Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1686.8 835 100.0
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1513.0 839 90.7
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 0.0e+00 1496.9 838 89.7
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1496.9 838 89.7
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1492.6 838 89.6
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1480.3 835 87.4
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1474.1 836 88.3
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 0.0e+00 1471.4 836 88.0
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1465.3 837 87.9
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1435.6 835 84.9
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1403.7 835 84.2
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 0.0e+00 1391.7 788 88.7
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1311.2 847 77.9
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1310.8 850 77.4
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1310.4 848 78.5
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1303.5 851 77.8
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1302.3 850 77.2
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1270.4 855 74.7
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1253.8 846 74.6
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 0.0e+00 1253.4 858 73.9
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1253.4 858 73.9
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 0.0e+00 1250.7 857 74.4
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1221.5 824 75.1
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 0.0e+00 1184.9 838 73.0
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 0.0e+00 1171.0 666 88.9
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1167.1 855 68.9
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1154.8 858 67.7
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1141.3 857 67.1
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1139.8 846 67.7
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1137.9 844 67.7
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1129.8 861 67.1
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1123.2 863 66.7
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1121.3 865 65.9
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1118.2 852 66.3
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1116.3 852 66.2
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1115.9 861 67.1
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1114.4 835 67.9
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1114.4 851 66.7
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1114.0 837 67.3
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1113.6 861 66.9
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1110.9 852 66.2
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1110.5 866 66.3
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1107.4 861 66.8
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1100.5 866 65.9
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1100.5 860 65.9
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1097.0 857 66.0
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1095.9 889 64.8
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 0.0e+00 1094.7 714 76.3
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1094.0 817 68.5
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1093.6 864 64.5
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1089.7 859 64.7
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1088.6 862 65.1
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1087.8 852 64.8
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1085.1 859 64.5
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1085.1 844 65.4
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1085.1 855 65.5
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1083.2 834 65.9
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 5.7e-312 1074.3 856 63.7
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 1.1e-311 1072.8 855 64.6
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 2.9e-311 1071.6 852 65.4
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 4.0e-311 1071.2 850 63.8
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 3.3e-310 1068.1 849 62.9
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 3.3e-310 1068.1 848 64.4
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 5.7e-310 1067.4 861 64.3
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 2.1e-309 1065.4 872 64.0
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 3.7e-309 1064.7 850 64.6
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 6.2e-309 1063.9 841 65.3
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 1.1e-308 1063.1 856 63.9
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 1.2e-307 1059.7 861 64.7
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 4.5e-307 1057.7 846 63.7
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 4.9e-306 1054.3 883 62.5
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 4.2e-305 1051.2 852 63.6
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 9.3e-305 1050.0 835 63.7
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 4.6e-304 1047.7 847 64.0
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 3.0e-303 1045.0 830 65.2
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 6.7e-303 1043.9 855 63.0
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 8.7e-303 1043.5 857 62.8
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 2.5e-302 1042.0 756 69.4
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 3.3e-302 1041.6 858 62.5
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 5.7e-302 1040.8 855 62.8
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 7.4e-302 1040.4 835 63.5
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 9.6e-302 1040.0 855 64.1
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 2.8e-301 1038.5 770 67.9
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 2.8e-301 1038.5 862 63.0
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 6.3e-301 1037.3 855 62.7
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 8.2e-301 1036.9 938 58.5
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 2.0e-299 1032.3 916 60.3
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 1.3e-298 1029.6 771 67.6
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 2.9e-298 1028.5 854 62.8
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 5.0e-298 1027.7 962 57.3
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 9.3e-297 1023.5 862 61.7
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 1.2e-296 1023.1 833 63.7
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 2.7e-296 1021.9 837 62.4
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 5.7e-294 1014.2 871 61.3
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 5.0e-290 1001.1 834 61.6
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 3.2e-289 998.4 765 66.0
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 1.2e-288 996.5 931 58.2
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 6.1e-288 994.2 732 68.7
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 3.0e-287 991.9 864 60.9
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 1.4e-284 983.0 926 58.1
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 9.1e-284 980.3 845 61.3
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 1.5e-283 979.5 700 69.7
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 1.5e-278 963.0 740 66.5
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 7.0e-276 954.1 833 61.1
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 4.5e-275 951.4 1014 53.6
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 5.0e-274 948.0 883 57.2
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 8.5e-274 947.2 822 60.0
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 1.6e-259 899.8 721 64.1
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 1.3e-253 880.2 846 54.4
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 2.1e-248 862.8 605 71.7
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 1.7e-245 853.2 849 54.2
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 1.8e-244 849.7 789 56.7
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 9.2e-244 847.4 848 54.1
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 1.2e-243 847.0 742 60.9
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 3.7e-229 798.9 474 84.4
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 5.8e-222 775.0 535 73.3
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 4.4e-214 748.8 847 50.5
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 5.8e-214 748.4 451 82.9
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 1.6e-211 740.3 844 48.7
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 1.1e-201 707.6 460 78.9
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 1.8e-194 683.7 783 50.7
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 5.3e-191 672.2 539 63.1
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 3.4e-190 669.5 866 45.5
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 3.5e-187 659.4 876 44.7
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 3.4e-182 642.9 858 43.5
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 4.7e-163 579.3 384 74.7
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 3.3e-161 573.2 538 56.9
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 8.8e-154 548.5 755 44.0
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 7.0e-151 538.9 492 60.6
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 5.2e-146 522.7 805 41.2
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 3.8e-141 506.5 473 58.6
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 6.1e-139 499.2 377 66.8
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 1.4e-138 498.0 426 61.0
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 2.4e-135 487.3 363 70.8
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 2.1e-131 474.2 458 55.2
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 3.9e-125 453.4 293 72.7
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 2.1e-123 447.6 460 53.7
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 9.2e-119 432.2 393 57.8
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 7.5e-113 412.5 354 60.5
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 2.9e-112 410.6 307 65.5
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 2.9e-112 410.6 306 65.4
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 4.3e-100 370.2 308 58.4
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 1.8e-77 295.0 194 71.6
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 1.1e-66 259.2 177 68.9
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 2.6e-65 254.6 284 47.2
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 1.8e-58 231.9 186 60.2
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 1.9e-55 221.9 155 72.3
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 2.7e-54 218.0 248 50.0
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 1.4e-50 205.7 131 76.3
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 1.4e-45 189.1 168 54.8
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 3.9e-45 187.6 491 31.8
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 6.7e-45 186.8 122 81.1
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 5.5e-31 140.6 155 48.4
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 2.3e-29 135.2 72 94.4
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 2.0e-28 132.1 128 58.6
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 2.2e-27 128.6 249 36.9
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 1.8e-21 109.0 108 52.8
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 5.9e-17 94.0 66 66.7
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 5.6e-15 87.4 76 65.8
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 2.1e-14 85.5 94 46.8
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 6.1e-14 84.0 58 67.2
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 6.4e-11 73.9 106 42.5
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.1e-10 73.2 67 52.2
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 2.0e-09 68.9 35 88.6
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 2.0e-09 68.9 35 88.6
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 2.0e-09 68.9 35 88.6
AL6G39020 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 1.6e-06 59.3 35 80.0
RcHm_v2.0_Chr2g0132831 Rosa chinensis HOM05D004192 ORTHO05D004917 1.6e-06 59.3 52 59.6


User provided reference genes

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