Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g37500 Schrenkiella parvula HOM05D007902 ORTHO05D009839 1.2e-103 379.8 183 100.0
AT5G05330 Arabidopsis thaliana HOM05D007902 ORTHO05D009839 5.9e-79 297.7 189 78.8
BcaC03g13156 Brassica carinata HOM05D007902 ORTHO05D009839 3.8e-78 295.0 179 82.1
AL6G15200 Arabidopsis lyrata HOM05D007902 ORTHO05D009839 6.6e-78 294.3 189 79.9
BcaB05g21722 Brassica carinata HOM05D007902 ORTHO05D009839 1.1e-77 293.5 180 81.1
C02p02280 Brassica napus HOM05D007902 ORTHO05D009839 7.3e-77 290.8 179 80.4
BcaC06g32241 Brassica carinata HOM05D007902 ORTHO05D009839 3.6e-76 288.5 192 80.7
BolC9t59901H Brassica oleracea HOM05D007902 ORTHO05D009839 6.1e-76 287.7 191 80.1
C09p71380 Brassica napus HOM05D007902 ORTHO05D009839 4.9e-73 278.1 183 81.4
BraA10t45132Z Brassica rapa HOM05D007902 ORTHO05D009839 1.1e-72 276.9 189 79.4
BraA02t04842Z Brassica rapa HOM05D007902 ORTHO05D009839 1.4e-72 276.6 170 81.8
CARHR207920 Cardamine hirsuta HOM05D007902 ORTHO05D009839 2.0e-71 272.7 189 76.2
Carub.0006s0425 Capsella rubella HOM05D007902 ORTHO05D009839 3.5e-71 271.9 188 74.5
BolC2t06195H Brassica oleracea HOM05D007902 ORTHO05D009839 2.3e-62 242.7 170 74.1
Thhalv10014946m.g Eutrema salsugineum HOM05D007902 ORTHO05D009839 3.6e-60 235.3 142 79.6
Gohir.A13G005700 Gossypium hirsutum HOM05D007902 ORTHO05D009839 2.0e-34 149.8 175 47.4
TAR623G0347 Trochodendron aralioides HOM05D007902 ORTHO05D009839 4.5e-34 148.7 178 48.3
Cpa.g.sc19.89 Carica papaya HOM05D007902 ORTHO05D009839 1.9e-32 143.3 190 43.7
Potri.019G049100 Populus trichocarpa HOM05D007902 ORTHO05D009839 5.4e-32 141.7 174 46.0
Manes.07G138200 Manihot esculenta HOM05D007902 ORTHO05D009839 9.3e-32 141.0 182 47.3
Gohir.D13G005400 Gossypium hirsutum HOM05D007902 ORTHO05D009839 1.2e-31 140.6 175 46.3
Gorai.013G006100 Gossypium raimondii HOM05D007902 ORTHO05D009839 1.6e-31 140.2 175 46.3
Peaxi162Scf00464g00015 Petunia axillaris HOM05D007902 ORTHO05D009839 3.0e-30 136.0 171 46.8
Actinidia07804 Actinidia chinensis HOM05D007902 ORTHO05D009839 3.9e-30 135.6 171 46.8
Dinv21823 Davidia involucrata HOM05D007902 ORTHO05D009839 3.9e-30 135.6 179 45.3
QL08p064506 Quercus lobata HOM05D007902 ORTHO05D009839 5.1e-30 135.2 184 44.6
Sabra19G0058600 Salix brachista HOM05D007902 ORTHO05D009839 4.3e-29 132.1 177 44.1
Eucgr.G03123 Eucalyptus grandis HOM05D007902 ORTHO05D009839 7.4e-29 131.3 157 45.9
Hma1.2p1_0292F.1_g115760 Hydrangea macrophylla HOM05D007902 ORTHO05D009839 2.1e-28 129.8 176 46.6
Ciclev10032767m.g Citrus clementina HOM05D007902 ORTHO05D009839 3.7e-28 129.0 161 46.6
Haze_17334 Corylus avellana HOM05D007902 ORTHO05D009839 8.1e-28 127.9 174 44.8
Lsat_1_v5_gn_9_59200 Lactuca sativa HOM05D007902 ORTHO05D009839 1.4e-27 127.1 176 44.3
