORTHO05D008490 4.5e-62 241.5 161 67.1
Psat7g243680 Pisum sativum HOM05D006801 ORTHO05D008490 4.5e-62 241.5 163 67.5
PGR031G3867 Punica granatum HOM05D006801 ORTHO05D008490 4.5e-62 241.5 161 67.1
Cfa017164 Carpinus fangiana HOM05D006801 ORTHO05D008490 5.9e-62 241.1 165 66.7
ECA247G2271 Erigeron canadensis HOM05D006801 ORTHO05D008490 7.7e-62 240.7 164 66.5
Lj3g0017579 Lotus japonicus HOM05D006801 ORTHO05D008490 1.0e-61 240.4 163 68.1
CANSAT35G1909 Cannabis sativa HOM05D006801 ORTHO05D008490 1.3e-61 240.0 161 68.3
RcHm_v2.0_Chr3g0462371 Rosa chinensis HOM05D006801 ORTHO05D008490 1.3e-61 240.0 161 68.9
DCAR_028865 Daucus carota HOM05D006801 ORTHO05D008490 1.7e-61 239.6 164 67.1
AUR62030503 Chenopodium quinoa HOM05D006801 ORTHO05D008490 2.2e-61 239.2 164 67.7
FvH4_6g11060 Fragaria vesca HOM05D006801 ORTHO05D008490 2.9e-61 238.8 163 68.1
FAN14G3154 Fragaria x ananassa HOM05D006801 ORTHO05D008490 2.9e-61 238.8 163 68.1
Potri.016G121000 Populus trichocarpa HOM05D006801 ORTHO05D008490 2.9e-61 238.8 162 67.3
MELO3C009141.2 Cucumis melo HOM05D006801 ORTHO05D008490 5.0e-61 238.0 161 66.5
Ca_20198_v3 Cicer arietinum L. HOM05D006801 ORTHO05D008490 1.1e-60 236.9 163 66.3
Aqoxy4G02453 Aquilegia oxysepala HOM05D006801 ORTHO05D008490 1.4e-60 236.5 166 65.7
TPR.G8225 Trifolium pratense HOM05D006801 ORTHO05D008490 2.5e-60 235.7 158 68.4
PSO170G1048 Papaver somniferum HOM05D006801 ORTHO05D008490 5.5e-60 234.6 165 64.8
Lalb_Chr12g0207061 Lupinus albus HOM05D006801 ORTHO05D008490 1.2e-59 233.4 158 68.4
EL10Ac5g12521 Beta vulgaris HOM05D006801 ORTHO05D008490 2.7e-59 232.3 164 65.9
Phvul.010G073500 Phaseolus vulgaris HOM05D006801 ORTHO05D008490 4.7e-59 231.5 162 66.7
MSTRG.18989 Avicennia marina HOM05D006801 ORTHO05D008490 6.1e-59 231.1 159 65.4
ECA247G3879 Erigeron canadensis HOM05D006801 ORTHO05D008490 2.3e-58 229.2 164 64.0
Oeu033563.1 Olea europaea HOM05D006801 ORTHO05D008490 2.3e-58 229.2 159 65.4
Sc01g0005740 Simmondsia chinensis HOM05D006801 ORTHO05D008490 3.0e-58 228.8 157 63.7
Nn2g13198 Nelumbo nucifera HOM05D006801 ORTHO05D008490 6.7e-58 227.6 166 65.7
VMungo0331G1898 Vigna mungo HOM05D006801 ORTHO05D008490 1.5e-57 226.5 162 65.4
Solyc09g005060.3 Solanum lycopersicum HOM05D006801 ORTHO05D008490 2.0e-57 226.1 160 61.2
Ah.12g058900 Amaranthus hybridus HOM05D006801 ORTHO05D008490 2.6e-57 225.7 163 66.9
Os05g0468800 Oryza sativa ssp. japonica HOM05D006801 ORTHO05D008490 9.7e-57 223.8 161 64.6
Sopen09g001050 Solanum pennellii HOM05D006801 ORTHO05D008490 9.7e-57 223.8 160 60.6
Migut.J00126 Erythranthe guttata HOM05D006801 ORTHO05D008490 3.1e-55 218.8 160 61.2
PSO729G0120 Papaver somniferum HOM05D006801 ORTHO05D008490 3.1e-55 218.8 168 61.9
Glyma.03G052200 Glycine max HOM05D006801 ORTHO05D008490 5.3e-55 218.0 164 62.8
SalBow5G2624 Salvia bowleyana HOM05D006801 ORTHO05D008490 5.3e-55 218.0 161 62.7
SalBow5G4248 Salvia bowleyana HOM05D006801 ORTHO05D008490 7.0e-55 217.6 161 62.7
Glyma.01G123100 Glycine max HOM05D006801 ORTHO05D008490 2.0e-54 216.1 164 62.2
SGA_v2.0_scaffold85G26712 Striga asiatica HOM05D000053 ORTHO05D008490 5.0e-53 211.5 159 62.9
CSS0028234 Camellia sinensis var. sinensis HOM05D006801 ORTHO05D008490 8.5e-53 210.7 161 61.5
