Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g40290 Schrenkiella parvula HOM05D003692 ORTHO05D004295 7.6e-49 196.8 98 100.0
CARHR211210 Cardamine hirsuta HOM05D003692 ORTHO05D004295 1.1e-42 176.4 93 92.5
AL6G11380 Arabidopsis lyrata HOM05D003692 ORTHO05D004295 6.9e-42 173.7 94 92.6
THA.LOC104816257 Tarenaya hassleriana HOM05D003692 ORTHO05D004295 2.0e-41 172.2 94 91.5
AT5G02150 Arabidopsis thaliana HOM05D003692 ORTHO05D004295 2.6e-41 171.8 94 92.6
Thhalv10014140m.g Eutrema salsugineum HOM05D003692 ORTHO05D004295 5.9e-41 170.6 94 91.5
Aa31LG3G1840 Aethionema arabicum HOM05D003692 ORTHO05D004295 5.0e-40 167.5 94 88.3
Carub.0006s0099 Capsella rubella HOM05D003692 ORTHO05D004295 1.1e-39 166.4 94 88.3
C03p43660 Brassica napus HOM05D003692 ORTHO05D004295 1.4e-39 166.0 94 89.4
Thhalv10020978m.g Eutrema salsugineum HOM05D003692 ORTHO05D004295 1.4e-39 166.0 94 89.4
BcaB03g11607 Brassica carinata HOM05D003692 ORTHO05D004295 1.9e-39 165.6 94 89.4
AT3G09350 Arabidopsis thaliana HOM05D003692 ORTHO05D004295 2.5e-39 165.2 94 88.3
C05p58660 Brassica napus HOM05D003692 ORTHO05D004295 2.5e-39 165.2 94 89.4
CARHR083710 Cardamine hirsuta HOM05D003692 ORTHO05D004295 2.5e-39 165.2 94 88.3
AL3G20500 Arabidopsis lyrata HOM05D003692 ORTHO05D004295 3.2e-39 164.9 94 87.2
A05p39620 Brassica napus HOM05D002396 ORTHO05D004295 4.2e-39 164.5 94 88.3
BolC5t34516H Brassica oleracea HOM05D003692 ORTHO05D004295 4.2e-39 164.5 94 88.3
BcaC01g04230 Brassica carinata HOM05D003692 ORTHO05D004295 7.2e-39 163.7 94 88.3
BolC3t16634H Brassica oleracea HOM05D003692 ORTHO05D004295 7.2e-39 163.7 94 88.3
BcaC05g29662 Brassica carinata HOM05D003692 ORTHO05D004295 9.4e-39 163.3 94 87.2
Carub.0003s0846 Capsella rubella HOM05D003692 ORTHO05D004295 9.4e-39 163.3 94 86.2
Sp3g07730 Schrenkiella parvula HOM05D003692 ORTHO05D004295 9.4e-39 163.3 94 88.3
BraA05t22745Z Brassica rapa HOM05D003692 ORTHO05D004295 1.2e-38 162.9 94 87.2
BcaC05g29519 Brassica carinata HOM05D003692 ORTHO05D004295 1.6e-38 162.5 94 86.2
A03p36010 Brassica napus HOM05D003692 ORTHO05D004295 7.9e-38 160.2 94 87.2
BraA03t12773Z Brassica rapa HOM05D003692 ORTHO05D004295 7.9e-38 160.2 94 87.2
Ciclev10011911m.g Citrus clementina HOM05D003692 ORTHO05D004295 3.0e-37 158.3 94 83.0
ClCG04G008060 Citrullus lanatus HOM05D003692 ORTHO05D004295 3.9e-37 157.9 96 80.2
Prupe.6G258500 Prunus persica HOM05D003692 ORTHO05D004295 5.1e-37 157.5 94 83.0
CiPaw.09G195400 Carya illinoinensis HOM05D003692 ORTHO05D004295 1.1e-36 156.4 94 83.0
Nitab4.5_0003394g0020 Nicotiana tabacum HOM05D003692 ORTHO05D004295 1.1e-36 156.4 94 83.0
Sabra06G0067100 Salix brachista HOM05D003692 ORTHO05D004295 2.0e-36 155.6 96 81.2
Nitab4.5_0000705g0070 Nicotiana tabacum HOM05D003692 ORTHO05D004295 4.3e-36 154.5 94 80.9
MELO3C003143.2 Cucumis melo HOM05D003692 ORTHO05D004295 5.7e-36 154.1 94 80.9