Nn2g10362 Nelumbo nucifera HOM05D007902 ORTHO05D009839 3.1e-27 125.9 172 45.9
COL.COLO4_26867 Corchorus olitorius HOM05D005928 ORTHO05D007500 5.3e-27 125.2 161 47.8
A03p43050 Brassica napus HOM05D007902 ORTHO05D009839 6.9e-27 124.8 79 81.0
BraA07t29812Z Brassica rapa HOM05D007902 ORTHO05D009839 6.9e-27 124.8 84 77.4
A09p12450 Brassica napus HOM05D007902 ORTHO05D009839 1.2e-26 124.0 79 81.0
Aqoxy4G02352 Aquilegia oxysepala HOM05D007902 ORTHO05D009839 1.5e-26 123.6 191 40.8
CAN.G591.5 Capsicum annuum HOM05D007902 ORTHO05D009839 2.0e-26 123.2 180 41.1
EL10Ac2g04265 Beta vulgaris HOM05D007902 ORTHO05D009839 2.9e-25 119.4 170 39.4
Prupe.2G261300 Prunus persica HOM05D007902 ORTHO05D009839 3.8e-25 119.0 179 43.0
vmacro09979 Vaccinium macrocarpon HOM05D007902 ORTHO05D009839 3.8e-25 119.0 145 44.1
Sopen06g015820 Solanum pennellii HOM05D007902 ORTHO05D009839 6.4e-25 118.2 156 45.5
Migut.F00588 Erythranthe guttata HOM05D007902 ORTHO05D009839 8.4e-25 117.9 153 43.1
SalBow5G2004 Salvia bowleyana HOM05D007902 ORTHO05D009839 8.4e-25 117.9 173 41.6
MD01G1163300 Malus domestica HOM05D007902 ORTHO05D009839 1.9e-24 116.7 170 42.9
Thecc.10G175100 Theobroma cacao HOM05D007902 ORTHO05D009839 1.9e-24 116.7 174 46.0
MD07G1231300 Malus domestica HOM05D007902 ORTHO05D009839 3.2e-24 115.9 171 43.9
CiPaw.01G304600 Carya illinoinensis HOM05D007902 ORTHO05D009839 4.2e-24 115.5 162 43.2
Ca_06023_v3 Cicer arietinum L. HOM05D007902 ORTHO05D009839 4.2e-24 115.5 156 44.2
FvH4_7g25601 Fragaria vesca HOM05D007902 ORTHO05D009839 4.2e-24 115.5 152 45.4
HanXRQChr09g0251491 Helianthus annuus HOM05D007902 ORTHO05D009839 4.2e-24 115.5 161 42.9
RcHm_v2.0_Chr1g0371741 Rosa chinensis HOM05D007902 ORTHO05D009839 4.2e-24 115.5 175 44.0
FAN03G2841 Fragaria x ananassa HOM05D001122 ORTHO05D001877 5.5e-24 115.2 154 44.8
PGR142G4074 Punica granatum HOM05D007902 ORTHO05D009839 5.5e-24 115.2 188 38.8
CANSAT56G3130 Cannabis sativa HOM05D007902 ORTHO05D009839 9.3e-24 114.4 183 38.3
TWI53G0910 Tripterygium wilfordii HOM05D007902 ORTHO05D009839 1.6e-23 113.6 151 45.7
arahy.Tifrunner.gnm1.ann1.C7E7HV Arachis hypogaea HOM05D007902 ORTHO05D009839 2.7e-23 112.8 149 42.3
arahy.Tifrunner.gnm1.ann1.0H4UJT Arachis hypogaea HOM05D007902 ORTHO05D009839 6.0e-23 111.7 149 41.6
FAN01G1070 Fragaria x ananassa HOM05D001122 ORTHO05D001877 6.0e-23 111.7 151 44.4
Cc02_g05590 Coffea canephora HOM05D007902 ORTHO05D009839 1.5e-21 107.1 181 38.7
Psat1g014880 Pisum sativum HOM05D007902 ORTHO05D009839 5.6e-21 105.1 150 40.0
FAN06G1561 Fragaria x ananassa HOM05D007902 ORTHO05D009839 7.4e-21 104.8 166 42.8
PSO017G6410 Papaver somniferum HOM05D007902 ORTHO05D009839 9.6e-21 104.4 174 37.9
Hund13474 Selenicereus undatus HOM05D007902 ORTHO05D009839 4.8e-20 102.1 181 38.7
Rhsim09G0183800 Rhododendron simsii HOM05D007902 ORTHO05D009839 2.4e-19 99.8 205 34.6
