Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 1.4e-125 453.0 226 100.0
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 1.2e-110 403.3 238 84.9
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 1.2e-108 396.7 226 87.2
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 2.9e-107 392.1 229 86.9
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 1.6e-105 386.3 228 85.1
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 3.5e-105 385.2 223 87.4
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 4.0e-101 371.7 226 80.1
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 7.8e-89 330.9 227 78.0
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 6.6e-88 327.8 226 76.5
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 5.5e-66 255.0 143 90.9
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 9.3e-66 254.2 230 54.8
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 6.9e-61 238.0 143 82.5
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 3.8e-59 232.3 218 52.8
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 1.1e-58 230.7 204 54.9
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 5.5e-58 228.4 204 55.4
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 4.6e-57 225.3 204 54.9
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 6.0e-57 224.9 204 54.9
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 7.9e-57 224.6 218 51.4
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 1.0e-56 224.2 218 51.8
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 1.8e-56 223.4 204 54.9
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 3.9e-56 222.2 218 51.8
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 3.9e-56 222.2 220 51.8
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 6.7e-56 221.5 204 54.4
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 4.3e-55 218.8 224 49.1
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 5.7e-55 218.4 222 51.4
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 2.1e-54 216.5 223 51.1
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 4.8e-54 215.3 205 50.2
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 1.4e-53 213.8 205 49.3
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 2.6e-52 209.5 210 51.4
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 3.4e-52 209.1 205 50.7
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 5.8e-52 208.4 211 50.2
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 7.6e-52 208.0 225 48.9
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 2.2e-51 206.5 216 47.7
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 2.9e-51 206.1 204 50.0
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 2.9e-51 206.1 204 51.0
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 8.4e-51 204.5 216 45.8
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 1.1e-50 204.1 218 47.2
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 2.5e-50 203.0 216 47.2
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 2.5e-50 203.0 221 48.0
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 4.2e-50 202.2 217 47.9
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 7.2e-50 201.4 228 45.6
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 9.3e-50 201.1 221 50.2
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 2.1e-49 199.9 226 48.2
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 2.1e-49 199.9 215 47.9
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 2.1e-49 199.9 200 49.0
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 2.7e-49 199.5 213 47.4
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 2.7e-49 199.5 205 50.2
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 3.5e-49 199.1 235 45.1
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 3.5e-49 199.1 205 47.8
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 4.6e-49 198.7 228 45.2
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 4.6e-49 198.7 214 47.7
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 4.6e-49 198.7 230 46.1
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 6.1e-49 198.4 205 48.8
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 1.8e-48 196.8 196 51.5
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 1.8e-48 196.8 196 51.5
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 2.3e-48 196.4 215 47.0
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 2.3e-48 196.4 224 47.3
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 3.0e-48 196.1 202 50.0
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 3.9e-48 195.7 211 47.4
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 3.9e-48 195.7 214 48.1
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 3.9e-48 195.7 215 47.9
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 3.9e-48 195.7 221 45.7
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 5.1e-48 195.3 211 46.0
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 6.7e-48 194.9 219 47.9
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 6.7e-48 194.9 202 49.5
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 8.7e-48 194.5 204 48.0
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 1.1e-47 194.1 229 43.7
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 1.1e-47 194.1 214 46.7
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 1.1e-47 194.1 212 49.1
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 1.1e-47 194.1 219 47.0
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 1.9e-47 193.4 200 49.5
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 2.5e-47 193.0 216 46.8
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 4.3e-47 192.2 212 48.6
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 5.7e-47 191.8 210 49.0
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 7.4e-47 191.4 215 47.9
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 7.4e-47 191.4 195 51.3
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 4.8e-46 188.7 200 47.5
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 4.8e-46 188.7 196 49.5
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 4.8e-46 188.7 192 49.5
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 6.3e-46 188.3 192 49.5
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 1.8e-45 186.8 204 46.1
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 1.8e-45 186.8 226 44.7
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 3.1e-45 186.0 217 44.7
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 4.1e-45 185.7 216 44.9
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 4.1e-45 185.7 204 45.6
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 5.3e-45 185.3 197 49.2