Glyma.01G103200 Glycine max HOM05D003692 ORTHO05D004295 5.7e-36 154.1 94 79.8
arahy.Tifrunner.gnm1.ann1.R5ZI8K Arachis hypogaea HOM05D003692 ORTHO05D004295 7.4e-36 153.7 94 79.8
COL.COLO4_14767 Corchorus olitorius HOM05D003692 ORTHO05D004295 7.4e-36 153.7 94 80.9
CsaV3_4G025150 Cucumis sativus L. HOM05D003692 ORTHO05D004295 7.4e-36 153.7 94 79.8
Atru.chr8.2010 Acer truncatum HOM05D003692 ORTHO05D004295 9.7e-36 153.3 94 79.8
Cc06_g02380 Coffea canephora HOM05D003692 ORTHO05D004295 9.7e-36 153.3 94 79.8
Gohir.D04G122300 Gossypium hirsutum HOM05D003692 ORTHO05D004295 9.7e-36 153.3 94 79.8
Gorai.012G105200 Gossypium raimondii HOM05D003692 ORTHO05D004295 9.7e-36 153.3 94 79.8
Lj3g0027938 Lotus japonicus HOM05D003692 ORTHO05D004295 9.7e-36 153.3 88 84.1
MD04G1131900 Malus domestica HOM05D003692 ORTHO05D004295 1.3e-35 152.9 91 81.3
Potri.016G100500 Populus trichocarpa HOM05D003692 ORTHO05D004295 1.3e-35 152.9 94 78.7
DCAR_012112 Daucus carota HOM05D003692 ORTHO05D004295 1.7e-35 152.5 94 77.7
Duzib128G0550 Durio zibethinus HOM05D003692 ORTHO05D004295 1.7e-35 152.5 94 78.7
arahy.Tifrunner.gnm1.ann1.C3169U Arachis hypogaea HOM05D003692 ORTHO05D004295 2.2e-35 152.1 94 78.7
Cfa017343 Carpinus fangiana HOM05D003692 ORTHO05D004295 2.2e-35 152.1 94 78.7
MD12G1145000 Malus domestica HOM05D003692 ORTHO05D004295 2.2e-35 152.1 91 80.2
CAN.G397.48 Capsicum annuum HOM05D003692 ORTHO05D004295 2.8e-35 151.8 94 80.9
Ca_11500_v3 Cicer arietinum L. HOM05D003692 ORTHO05D004295 3.7e-35 151.4 94 79.8
Zm00001eb062800 Zea mays HOM05D003692 ORTHO05D004295 3.7e-35 151.4 94 75.5
QL07p030140 Quercus lobata HOM05D003692 ORTHO05D004295 4.8e-35 151.0 94 79.8
QL07p030873 Quercus lobata HOM05D003692 ORTHO05D004295 4.8e-35 151.0 94 79.8
MSTRG.19074 Avicennia marina HOM05D003692 ORTHO05D004295 6.3e-35 150.6 94 78.7
Haze_20825 Corylus avellana HOM05D003692 ORTHO05D004295 6.3e-35 150.6 94 78.7
Lalb_Chr07g0192991 Lupinus albus HOM05D003692 ORTHO05D004295 6.3e-35 150.6 94 77.7
Rhsim05G0194700 Rhododendron simsii HOM05D003692 ORTHO05D004295 6.3e-35 150.6 96 78.1
Glyma.03G070400 Glycine max HOM05D003692 ORTHO05D004295 8.2e-35 150.2 94 77.7
Hma1.2p1_0877F.1_g231720 Hydrangea macrophylla HOM05D003692 ORTHO05D004295 8.2e-35 150.2 89 80.9
Lalb_Chr12g0209541 Lupinus albus HOM05D003692 ORTHO05D004295 8.2e-35 150.2 94 76.6
GSVIVG01034132001 Vitis vinifera HOM05D003692 ORTHO05D004295 8.2e-35 150.2 94 79.8
Solyc09g011030.3 Solanum lycopersicum HOM05D003692 ORTHO05D004295 1.1e-34 149.8 95 80.0
PGSC0003DMG400008824 Solanum tuberosum HOM05D003692 ORTHO05D004295 1.1e-34 149.8 95 80.0
Thecc.05G036000 Theobroma cacao HOM05D003692 ORTHO05D004295 1.1e-34 149.8 94 78.7
Ah.12g059970 Amaranthus hybridus HOM05D003692 ORTHO05D004295 1.4e-34 149.4 88 79.5