A08p12840 Brassica napus HOM05D007902 ORTHO05D009839 1.2e-18 97.4 92 62.0
Medtr0191s0020 Medicago truncatula HOM05D007902 ORTHO05D009839 2.0e-18 96.7 156 40.4
Atru.chr12.150 Acer truncatum HOM05D005928 ORTHO05D007500 3.8e-17 92.4 179 39.7
PSO407G0011 Papaver somniferum HOM05D007902 ORTHO05D009839 3.8e-17 92.4 155 38.7
BcaNung01853 Brassica carinata HOM05D003223 ORTHO05D014735 4.9e-17 92.0 68 64.7
Sc10g0002880 Simmondsia chinensis HOM05D007902 ORTHO05D009839 2.5e-16 89.7 80 53.8
PGSC0003DMG400029078 Solanum tuberosum HOM05D007902 ORTHO05D009839 2.5e-16 89.7 118 45.8
A10p30870 Brassica napus HOM05D000044 ORTHO05D000051 5.5e-16 88.6 106 53.8
TAR623G0840 Trochodendron aralioides HOM05D007902 ORTHO05D009839 4.6e-15 85.5 81 59.3
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 1.8e-14 83.6 195 29.7
Nitab4.5_0002713g0030 Nicotiana tabacum HOM05D007902 ORTHO05D009839 2.3e-14 83.2 155 36.8
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 1.9e-13 80.1 143 35.7
BolC4t25019H Brassica oleracea HOM05D000108 ORTHO05D012076 1.3e-12 77.4 50 70.0
unitig_52.g16781 Utricularia gibba HOM05D007902 ORTHO05D009839 2.8e-12 76.3 148 33.1
LjContig00357g0001230 Lotus japonicus HOM05D007902 ORTHO05D009839 3.7e-12 75.9 159 32.7
PGSC0003DMG400025304 Solanum tuberosum HOM05D000727 ORTHO05D000541 5.3e-11 72.0 182 26.9
CDE07G0481 Ceratophyllum demersum HOM05D007902 ORTHO05D009839 1.5e-10 70.5 126 37.3
Os08g0101100 Oryza sativa ssp. japonica HOM05D000727 ORTHO05D000541 2.0e-10 70.1 154 29.9
COL.COLO4_08802 Corchorus olitorius HOM05D000576 ORTHO05D000368 2.6e-10 69.7 56 62.5
Hund09512 Selenicereus undatus HOM05D000727 ORTHO05D000541 3.4e-10 69.3 187 28.9
BolC4t26224H Brassica oleracea HOM05D007902 ORTHO05D009839 4.5e-10 68.9 39 79.5
AUR62032906 Chenopodium quinoa HOM05D000727 ORTHO05D000541 4.5e-10 68.9 202 27.2
PSO206G0034 Papaver somniferum HOM05D000727 ORTHO05D000541 4.5e-10 68.9 148 30.4
Duzib132G0609 Durio zibethinus HOM05D000727 ORTHO05D000541 5.9e-10 68.6 168 30.4
Sc25g0001400 Simmondsia chinensis HOM05D000727 ORTHO05D000541 5.9e-10 68.6 194 25.8
Ah.01g011600 Amaranthus hybridus HOM05D000727 ORTHO05D000541 7.7e-10 68.2 189 25.9
AUR62017747 Chenopodium quinoa HOM05D000727 ORTHO05D000541 7.7e-10 68.2 204 27.0
Thecc.02G153200 Theobroma cacao HOM05D000727 ORTHO05D000541 7.7e-10 68.2 179 30.7
TAR622G0466 Trochodendron aralioides HOM05D000727 ORTHO05D000541 7.7e-10 68.2 161 29.8
Carub.0006s2120 Capsella rubella HOM05D000727 ORTHO05D000541 1.0e-09 67.8 187 26.2
Duzib248G1122 Durio zibethinus HOM05D000727 ORTHO05D000541 1.0e-09 67.8 179 33.0
HPP92_014761 Vanilla planifolia HOM05D000727 ORTHO05D000541 1.0e-09 67.8 162 29.0
Lalb_Chr17g0347071 Lupinus albus HOM05D007902 ORTHO05D009839 1.3e-09 67.4 87 41.4