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 5.3e-45 185.3 213 44.6
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 6.9e-45 184.9 212 46.2
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 6.9e-45 184.9 234 44.4
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 6.9e-45 184.9 231 43.3
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 9.0e-45 184.5 217 46.1
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 9.0e-45 184.5 220 43.6
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 1.2e-44 184.1 205 46.3
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 1.2e-44 184.1 206 45.6
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 1.2e-44 184.1 210 47.1
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.2e-44 184.1 221 45.7
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 2.0e-44 183.3 205 46.8
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 2.6e-44 183.0 213 44.1
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 4.5e-44 182.2 211 44.5
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 4.5e-44 182.2 215 43.7
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 4.5e-44 182.2 206 45.1
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 5.9e-44 181.8 226 42.0
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 7.7e-44 181.4 205 46.8
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 7.7e-44 181.4 197 48.7
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.3e-43 180.6 210 45.2
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 2.2e-43 179.9 204 45.6
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 2.2e-43 179.9 206 46.1
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.9e-43 179.5 210 46.2
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 5.0e-43 178.7 230 44.3
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 5.0e-43 178.7 220 45.9
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 8.5e-43 177.9 211 43.6
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 8.5e-43 177.9 218 43.6
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 1.1e-42 177.6 214 42.1
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.4e-42 177.2 243 41.6
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 2.5e-42 176.4 206 46.6
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 3.2e-42 176.0 230 43.0
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 4.2e-42 175.6 217 44.2
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 5.5e-42 175.3 205 43.4
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 7.2e-42 174.9 243 41.6
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 7.2e-42 174.9 205 45.4
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 7.2e-42 174.9 257 38.9
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 1.6e-41 173.7 231 44.6
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.6e-41 173.7 231 44.6
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.6e-41 173.7 205 43.9
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 2.1e-41 173.3 209 45.0
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 6.1e-41 171.8 206 46.1
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 6.1e-41 171.8 211 45.5
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 1.0e-40 171.0 193 44.6
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.4e-40 170.6 231 44.2
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 2.3e-40 169.9 227 42.7
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 2.3e-40 169.9 230 41.3
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 3.0e-40 169.5 236 44.1
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 6.7e-40 168.3 206 45.6
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 8.8e-40 167.9 210 41.9
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 8.8e-40 167.9 230 41.3
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 2.5e-39 166.4 160 50.0
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 4.3e-39 165.6 237 41.8
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 5.7e-39 165.2 201 44.8
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 9.7e-39 164.5 213 42.3
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 1.3e-38 164.1 227 41.9
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 2.8e-38 162.9 218 40.8
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 3.7e-38 162.5 221 43.0
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 4.8e-38 162.2 114 73.7
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 1.8e-37 160.2 174 46.6
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 2.4e-37 159.8 138 53.6
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 3.1e-37 159.5 200 42.0
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 5.3e-37 158.7 218 39.0
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 1.2e-36 157.5 196 43.9
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 2.0e-36 156.8 193 39.4
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 2.2e-35 153.3 226 40.7
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 2.2e-35 153.3 226 40.7
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 4.7e-33 145.6 265 34.0
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 7.9e-33 144.8 187 43.9
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 3.9e-32 142.5 114 66.7
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 4.4e-31 139.0 207 40.1
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 6.3e-30 135.2 166 43.4
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 7.0e-29 131.7 127 49.6
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 4.5e-28 129.0 145 45.5
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 3.8e-27 125.9 207 36.2
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.6e-25 120.6 63 85.7
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 2.6e-23 113.2 144 45.1
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 4.8e-22 109.0 148 43.2
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 9.1e-21 104.8 115 47.0
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 1.7e-19 100.5 145 40.7
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 8.5e-19 98.2 181 37.6
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 2.1e-17 93.6 60 65.0
Aa31LG1G22160 Aethionema arabicum HOM05D004061 ORTHO05D004693 3.6e-17 92.8 94 53.2
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 9.1e-13 78.2 71 52.1
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 8.5e-11 71.6 68 50.0
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 7.2e-10 68.6 112 39.3
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 3.6e-09 66.2 160 33.1


User provided reference genes

Program Settings