Psat7g237280 Pisum sativum HOM05D003692 ORTHO05D004295 1.4e-34 149.4 94 77.7
CAN.G947.5 Capsicum annuum HOM05D003692 ORTHO05D004295 1.8e-34 149.1 95 81.1
Gohir.A04G083600 Gossypium hirsutum HOM05D003692 ORTHO05D004295 1.8e-34 149.1 94 77.7
Sopen09g005760 Solanum pennellii HOM05D003692 ORTHO05D004295 1.8e-34 149.1 95 80.0
TWI38G1706 Tripterygium wilfordii HOM05D003692 ORTHO05D004295 1.8e-34 149.1 94 78.7
Peaxi162Scf00527g00735 Petunia axillaris HOM05D003692 ORTHO05D004295 2.4e-34 148.7 95 80.0
Potri.006G088000 Populus trichocarpa HOM05D003692 ORTHO05D004295 2.4e-34 148.7 94 78.7
Oeu006893.1 Olea europaea HOM05D003692 ORTHO05D004295 3.1e-34 148.3 90 81.1
Hund29077 Selenicereus undatus HOM05D003692 ORTHO05D004295 3.1e-34 148.3 90 76.7
CANSAT35G0909 Cannabis sativa HOM05D003692 ORTHO05D004295 6.9e-34 147.1 94 77.7
RcHm_v2.0_Chr3g0462931 Rosa chinensis HOM05D003692 ORTHO05D004295 1.5e-33 146.0 94 77.7
PGR031G2878 Punica granatum HOM05D003692 ORTHO05D004295 2.0e-33 145.6 94 74.5
HanXRQChr01g0003311 Helianthus annuus HOM05D003692 ORTHO05D004295 2.6e-33 145.2 94 75.5
RcHm_v2.0_Chr7g0180681 Rosa chinensis HOM05D003692 ORTHO05D004295 2.6e-33 145.2 90 78.9
Sed0012536 Sechium edule HOM05D003692 ORTHO05D004295 2.6e-33 145.2 94 76.6
Actinidia26484 Actinidia chinensis HOM05D003692 ORTHO05D004295 3.4e-33 144.8 94 74.5
EL10As1g23134 Beta vulgaris HOM05D003692 ORTHO05D004295 3.4e-33 144.8 88 76.1
FAN08G2733 Fragaria x ananassa HOM05D003692 ORTHO05D004295 3.4e-33 144.8 90 75.6
Cpa.g.sc40.66 Carica papaya HOM05D003692 ORTHO05D004295 4.5e-33 144.4 94 75.5
Lj2A91G57 Lonicera japonica HOM05D003692 ORTHO05D004295 4.5e-33 144.4 94 73.4
SGA_v2.0_scaffold126G33762 Striga asiatica HOM05D003692 ORTHO05D004295 4.5e-33 144.4 94 74.5
Eucgr.A01287 Eucalyptus grandis HOM05D003692 ORTHO05D004295 5.9e-33 144.1 94 73.4
Hund07758 Selenicereus undatus HOM05D003692 ORTHO05D004295 5.9e-33 144.1 88 76.1
SGA_v2.0_scaffold75G24963 Striga asiatica HOM05D003692 ORTHO05D004295 5.9e-33 144.1 94 74.5
TAR369G0528 Trochodendron aralioides HOM05D003692 ORTHO05D004295 5.9e-33 144.1 94 77.7
CSS0021952 Camellia sinensis var. sinensis HOM05D003692 ORTHO05D004295 7.7e-33 143.7 89 76.4
Medtr4g021570 Medicago truncatula HOM05D003692 ORTHO05D004295 7.7e-33 143.7 94 75.5
TAR623G0629 Trochodendron aralioides HOM05D003692 ORTHO05D004295 7.7e-33 143.7 94 75.5
VMungo0331G1001 Vigna mungo HOM05D003692 ORTHO05D004295 1.0e-32 143.3 94 74.5
Aqoxy1G00886 Aquilegia oxysepala HOM05D003692 ORTHO05D004295 1.3e-32 142.9 94 76.6
FvH4_5g15390 Fragaria vesca HOM05D003692 ORTHO05D004295 1.3e-32 142.9 90 74.4
FAN18G0330 Fragaria x ananassa HOM05D003692 ORTHO05D004295 1.3e-32 142.9 90 74.4
TAR560G0002 Trochodendron aralioides HOM05D003692 ORTHO05D004295 1.3e-32 142.9 94 75.5
Lj3A965G75 Lonicera japonica HOM05D003692 ORTHO05D004295 1.7e-32 142.5 94 72.3