PSO339G3557 Papaver somniferum HOM05D000727 ORTHO05D000541 1.3e-09 67.4 148 29.7
GSVIVG01034361001 Vitis vinifera HOM05D000727 ORTHO05D000541 1.3e-09 67.4 184 26.1
ATR0124G023 Amborella trichopoda HOM05D000727 ORTHO05D000541 2.2e-09 66.6 183 26.2
Hma1.2p1_0513F.1_g169510 Hydrangea macrophylla HOM05D000727 ORTHO05D000541 2.2e-09 66.6 186 25.8
MBI03_g13448_MAGBIO Magnolia biondii HOM05D000727 ORTHO05D000541 2.2e-09 66.6 162 28.4
THA.LOC104818386 Tarenaya hassleriana HOM05D000727 ORTHO05D000541 2.2e-09 66.6 171 28.1
BcaC02g09961 Brassica carinata HOM05D001334 ORTHO05D001119 3.8e-09 65.9 42 71.4
BolC4t23447H Brassica oleracea HOM05D013651 ORTHO05D013480 5.0e-09 65.5 102 41.2
BolC6t36021H Brassica oleracea HOM05D013651 ORTHO05D013480 5.0e-09 65.5 102 41.2
BolC7t44774H Brassica oleracea HOM05D013651 ORTHO05D013480 5.0e-09 65.5 102 41.2
Dinv02932 Davidia involucrata HOM05D000727 ORTHO05D000541 5.0e-09 65.5 176 29.5
Nitab4.5_0002707g0040 Nicotiana tabacum HOM05D000727 ORTHO05D000541 5.0e-09 65.5 172 25.6
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 6.5e-09 65.1 126 33.3
BcaB04g19869 Brassica carinata HOM05D000727 ORTHO05D000541 8.5e-09 64.7 173 26.6
BcaNung03729 Brassica carinata HOM05D000727 ORTHO05D000541 8.5e-09 64.7 144 28.5
Thhalv10004817m.g Eutrema salsugineum HOM05D000727 ORTHO05D000541 8.5e-09 64.7 176 26.7
Sopen04g004000 Solanum pennellii HOM05D000727 ORTHO05D000541 8.5e-09 64.7 161 28.0
Actinidia04069 Actinidia chinensis HOM05D000727 ORTHO05D000541 1.1e-08 64.3 182 26.4
Oeu036108.1 Olea europaea HOM05D000727 ORTHO05D000541 1.4e-08 63.9 190 28.9
CSS0018830 Camellia sinensis var. sinensis HOM05D000727 ORTHO05D000541 2.5e-08 63.2 192 26.0
Solyc04g008820.3 Solanum lycopersicum HOM05D000727 ORTHO05D000541 2.5e-08 63.2 175 25.7
TWI53G1801 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 2.5e-08 63.2 167 27.5
BcaC04g23495 Brassica carinata HOM05D000727 ORTHO05D000541 4.2e-08 62.4 167 25.7
C09p07710 Brassica napus HOM05D000727 ORTHO05D000541 4.2e-08 62.4 167 25.7
BolC3t20084H Brassica oleracea HOM05D013651 ORTHO05D013480 4.2e-08 62.4 101 39.6
HanXRQChr17g0540661 Helianthus annuus HOM05D000727 ORTHO05D000541 4.2e-08 62.4 210 26.7
Nn3g18557 Nelumbo nucifera HOM05D000727 ORTHO05D000541 4.2e-08 62.4 185 25.9
Atru.chr11.63 Acer truncatum HOM05D000727 ORTHO05D000541 5.5e-08 62.0 189 27.0
A09p06950 Brassica napus HOM05D000727 ORTHO05D000541 5.5e-08 62.0 170 26.5
BolC9t53688H Brassica oleracea HOM05D000727 ORTHO05D000541 5.5e-08 62.0 152 26.3
BraA09t36343Z Brassica rapa HOM05D000727 ORTHO05D000541 5.5e-08 62.0 170 26.5
COL.COLO4_33133 Corchorus olitorius HOM05D000727 ORTHO05D000541 5.5e-08 62.0 182 31.3
DCAR_030351 Daucus carota HOM05D000727 ORTHO05D000541 5.5e-08 62.0 160 25.6
