Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 3.9e-260 901.0 465 100.0
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 9.4e-214 746.9 471 83.4
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 4.0e-196 688.3 469 77.8
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.7e-194 682.9 448 80.8
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 8.6e-191 670.6 463 77.1
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 2.5e-190 669.1 464 76.5
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 4.0e-188 661.8 447 79.0
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 3.4e-187 658.7 447 78.7
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 2.1e-181 639.4 447 77.0
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 1.8e-180 636.3 447 76.5
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 2.9e-170 602.4 452 74.3
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.2e-168 597.0 447 68.7
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.6e-168 596.7 447 68.5
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.5e-166 590.1 454 70.5
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 1.6e-160 570.1 451 67.8
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 5.1e-159 565.1 450 66.7
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 1.9e-158 563.1 449 65.7
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.5e-158 562.8 448 66.1
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 5.6e-158 561.6 414 75.4
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 2.8e-157 559.3 449 65.5
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 3.6e-157 558.9 450 66.4
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 6.2e-157 558.1 448 65.4
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 4.0e-156 555.4 448 66.1
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 4.0e-156 555.4 449 66.1
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 9.9e-147 524.2 446 63.0
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 2.7e-128 463.0 451 57.2
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 3.9e-127 459.1 333 76.6
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 4.5e-123 445.7 467 54.6
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 2.5e-118 429.9 454 54.2
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 5.9e-115 418.7 460 52.8
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 3.8e-114 416.0 462 50.9
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 5.5e-113 412.1 455 52.7
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 1.2e-112 411.0 463 52.3
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.6e-112 410.6 454 52.9
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 7.9e-112 408.3 462 51.1
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 6.7e-111 405.2 466 49.8
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 4.8e-109 399.1 454 49.6
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 1.8e-108 397.1 457 49.9
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 4.1e-108 396.0 455 49.2
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 1.5e-107 394.0 466 49.6
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 5.9e-107 392.1 466 48.7
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 5.9e-107 392.1 459 49.5
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.7e-106 390.6 467 48.4
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 1.7e-106 390.6 466 48.9
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 2.2e-106 390.2 465 49.9
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 3.8e-106 389.4 459 47.7
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 8.5e-106 388.3 465 49.2
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 2.5e-105 386.7 466 49.1
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 4.2e-105 386.0 468 47.0
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 5.5e-105 385.6 475 48.2
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 2.1e-104 383.6 467 48.4
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 2.7e-104 383.3 456 48.2
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.4e-103 380.9 463 48.6
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 1.4e-103 380.9 466 49.6
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.8e-103 380.6 463 48.4
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.3e-103 380.2 459 47.1
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 2.3e-103 380.2 451 47.9
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 3.9e-103 379.4 467 46.5
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 3.9e-103 379.4 463 48.2
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 6.7e-103 378.6 458 47.8
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 8.8e-103 378.3 456 47.4
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 8.8e-103 378.3 456 47.4
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 1.5e-102 377.5 461 49.5
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 2.0e-102 377.1 466 48.3
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 4.4e-102 375.9 461 48.8
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.4e-102 375.9 459 47.3
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 4.4e-102 375.9 462 48.7
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 7.4e-102 375.2 453 48.8
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.3e-101 374.4 457 47.3
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 2.2e-101 373.6 462 48.1
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 1.8e-100 370.5 461 48.2
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 7.0e-100 368.6 470 46.8
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 9.1e-100 368.2 458 47.4
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 1.2e-99 367.9 472 46.0
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 2.0e-99 367.1 378 51.6
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 2.6e-99 366.7 464 46.8
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 3.5e-99 366.3 453 47.0
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 4.5e-99 365.9 470 46.4
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 5.9e-99 365.5 461 46.0
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.0e-98 364.8 453 46.8
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 8.5e-98 361.7 378 50.3
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 1.5e-97 360.9 467 47.5
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.5e-97 360.1 453 46.8
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 9.4e-97 358.2 432 49.5
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 8.0e-96 355.1 462 46.5
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 1.4e-95 354.4 460 45.9
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 4.4e-94 349.4 451 47.9
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 1.3e-93 347.8 492 43.7
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 4.8e-93 345.9 475 44.4
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 9.1e-92 341.7 465 45.2
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 7.7e-91 338.6 593 38.3