SEGI_14146 Sequoiadendron giganteum HOM05D003692 ORTHO05D004295 1.7e-32 142.5 94 74.5
unitig_8.g4279 Utricularia gibba HOM05D003692 ORTHO05D004295 1.7e-32 142.5 89 75.3
Os03g0822700 Oryza sativa ssp. japonica HOM05D003692 ORTHO05D004295 2.9e-32 141.7 95 72.6
Manes.09G092685 Manihot esculenta HOM05D003692 ORTHO05D004295 5.0e-32 141.0 94 72.3
TPR.G5579 Trifolium pratense HOM05D003692 ORTHO05D004295 5.0e-32 141.0 94 74.5
Oeu001856.1 Olea europaea HOM05D003692 ORTHO05D004295 6.5e-32 140.6 94 73.4
Actinidia11270 Actinidia chinensis HOM05D003692 ORTHO05D004295 8.5e-32 140.2 94 72.3
Actinidia05324 Actinidia chinensis HOM05D003692 ORTHO05D004295 1.1e-31 139.8 89 73.0
CDE07G1498 Ceratophyllum demersum HOM05D003692 ORTHO05D004295 1.4e-31 139.4 94 74.5
HanXRQChr13g0406761 Helianthus annuus HOM05D003692 ORTHO05D004295 1.4e-31 139.4 94 73.4
Lsat_1_v5_gn_5_154881 Lactuca sativa HOM05D003692 ORTHO05D004295 1.4e-31 139.4 94 72.3
Carub.0005s2038 Capsella rubella HOM05D003692 ORTHO05D004295 1.9e-31 139.0 94 67.0
SGA_v2.0_scaffold94G28572 Striga asiatica HOM05D003692 ORTHO05D004295 2.5e-31 138.7 89 74.2
ECA248G3834 Erigeron canadensis HOM05D003692 ORTHO05D004295 3.2e-31 138.3 91 72.5
Oeu023073.1 Olea europaea HOM05D003692 ORTHO05D004295 3.2e-31 138.3 94 72.3
FvH4_6g11350 Fragaria vesca HOM05D003692 ORTHO05D004295 4.2e-31 137.9 88 75.0
FAN14G0506 Fragaria x ananassa HOM05D003692 ORTHO05D004295 4.2e-31 137.9 88 75.0
FAN14G3612 Fragaria x ananassa HOM05D003692 ORTHO05D004295 4.2e-31 137.9 88 75.0
FAN02G3395 Fragaria x ananassa HOM05D003692 ORTHO05D004295 5.5e-31 137.5 88 73.9
FAN05G1146 Fragaria x ananassa HOM05D003692 ORTHO05D004295 5.5e-31 137.5 88 73.9
Phvul.010G011500 Phaseolus vulgaris HOM05D003692 ORTHO05D004295 5.5e-31 137.5 94 70.2
MSTRG.10251 Avicennia marina HOM05D003692 ORTHO05D004295 7.2e-31 137.1 94 70.2
PSO339G0014 Papaver somniferum HOM05D003692 ORTHO05D004295 9.4e-31 136.7 95 71.6
FAN09G2852 Fragaria x ananassa HOM05D003692 ORTHO05D004295 1.6e-30 136.0 88 72.7
AagrBONN_evm.TU.Sc2ySwM_368.3385 Anthoceros agrestis HOM05D003692 ORTHO05D004295 2.1e-30 135.6 89 70.8
BcaB04g18532 Brassica carinata HOM05D003692 ORTHO05D004295 2.7e-30 135.2 94 76.6
ATR0559G081 Amborella trichopoda HOM05D003692 ORTHO05D004295 4.7e-30 134.4 88 71.6
PSO478G2467 Papaver somniferum HOM05D003692 ORTHO05D004295 6.1e-30 134.0 95 69.5
PSO513G0124 Papaver somniferum HOM05D003692 ORTHO05D004295 1.0e-29 133.3 95 69.5
Migut.J00308 Erythranthe guttata HOM05D003692 ORTHO05D004295 1.4e-29 132.9 89 70.8
Sp5g08580 Schrenkiella parvula HOM05D003692 ORTHO05D004295 3.0e-29 131.7 91 64.8
FAN13G1535 Fragaria x ananassa HOM05D003692 ORTHO05D004295 5.1e-29 131.0 90 72.2
AL5G34790 Arabidopsis lyrata HOM05D003692 ORTHO05D004295 2.6e-28 128.6 91 63.7
AUR62042383 Chenopodium quinoa HOM05D003692 ORTHO05D004295 4.4e-28 127.9 143 51.0