Gorai.008G147700 Gossypium raimondii HOM05D000727 ORTHO05D000541 5.5e-08 62.0 174 30.5
RhsimUnG0102400 Rhododendron simsii HOM05D000727 ORTHO05D000541 5.5e-08 62.0 166 24.7
AL6G34700 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 7.2e-08 61.6 185 26.5
AT5G23420 Arabidopsis thaliana HOM05D000727 ORTHO05D000541 9.4e-08 61.2 184 26.6
Cc11_g04510 Coffea canephora HOM05D000727 ORTHO05D000541 1.2e-07 60.8 166 27.1
Gohir.A12G133000 Gossypium hirsutum HOM05D000727 ORTHO05D000541 1.2e-07 60.8 176 30.1
Gohir.D12G136500 Gossypium hirsutum HOM05D000727 ORTHO05D000541 1.2e-07 60.8 152 30.9
PGR044G1367 Punica granatum HOM05D000727 ORTHO05D000541 1.2e-07 60.8 177 29.4
AL6G30600 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 1.6e-07 60.5 167 26.9
Ciclev10016587m.g Citrus clementina HOM05D000727 ORTHO05D000541 1.6e-07 60.5 214 24.8
Dinv17654 Davidia involucrata HOM05D000727 ORTHO05D000541 1.6e-07 60.5 184 26.1
Aa31LG11G2850 Aethionema arabicum HOM05D000727 ORTHO05D000541 2.1e-07 60.1 184 26.6
MD13G1001900 Malus domestica HOM05D000727 ORTHO05D000541 2.7e-07 59.7 158 29.7
Lalb_Chr02g0144141 Lupinus albus HOM05D000727 ORTHO05D000541 3.6e-07 59.3 190 27.9
CsaV3_5G021890 Cucumis sativus L. HOM05D000727 ORTHO05D000541 4.6e-07 58.9 170 25.9
Eucgr.J00336 Eucalyptus grandis HOM05D000727 ORTHO05D000541 4.6e-07 58.9 171 25.1
SGA_v2.0_scaffold127G33972 Striga asiatica HOM05D000727 ORTHO05D000541 6.1e-07 58.5 174 27.6
ECA246G0005 Erigeron canadensis HOM05D000727 ORTHO05D000541 7.9e-07 58.2 184 26.6
Prupe.1G350700 Prunus persica HOM05D000727 ORTHO05D000541 1.0e-06 57.8 166 25.9
Sp2g23750 Schrenkiella parvula HOM05D000727 ORTHO05D000541 1.0e-06 57.8 175 25.1
BraA02t09046Z Brassica rapa HOM05D000727 ORTHO05D000541 1.4e-06 57.4 215 24.2
Cpa.g.sc247.1 Carica papaya HOM05D000727 ORTHO05D000541 1.4e-06 57.4 158 27.2
SalBow2G1580 Salvia bowleyana HOM05D000727 ORTHO05D000541 1.4e-06 57.4 159 26.4
TWI74G1375 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 1.4e-06 57.4 170 28.2
MSTRG.13668 Avicennia marina HOM05D000727 ORTHO05D000541 1.8e-06 57.0 180 25.0
unitig_699.g19642 Utricularia gibba HOM05D001166 ORTHO05D000992 2.3e-06 56.6 131 31.3
Aqoxy3G04324 Aquilegia oxysepala HOM05D000727 ORTHO05D000541 3.0e-06 56.2 189 25.4
MSTRG.2077 Avicennia marina HOM05D000727 ORTHO05D000541 3.0e-06 56.2 180 24.4
CAN.G419.9 Capsicum annuum HOM05D000727 ORTHO05D000541 3.0e-06 56.2 156 23.7
A02p40980 Brassica napus HOM05D000727 ORTHO05D000541 5.1e-06 55.5 195 23.6
Sed0009333 Sechium edule HOM05D000727 ORTHO05D000541 6.7e-06 55.1 193 23.8
C04p34590 Brassica napus HOM05D000108 ORTHO05D012076 8.8e-06 54.7 37 67.6
VMungo0720G2558 Vigna mungo HOM05D000727 ORTHO05D000541 8.8e-06 54.7 222 25.7


User provided reference genes

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