Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 1.5e-187 659.4 356 100.0
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 6.0e-176 620.9 356 94.7
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 3.6e-157 558.5 357 86.6
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 3.6e-157 558.5 356 86.2
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 8.9e-156 553.9 364 84.9
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 7.6e-155 550.8 357 84.6
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 7.6e-155 550.8 357 84.6
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 8.4e-154 547.4 354 84.5
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 1.6e-152 543.1 380 81.1
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 4.3e-150 535.0 359 84.7
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 8.1e-149 530.8 372 81.2
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 3.3e-142 508.8 398 73.6
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 2.9e-138 495.7 354 78.0
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 2.7e-136 489.2 351 81.2
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 3.0e-135 485.7 354 77.4
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 3.0e-135 485.7 356 79.2
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 3.0e-135 485.7 356 79.2
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 3.3e-134 482.3 349 80.5
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 7.2e-121 438.0 353 71.1
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 8.2e-101 371.3 354 63.6
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 8.2e-101 371.3 352 63.1
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 8.2e-101 371.3 352 63.1
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 4.1e-100 369.0 352 62.8
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 1.3e-98 364.0 353 62.6
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 3.8e-98 362.5 357 62.7
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 2.4e-92 343.2 356 59.6
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 4.1e-92 342.4 354 58.8
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 5.3e-92 342.0 353 60.9
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 5.3e-92 342.0 351 60.1
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 5.9e-91 338.6 351 57.5
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 6.5e-90 335.1 359 57.9
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 3.2e-89 332.8 356 58.4
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 5.5e-89 332.0 340 60.0
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 8.0e-88 328.2 355 56.3
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 8.0e-88 328.2 349 61.3
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 3.0e-87 326.2 339 56.9
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 4.0e-87 325.9 355 57.5
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 4.0e-87 325.9 355 57.5
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 2.2e-85 320.1 335 59.1
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 8.3e-85 318.2 349 57.0
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 1.4e-84 317.4 352 57.1
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 1.4e-84 317.4 336 59.2
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 7.0e-84 315.1 359 56.5
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 9.1e-84 314.7 359 56.8
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 9.1e-84 314.7 340 57.4
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 1.2e-83 314.3 368 54.1
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.7e-83 313.2 359 56.5
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 3.5e-83 312.8 357 56.6
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 4.5e-83 312.4 356 56.5
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 2.9e-82 309.7 343 55.7
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 2.5e-81 306.6 359 55.7
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.5e-81 306.6 359 55.7
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 7.2e-81 305.1 366 54.9
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 7.2e-81 305.1 353 55.8
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 1.6e-80 303.9 335 54.9
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 2.1e-80 303.5 343 54.5
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 8.0e-80 301.6 376 53.2
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 6.8e-79 298.5 353 53.5
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 9.8e-78 294.7 325 56.6
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 1.8e-76 290.4 341 53.4
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 9.2e-76 288.1 330 54.2
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 1.2e-75 287.7 355 52.1
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 1.2e-75 287.7 350 54.6
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 1.6e-75 287.3 357 52.1
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 2.7e-75 286.6 341 53.1
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 5.9e-75 285.4 356 53.4
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 5.9e-75 285.4 356 53.4
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 2.9e-74 283.1 337 54.0
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 1.9e-73 280.4 352 52.0
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 1.9e-73 280.4 353 53.5
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 2.5e-73 280.0 358 51.7
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 3.3e-73 279.6 350 50.6
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 5.6e-73 278.9 356 50.6
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 7.3e-73 278.5 337 55.2
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 1.2e-72 277.7 348 50.9
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 1.0e-71 274.6 335 52.2
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 3.0e-71 273.1 355 51.3
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 8.9e-71 271.6 355 49.3
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 2.0e-70 270.4 350 51.4
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 5.7e-70 268.9 316 50.6
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 7.5e-70 268.5 334 52.1
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 2.2e-69 266.9 345 51.6
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 6.4e-69 265.4 350 48.3
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 1.2e-67 261.2 350 48.9
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 1.2e-67 261.2 376 44.4
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 1.0e-66 258.1 315 54.6
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 3.0e-66 256.5 356 47.2
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 5.0e-66 255.8 354 48.9
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 6.6e-66 255.4 348 49.7
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 5.6e-65 252.3 357 48.2
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 7.3e-65 251.9 352 48.3
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 1.2e-64 251.1 372 47.8
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 8.9e-63 245.0 349 46.4
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 4.9e-61 239.2 353 45.9
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 6.4e-61 238.8 307 48.5
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 1.4e-60 237.7 352 46.9
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 1.9e-60 237.3 281 54.1
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 4.6e-59 232.6 348 47.1
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 1.3e-58 231.1 352 46.6
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 1.3e-58 231.1 346 45.7
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 2.3e-58 230.3 340 44.7
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.9e-57 227.3 344 45.1
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 3.3e-57 226.5 354 45.5
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 1.2e-56 224.6 342 46.5
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 1.6e-56 224.2 357 44.3
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 1.6e-56 224.2 371 44.2
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 4.7e-56 222.6 337 45.7
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 6.2e-56 222.2 344 44.5
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 6.2e-56 222.2 343 44.6
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 1.1e-55 221.5 343 44.6
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 3.2e-52 209.9 337 42.4
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 1.0e-50 204.9 340 44.4
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 1.0e-50 204.9 340 44.4
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 6.6e-50 202.2 356 41.6
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 9.5e-49 198.4 298 47.7
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 1.6e-48 197.6 340 40.3
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 8.1e-48 195.3 360 41.7
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 2.9e-45 186.8 181 61.9
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 4.1e-44 183.0 350 42.3
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 1.0e-42 178.3 354 39.5
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 1.5e-41 174.5 346 39.0
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 3.6e-40 169.9 298 41.6
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 1.1e-39 168.3 350 40.6
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 2.0e-38 164.1 130 71.5
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 5.4e-36 156.0 207 49.8
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 6.0e-35 152.5 127 66.1
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 6.6e-34 149.1 367 36.2
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 1.1e-33 148.3 321 36.8
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.5e-33 147.9 336 34.8
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 2.5e-33 147.1 278 42.4
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 1.3e-32 144.8 316 39.2
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 3.8e-29 133.3 323 37.2
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 6.7e-26 122.5 252 38.9
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 1.4e-23 114.8 423 31.0
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 6.9e-23 112.5 186 41.9
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 5.8e-22 109.4 106 54.7
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 1.6e-19 101.3 101 57.4
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 4.6e-19 99.8 202 44.1
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 7.9e-19 99.0 331 30.8
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 3.3e-17 93.6 140 40.7
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.3e-16 91.7 144 50.0
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 2.2e-13 80.9 173 38.2
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 1.9e-12 77.8 144 42.4
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 3.0e-10 70.5 100 44.0
Cre02.g082300 Chlamydomonas reinhardtii HOM05D004638 ORTHO05D005443 1.4e-07 61.6 414 26.3
Medtr2g079040 Medicago truncatula HOM05D004638 ORTHO05D005443 9.0e-07 58.9 50 62.0
Lsat_1_v5_gn_9_30260 Lactuca sativa HOM05D004638 ORTHO05D005443 1.2e-06 58.5 60 56.7
Nitab4.5_0000047g0240 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.2e-06 58.5 87 43.7
Nitab4.5_0000047g0220 Nicotiana tabacum HOM05D004638 ORTHO05D005443 2.6e-06 57.4 206 29.6
PRCOL_00002513 Prasinoderma coloniale HOM05D004638 ORTHO05D005443 5.9e-06 56.2 386 24.6


User provided reference genes

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