Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 1.0e-290 1002.7 500 100.0
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 1.4e-276 955.7 498 95.8
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 1.4e-276 955.7 498 95.8
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 4.6e-275 950.7 499 95.4
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 1.9e-273 945.3 498 94.6
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 5.6e-273 943.7 499 94.8
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 5.6e-273 943.7 499 94.8
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 1.6e-272 942.2 498 94.4
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 2.4e-271 938.3 500 94.2
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 1.5e-270 935.6 502 93.6
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 4.5e-270 934.1 500 93.8
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 5.8e-270 933.7 506 92.7
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 9.9e-270 932.9 498 94.0
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 1.7e-269 932.2 498 94.0
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 8.4e-269 929.9 498 93.4
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 1.4e-268 929.1 498 93.8
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 5.5e-268 927.2 498 93.4
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 1.6e-267 925.6 498 93.0
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 3.5e-267 924.5 498 93.2
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 1.1e-265 919.5 498 93.0
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 1.2e-259 899.4 497 89.7
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 1.0e-258 896.3 474 94.7
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 1.1e-249 866.3 493 89.0
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 8.5e-245 850.1 502 83.9
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 3.3e-241 838.2 445 94.2
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 8.0e-235 817.0 495 82.0
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 2.9e-221 771.9 503 75.5
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 3.8e-221 771.5 507 75.3
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 3.8e-221 771.5 507 75.3
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 1.5e-220 769.6 505 77.0
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 2.1e-219 765.8 507 75.0
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 3.6e-219 765.0 507 75.0
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 1.4e-218 763.1 500 76.0
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 3.4e-217 758.4 512 74.2
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 3.4e-217 758.4 504 75.2
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 5.7e-217 757.7 508 75.2
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 7.0e-215 750.7 503 74.8
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 9.1e-215 750.4 505 74.5
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 1.2e-214 750.0 508 74.0
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 1.3e-213 746.5 508 73.8
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 2.3e-213 745.7 508 73.6
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 2.3e-213 745.7 506 72.1
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 2.9e-213 745.3 506 72.3
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 3.3e-212 741.9 512 72.5
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 7.2e-212 740.7 508 72.8
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 7.2e-212 740.7 508 73.8
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 2.1e-211 739.2 503 73.2
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 8.0e-211 737.3 503 73.8
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 1.8e-210 736.1 504 72.8
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 5.2e-210 734.6 505 71.9
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 2.6e-209 732.3 510 72.2
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 2.6e-209 732.3 507 71.4
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 2.6e-209 732.3 507 73.2
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 1.3e-208 729.9 507 72.0
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 2.2e-208 729.2 507 72.2
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 3.1e-207 725.3 504 71.8
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 5.4e-207 724.5 505 72.1
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 9.2e-207 723.8 506 70.4
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 2.7e-206 722.2 503 70.4
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 5.0e-205 718.0 498 71.7
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 8.6e-205 717.2 498 72.3
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 1.5e-204 716.5 512 69.9
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 3.3e-204 715.3 512 71.1
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 4.3e-204 714.9 510 71.2
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.6e-203 713.0 512 69.9
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 4.7e-203 711.4 505 71.5
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 6.1e-203 711.1 508 70.5
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 8.0e-203 710.7 504 71.8
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 1.4e-202 709.9 509 70.1
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.4e-202 709.9 505 71.3
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 1.8e-202 709.5 505 70.5
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 6.8e-202 707.6 545 66.2
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.2e-201 706.8 474 74.1
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.5e-201 706.4 492 72.2
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 2.6e-201 705.7 545 66.2
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 4.4e-201 704.9 543 65.9
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 9.2e-199 697.2 474 74.7
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 9.2e-199 697.2 511 67.1
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 2.7e-198 695.7 499 70.5
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 6.0e-198 694.5 505 68.9
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 1.3e-197 693.3 510 68.4
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 1.7e-197 693.0 503 69.2