Lalb_Chr07g0191271 Lupinus albus HOM05D006801 ORTHO05D008490 7.2e-52 207.6 140 67.9
PSO729G0014 Papaver somniferum HOM05D006801 ORTHO05D008490 9.4e-52 207.2 165 60.0
PSO724G0025 Papaver somniferum HOM05D006801 ORTHO05D008490 1.6e-51 206.5 165 59.4
Sed0001867 Sechium edule HOM05D006801 ORTHO05D008490 2.1e-51 206.1 164 60.4
FAN09G2180 Fragaria x ananassa HOM05D006801 ORTHO05D008490 8.0e-51 204.1 143 67.1
unitig_26.g9083 Utricularia gibba HOM05D006801 ORTHO05D008490 8.0e-51 204.1 155 60.6
MBI15_g30116_MAGBIO Magnolia biondii HOM05D006801 ORTHO05D008490 1.1e-49 200.3 139 69.8
HPP92_026978 Vanilla planifolia HOM05D006801 ORTHO05D008490 6.3e-48 194.5 157 58.0
VMungo0331G1841 Vigna mungo HOM05D006801 ORTHO05D008490 1.1e-47 193.7 165 60.6
Zm00001eb351790 Zea mays HOM05D006801 ORTHO05D008490 1.1e-47 193.7 157 58.6
HPP92_015418 Vanilla planifolia HOM05D006801 ORTHO05D008490 3.5e-46 188.7 157 56.7
Nitab4.5_0000539g0120 Nicotiana tabacum HOM05D006801 ORTHO05D008490 5.9e-46 188.0 121 67.8
SEGI_01937 Sequoiadendron giganteum HOM05D006801 ORTHO05D008490 5.9e-46 188.0 155 54.2
Medtr4g017680 Medicago truncatula HOM05D006801 ORTHO05D008490 2.2e-45 186.0 163 57.7
Lj3g0026162 Lotus japonicus HOM05D006801 ORTHO05D008490 2.5e-44 182.6 167 58.1
Lalb_Chr12g0207091 Lupinus albus HOM05D006801 ORTHO05D008490 2.7e-43 179.1 165 55.2
arahy.Tifrunner.gnm1.ann1.M4T34S Arachis hypogaea HOM05D006801 ORTHO05D008490 2.3e-42 176.0 172 54.1
Dinv18520 Davidia involucrata HOM05D006801 ORTHO05D008490 1.2e-41 173.7 127 64.6
Mapoly0003s0041 Marchantia polymorpha HOM05D006801 ORTHO05D008490 1.1e-39 167.2 160 47.5
Gohir.D01G218200 Gossypium hirsutum HOM05D006801 ORTHO05D008490 1.4e-39 166.8 114 65.8
SMO347G0428 Selaginella moellendorffii HOM05D006801 ORTHO05D008490 1.2e-38 163.7 158 53.2
Pp3c1_41520 Physcomitrium patens HOM05D006801 ORTHO05D008490 5.9e-38 161.4 156 48.1
CSS0011838 Camellia sinensis var. sinensis HOM05D006801 ORTHO05D008490 3.2e-36 155.6 164 48.8
CBR_g39562 Chara braunii HOM05D006801 ORTHO05D008490 1.2e-33 147.1 159 43.4
CDE08G0176 Ceratophyllum demersum HOM05D006801 ORTHO05D008490 5.7e-33 144.8 151 49.0
AagrBONN_evm.TU.Sc2ySwM_228.3494 Anthoceros agrestis HOM05D006801 ORTHO05D008490 8.3e-32 141.0 143 49.7
Pp3c21_8040 Physcomitrium patens HOM05D006801 ORTHO05D008490 3.5e-30 135.6 164 40.9
arahy.Tifrunner.gnm1.ann1.1WC97K Arachis hypogaea HOM05D006801 ORTHO05D008490 1.9e-28 129.8 131 54.2
Hma1.2p1_0501F.1_g167640 Hydrangea macrophylla HOM05D006801 ORTHO05D008490 1.2e-25 120.6 98 57.1
Ca_20197_v3 Cicer arietinum L. HOM05D006801 ORTHO05D008490 2.6e-25 119.4 159 43.4
PGSC0003DMG400006267 Solanum tuberosum HOM05D006801 ORTHO05D008490 6.3e-24 114.8 83 59.0
ATR0681G271 Amborella trichopoda HOM05D006801 ORTHO05D008490 1.2e-22 110.5 84 64.3
Prupe.1G005200 Prunus persica HOM05D006801 ORTHO05D008490 1.0e-18 97.4 149 38.9
ATR0681G235 Amborella trichopoda HOM05D006801 ORTHO05D008490 7.5e-17 91.3 51 76.5
Actinidia20750 Actinidia chinensis HOM05D006801 ORTHO05D008490 5.6e-12 75.1 116 38.8
FAN05G3081 Fragaria x ananassa HOM05D000734 ORTHO05D002223 2.6e-09 66.2 43 62.8


User provided reference genes

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