Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 6.4e-210 733.8 364 100.0
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 1.7e-181 639.4 367 89.4
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 4.8e-181 637.9 365 88.5
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 1.2e-179 633.3 371 87.1
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 7.7e-179 630.6 365 88.2
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 6.1e-176 620.9 367 87.2
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 1.5e-174 616.3 329 93.6
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 8.2e-173 610.5 370 84.9
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 1.2e-171 606.7 363 86.2
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 5.9e-171 604.4 363 86.0
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 4.2e-169 598.2 374 84.8
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 3.7e-157 558.5 395 76.7
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 1.6e-155 553.1 359 82.7
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 2.0e-155 552.7 370 78.9
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 5.1e-130 468.4 369 72.9
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 7.6e-102 374.8 491 49.3
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 2.9e-101 372.9 365 57.8
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 4.6e-99 365.5 494 47.0
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 7.9e-99 364.8 360 57.2
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 2.3e-98 363.2 360 56.7
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 4.3e-97 359.0 369 57.2
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 5.6e-97 358.6 489 46.2
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 1.3e-96 357.5 492 46.5
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 1.3e-96 357.5 399 54.4
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 2.1e-96 356.7 479 47.0
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 2.8e-96 356.3 477 47.8
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 2.8e-96 356.3 384 53.9
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 3.7e-96 355.9 380 54.7
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 4.8e-96 355.5 384 53.1
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 1.4e-95 354.0 390 52.1
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 3.1e-95 352.8 502 46.0
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 9.0e-95 351.3 409 52.1
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 2.0e-94 350.1 399 52.9
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 4.5e-94 349.0 341 56.6
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 2.9e-93 346.3 367 55.3
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 4.9e-93 345.5 374 53.2
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 6.4e-93 345.1 400 51.5
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 1.4e-92 344.0 361 54.8
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 3.2e-92 342.8 377 55.2
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 1.6e-91 340.5 397 52.9
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 2.1e-91 340.1 405 53.3
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 2.7e-91 339.7 490 46.3
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 2.7e-91 339.7 368 54.1
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 3.5e-91 339.3 381 52.5
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 4.6e-91 339.0 380 54.2
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 7.9e-91 338.2 378 50.8
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 7.9e-91 338.2 399 52.9
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 7.9e-91 338.2 399 52.9
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 7.9e-91 338.2 399 52.9
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 1.3e-90 337.4 381 53.5
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 1.5e-89 334.0 483 46.6
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.5e-89 334.0 401 52.1
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 4.3e-89 332.4 399 52.6
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 5.7e-89 332.0 382 52.6
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 2.8e-88 329.7 378 51.1
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 2.8e-88 329.7 451 46.1
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 8.2e-88 328.2 365 53.7
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 8.2e-88 328.2 403 48.9
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 1.4e-87 327.4 402 51.0
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 9.0e-87 324.7 379 50.9
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 1.5e-86 323.9 398 49.7
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 2.6e-86 323.2 380 52.1
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 3.4e-86 322.8 440 46.4
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 7.6e-86 321.6 445 46.5
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 7.6e-86 321.6 333 56.2
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 1.3e-85 320.9 442 47.3
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 1.3e-85 320.9 440 45.5
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 1.3e-85 320.9 495 44.4
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 4.9e-85 318.9 412 48.3
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 1.1e-84 317.8 405 47.7
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 3.2e-84 316.2 439 45.1
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 5.5e-84 315.5 412 48.1
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 1.2e-83 314.3 430 45.3
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 1.6e-83 313.9 379 49.6
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 6.1e-83 312.0 390 49.5
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 6.7e-82 308.5 381 49.6
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 2.5e-81 306.6 373 50.9
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 4.3e-81 305.8 443 44.5
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 5.7e-81 305.4 458 43.2
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 5.7e-81 305.4 379 49.3
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 9.7e-81 304.7 350 52.0
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 1.3e-80 304.3 406 49.8
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 1.6e-80 303.9 392 46.2
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 1.1e-79 301.2 398 49.7
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 2.4e-79 300.1 392 49.0
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 3.1e-79 299.7 446 43.5
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 4.1e-79 299.3 399 47.9
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 4.1e-79 299.3 387 49.1
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 4.1e-79 299.3 391 47.8
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 1.7e-77 293.9 398 47.2
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 1.7e-77 293.9 385 50.4
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 1.7e-77 293.9 418 44.7
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 2.2e-77 293.5 387 47.5
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 1.6e-75 287.3 372 48.4
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 2.1e-75 287.0 393 46.6
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 2.7e-75 286.6 382 47.4
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 1.5e-73 280.8 418 44.0
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 2.5e-73 280.0 397 47.4
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 3.3e-73 279.6 360 50.3
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 2.4e-71 273.5 357 48.2
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 1.2e-70 271.2 458 41.3
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 8.5e-69 265.0 381 47.2
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 1.4e-66 257.7 412 41.5
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 3.0e-66 256.5 337 46.6
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 6.7e-66 255.4 377 44.0
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 1.3e-64 251.1 357 44.5
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 8.2e-64 248.4 366 42.9
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 5.9e-62 242.3 351 45.6
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 5.5e-60 235.7 373 42.6
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 9.4e-60 235.0 275 52.0
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 1.2e-59 234.6 363 42.4
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 1.2e-59 234.6 435 41.6
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 1.5e-57 227.6 310 47.1
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 2.9e-53 213.4 321 47.4
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 5.5e-52 209.1 222 51.8
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 2.1e-51 207.2 366 41.8
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 1.6e-46 191.0 396 38.4
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 2.2e-45 187.2 362 38.4
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 4.7e-43 179.5 244 43.4
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 2.8e-40 170.2 328 40.5
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 5.9e-38 162.5 109 72.5
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 6.1e-35 152.5 228 40.4
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 1.0e-34 151.8 164 45.1
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 3.4e-33 146.7 283 39.6
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 4.4e-33 146.4 305 33.1
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 4.9e-32 142.9 275 39.3
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 1.1e-31 141.7 330 36.1
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 5.9e-30 136.0 92 69.6
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.6e-27 127.9 229 37.1
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 2.8e-27 127.1 263 38.8
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 1.4e-26 124.8 112 50.0
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.5e-25 121.3 123 53.7
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 6.6e-21 105.9 336 31.8
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 1.6e-19 101.3 260 35.8
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 5.2e-18 96.3 68 67.6
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 7.3e-12 75.9 73 53.4
RcHm_v2.0_Chr3g0492291 Rosa chinensis HOM05D005357 ORTHO05D006354 3.7e-08 63.5 49 69.4
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 1.6e-06 58.2 127 37.0


User provided reference genes

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