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.3e-197 692.6 499 70.1
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.9e-197 691.8 499 69.9
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 5.0e-197 691.4 508 69.9
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 5.0e-197 691.4 512 68.2
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 3.3e-196 688.7 505 67.9
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.6e-195 685.3 508 69.7
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 4.7e-195 684.9 474 72.6
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 1.8e-194 682.9 513 67.6
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 2.3e-194 682.6 475 71.8
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 8.9e-194 680.6 507 67.7
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.3e-192 676.8 508 67.7
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 2.9e-192 675.6 502 67.9
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 8.3e-192 674.1 501 67.7
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 1.9e-191 672.9 505 68.1
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.4e-191 672.5 596 60.1
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 5.4e-191 671.4 525 63.8
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 3.9e-189 665.2 452 74.6
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 5.6e-188 661.4 513 67.1
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 6.2e-187 657.9 457 71.6
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 4.0e-186 655.2 505 65.5
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 4.0e-186 655.2 495 65.3
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.5e-185 653.3 508 67.5
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.0e-185 652.9 508 67.5
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 1.3e-184 650.2 582 59.1
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 1.3e-184 650.2 505 64.4
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 1.3e-184 650.2 562 61.4
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 4.1e-183 645.2 534 64.8
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 7.1e-183 644.4 497 66.0
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 7.1e-183 644.4 445 72.1
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 4.6e-182 641.7 500 63.4
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 6.0e-182 641.3 505 66.9
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 5.6e-180 634.8 499 66.9
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 1.2e-179 633.6 507 64.7
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 4.0e-178 628.6 526 63.5
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 1.2e-177 627.1 513 62.4
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 1.2e-177 627.1 526 63.3
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 3.2e-175 619.0 504 62.7
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 2.1e-174 616.3 512 63.7
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 5.6e-172 608.2 510 62.0
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 1.9e-167 593.2 470 64.5
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 3.0e-157 559.3 402 69.4
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 4.3e-156 555.4 399 69.7
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 9.6e-156 554.3 541 53.2
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 1.5e-148 530.4 525 53.5
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 1.1e-143 514.2 492 58.3
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 1.4e-143 513.8 664 46.5
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 6.1e-142 508.4 416 61.1
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 7.2e-135 485.0 453 59.2
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 1.8e-130 470.3 437 57.4
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 5.7e-124 448.7 334 67.1
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 2.9e-120 436.4 270 80.7
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.0e-112 411.4 273 75.1
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 1.6e-102 377.5 279 68.5
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 2.8e-86 323.6 244 68.0
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 1.3e-83 314.7 241 63.9
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.0e-80 305.1 206 70.4
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 4.3e-79 299.7 261 59.0
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 1.9e-71 274.2 492 39.0
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 9.9e-68 261.9 214 63.1
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 2.0e-60 237.7 557 31.6
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 1.1e-55 221.9 388 35.8
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 1.1e-42 178.7 138 65.2
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.0e-40 170.6 172 53.5
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 4.3e-39 166.8 106 77.4
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 6.5e-35 152.9 184 42.9
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.3e-31 140.6 120 65.0
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.8e-30 137.5 245 39.6
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 8.2e-30 136.0 245 39.2
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 1.3e-27 128.6 68 86.8
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 4.6e-25 120.2 109 51.4
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.5e-23 115.2 63 87.3
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 9.4e-18 95.9 183 28.4
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 6.9e-13 79.7 113 45.1
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 4.5e-12 77.0 76 55.3
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 6.5e-11 73.2 61 63.9
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.9e-08 63.9 105 41.9
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 8.8e-08 62.8 36 80.6
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 3.3e-07 60.8 36 75.0
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 4.4e-07 60.5 80 47.5
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 1.3e-06 58.9 127 28.3
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 1.3e-06 58.9 111 36.0


User provided reference genes

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