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 1.3e-90 337.8 462 45.7
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 6.5e-90 335.5 517 42.2
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 9.4e-89 331.6 413 47.9
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 1.6e-88 330.9 465 43.2
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 2.7e-88 330.1 413 47.7
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 4.7e-88 329.3 464 43.5
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 8.0e-88 328.6 469 43.7
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 1.0e-87 328.2 466 43.3
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.8e-87 327.4 461 42.5
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 2.3e-87 327.0 453 46.6
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 3.4e-86 323.2 340 50.3
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 4.4e-86 322.8 436 43.8
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 9.8e-86 321.6 497 40.8
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.3e-85 321.2 462 42.0
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 2.2e-85 320.5 286 56.3
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 1.8e-84 317.4 456 43.0
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 4.1e-84 316.2 451 43.9
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 4.5e-83 312.8 477 41.3
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 7.7e-83 312.0 395 45.1
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 2.2e-82 310.5 483 40.2
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 3.8e-82 309.7 408 46.3
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 7.2e-81 305.4 449 43.2
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 4.7e-80 302.8 481 41.6
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 8.0e-80 302.0 418 45.5
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 1.0e-79 301.6 414 45.4
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 5.2e-79 299.3 466 41.2
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 5.2e-79 299.3 442 42.1
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 8.8e-79 298.5 442 42.1
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 5.7e-78 295.8 301 53.2
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 1.3e-77 294.7 466 41.0
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 2.2e-77 293.9 406 43.6
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 3.1e-76 290.0 460 40.0
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.1e-73 281.6 422 42.7
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 3.3e-73 280.0 392 43.9
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 9.5e-73 278.5 521 36.1
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.2e-72 278.1 337 48.4
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 3.0e-71 273.5 461 37.1
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 3.4e-70 270.0 310 46.8
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 5.7e-70 269.2 395 41.8
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 3.2e-68 263.5 372 42.2
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 3.5e-67 260.0 298 47.7
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 4.6e-67 259.6 360 42.8
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 5.0e-66 256.1 367 41.1
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 6.6e-66 255.8 448 40.4
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 1.0e-63 248.4 202 63.9
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 2.3e-63 247.3 284 52.1
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 1.5e-62 244.6 236 53.8
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 2.9e-61 240.4 418 40.2
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 6.4e-61 239.2 350 40.6
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 1.6e-59 234.6 354 41.0
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 3.5e-59 233.4 370 41.9
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 7.8e-59 232.3 365 38.9
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 7.8e-59 232.3 380 40.3
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 2.3e-58 230.7 384 41.1
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 4.3e-57 226.5 315 40.0
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 2.1e-56 224.2 314 44.3
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.8e-55 221.1 308 39.3
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.3e-55 220.7 308 39.3
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.3e-53 214.9 287 41.5
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.3e-53 214.9 304 37.8
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 7.8e-51 205.7 417 34.8
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 3.6e-48 196.8 391 35.0
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 3.6e-48 196.8 326 37.4
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 8.1e-48 195.7 377 36.3
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 2.3e-47 194.1 130 73.8
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 1.3e-45 188.3 224 47.3
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 3.2e-44 183.7 190 51.6
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 1.2e-43 181.8 250 44.4
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 1.3e-42 178.3 390 35.4
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 6.6e-42 176.0 202 47.0
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 4.7e-40 169.9 293 35.8
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 3.1e-39 167.2 279 38.0
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 6.0e-35 152.9 251 40.6
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 1.3e-32 145.2 213 41.3
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 1.6e-32 144.8 132 55.3
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 2.0e-30 137.9 165 47.3
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 6.4e-29 132.9 90 72.2
BcaC07g36872 Brassica carinata HOM05D003737 ORTHO05D004640 4.0e-23 113.6 215 37.7
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 4.5e-22 110.2 92 59.8
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 9.9e-22 109.0 202 36.1
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 3.8e-21 107.1 190 36.8
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 4.9e-21 106.7 186 37.6
Sp7g10590 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.2e-19 102.1 83 71.1
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.1e-19 101.3 77 66.2
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 7.9e-19 99.4 66 71.2
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.3e-18 98.6 78 64.1
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 1.9e-17 94.7 216 36.6
BcaB01g00036 Brassica carinata HOM05D003737 ORTHO05D095156 4.9e-13 80.1 78 61.5
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 2.1e-11 74.7 54 66.7
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 9.6e-09 65.9 62 50.0


User provided reference genes

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