ECA248G3146 Erigeron canadensis HOM05D003692 ORTHO05D004295 4.4e-28 127.9 91 67.0
A09p46790 Brassica napus HOM05D003692 ORTHO05D004295 7.4e-28 127.1 91 62.6
Thhalv10010482m.g Eutrema salsugineum HOM05D003692 ORTHO05D004295 7.4e-28 127.1 91 64.8
Pp3c16_19440 Physcomitrium patens HOM05D003692 ORTHO05D004295 9.7e-28 126.7 90 64.4
BraA09t40139Z Brassica rapa HOM05D003692 ORTHO05D004295 1.3e-27 126.3 91 62.6
BcaB01g00236 Brassica carinata HOM05D003692 ORTHO05D004295 1.7e-27 125.9 91 61.5
HPP92_006643 Vanilla planifolia HOM05D003692 ORTHO05D004295 1.7e-27 125.9 94 67.0
CBR_g66724 Chara braunii HOM05D003692 ORTHO05D004295 2.8e-27 125.2 89 64.0
Mapoly0070s0083 Marchantia polymorpha HOM05D003692 ORTHO05D004295 3.7e-27 124.8 88 65.9
BcaC07g39737 Brassica carinata HOM05D003692 ORTHO05D004295 6.3e-27 124.0 91 60.4
C08p29100 Brassica napus HOM05D003692 ORTHO05D004295 6.3e-27 124.0 91 60.4
BolC8t50511H Brassica oleracea HOM05D003692 ORTHO05D004295 6.3e-27 124.0 91 60.4
THA.LOC104823413 Tarenaya hassleriana HOM05D003692 ORTHO05D004295 1.4e-26 122.9 89 64.0
SMO302G0018 Selaginella moellendorffii HOM05D003692 ORTHO05D004295 1.8e-26 122.5 98 65.3
MBI05_g35626_MAGBIO Magnolia biondii HOM05D003692 ORTHO05D004295 2.4e-26 122.1 74 79.7
ECA248G3804 Erigeron canadensis HOM05D003692 ORTHO05D004295 5.3e-26 120.9 94 64.9
AUR62043522 Chenopodium quinoa HOM05D003692 ORTHO05D004295 1.2e-25 119.8 169 43.8
Os03g0271400 Oryza sativa ssp. japonica HOM05D003692 ORTHO05D004295 1.5e-23 112.8 88 64.8
Pp3c5_26180 Physcomitrium patens HOM05D003692 ORTHO05D004295 2.5e-23 112.1 89 59.6
vmacro20176 Vaccinium macrocarpon HOM05D003692 ORTHO05D004295 4.4e-20 101.3 64 81.2
C07p37320 Brassica napus HOM05D003692 ORTHO05D004295 6.3e-19 97.4 79 54.4
Dinv35578 Davidia involucrata HOM05D003692 ORTHO05D004295 1.1e-18 96.7 66 71.2
Oeu010100.1 Olea europaea HOM05D003692 ORTHO05D004295 3.5e-17 91.7 79 62.0
SHI12711 Sapria himalayana HOM05D003692 ORTHO05D000023 5.9e-17 90.9 68 67.6
CARHR163710 Cardamine hirsuta HOM05D003692 ORTHO05D004295 1.6e-14 82.8 66 60.6
Zm00001eb211620 Zea mays HOM05D003692 ORTHO05D004295 3.6e-14 81.6 56 71.4
Nn2g13418 Nelumbo nucifera HOM05D003692 ORTHO05D004295 4.7e-14 81.3 56 73.2
THA.LOC104806556 Tarenaya hassleriana HOM05D003692 ORTHO05D004295 1.2e-12 76.6 90 43.3
ATR0697G190 Amborella trichopoda HOM05D003692 ORTHO05D004295 8.3e-11 70.5 56 64.3
BolC7t44242H Brassica oleracea HOM05D003692 ORTHO05D004295 2.4e-10 68.9 79 39.2
AT3G53800 Arabidopsis thaliana HOM05D003692 ORTHO05D004295 1.2e-09 66.6 54 59.3
MCO10G278 Micromonas commoda HOM05D003692 ORTHO05D004295 8.5e-08 60.5 87 39.1
PRCOL_00004554 Prasinoderma coloniale HOM05D003692 ORTHO05D004295 8.0e-06 53.9 114 35.1


User provided reference genes

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