Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g35750 Schrenkiella parvula HOM05D011591 ORTHO05D010376 6.6e-76 287.3 150 100.0
Thhalv10014931m.g Eutrema salsugineum HOM05D011591 ORTHO05D010376 3.9e-60 235.0 150 80.0
C09p69280 Brassica napus HOM05D011591 ORTHO05D010376 4.0e-57 224.9 150 78.0
BolC9t59672H Brassica oleracea HOM05D011591 ORTHO05D010376 4.0e-57 224.9 150 78.0
A10p28930 Brassica napus HOM05D011591 ORTHO05D010376 5.2e-57 224.6 150 78.0
BraA10t44940Z Brassica rapa HOM05D011591 ORTHO05D010376 5.2e-57 224.6 150 78.0
AT5G07160 Arabidopsis thaliana HOM05D011591 ORTHO05D010376 2.8e-42 175.6 143 65.7
AL6G17350 Arabidopsis lyrata HOM05D011591 ORTHO05D010376 6.9e-41 171.0 143 64.3
Carub.0006s0608 Capsella rubella HOM05D011591 ORTHO05D010376 1.1e-35 153.7 169 52.7
BcaC06g32470 Brassica carinata HOM05D011591 ORTHO05D010376 9.0e-33 144.1 86 82.6
THA.LOC104810699 Tarenaya hassleriana HOM05D011591 ORTHO05D010376 1.9e-27 126.3 145 50.3
Manes.18G136300 Manihot esculenta HOM05D011591 ORTHO05D010376 4.5e-16 88.6 117 43.6
Haze_24379 Corylus avellana HOM05D028161 ORTHO05D010376 1.7e-15 86.7 127 41.7
Cfa011740 Carpinus fangiana HOM05D028161 ORTHO05D010376 3.8e-15 85.5 125 40.8
Thecc.09G353600 Theobroma cacao HOM05D020455 ORTHO05D010376 2.5e-14 82.8 112 42.0
MELO3C020524.2 Cucumis melo HOM05D039867 ORTHO05D010376 4.6e-13 78.6 101 43.6
Sed0000970 Sechium edule HOM05D011591 ORTHO05D010376 4.6e-13 78.6 110 41.8
Hma1.2p1_1974F.1_g309630 Hydrangea macrophylla HOM05D010709 ORTHO05D010376 6.1e-13 78.2 115 42.6
QL01p039514 Quercus lobata HOM05D011591 ORTHO05D010376 1.4e-12 77.0 109 41.3
Sabra09G0056900 Salix brachista HOM05D011591 ORTHO05D010376 1.8e-12 76.6 108 41.7
FAN11G1101 Fragaria x ananassa HOM05D008445 ORTHO05D010376 6.7e-12 74.7 129 40.3
Potri.009G075000 Populus trichocarpa HOM05D020455 ORTHO05D010376 6.7e-12 74.7 108 40.7
FAN21G0777 Fragaria x ananassa HOM05D002172 ORTHO05D010376 8.8e-12 74.3 107 44.9
FvH4_3g39200 Fragaria vesca HOM05D040535 ORTHO05D010376 1.1e-11 73.9 107 44.9
CSS0041982 Camellia sinensis var. sinensis HOM05D010709 ORTHO05D010376 3.1e-09 65.9 144 31.2
Gohir.D05G108050 Gossypium hirsutum HOM05D020455 ORTHO05D010376 3.1e-09 65.9 95 42.1
Gorai.009G112200 Gossypium raimondii HOM05D020455 ORTHO05D010376 3.1e-09 65.9 95 42.1
Gohir.A05G107850 Gossypium hirsutum HOM05D020455 ORTHO05D010376 4.1e-09 65.5 95 41.1
TWI23G0692 Tripterygium wilfordii HOM05D002172 ORTHO05D002167 5.3e-09 65.1 125 36.0
SHI19189 Sapria himalayana HOM05D011591 ORTHO05D010376 7.7e-08 61.2 103 41.7
CSS0033974 Camellia sinensis var. sinensis HOM05D010709 ORTHO05D010376 1.3e-07 60.5 120 33.3
CDE04G2153 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 1.3e-07 60.5 136 33.1
CDE03G0342 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 2.2e-07 59.7 100 36.0
Cc01_g14580 Coffea canephora HOM05D010709 ORTHO05D010376 2.9e-07 59.3 93 38.7
arahy.Tifrunner.gnm1.ann1.EA8GWL Arachis hypogaea HOM05D020455 ORTHO05D010376 3.8e-07 58.9 98 35.7
CSS0009595 Camellia sinensis var. sinensis HOM05D002172 ORTHO05D002167 3.8e-07 58.9 95 38.9
CAN.G318.5 Capsicum annuum HOM05D002172 ORTHO05D002167 3.8e-07 58.9 131 32.1
PGSC0003DMG401007810 Solanum tuberosum HOM05D002172 ORTHO05D002167 3.8e-07 58.9 132 31.1
Actinidia32624 Actinidia chinensis HOM05D010709 ORTHO05D010376 5.0e-07 58.5 115 35.7
Lalb_Chr03g0030941 Lupinus albus HOM05D002172 ORTHO05D002167 5.0e-07 58.5 99 35.4
Mapoly0019s0040 Marchantia polymorpha HOM05D001917 ORTHO05D002167 5.0e-07 58.5 103 35.0
Lalb_Chr17g0345251 Lupinus albus HOM05D012059 ORTHO05D013484 6.5e-07 58.2 143 32.2
Sc12g0003320 Simmondsia chinensis HOM05D002172 ORTHO05D002167 6.5e-07 58.2 100 36.0
TWI14G1374 Tripterygium wilfordii HOM05D002172 ORTHO05D002167 8.5e-07 57.8 125 32.8
Ah.01g003880 Amaranthus hybridus HOM05D002172 ORTHO05D002167 1.1e-06 57.4 100 35.0
CDE02G3937 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 1.1e-06 57.4 100 35.0
Pp3c24_10470 Physcomitrium patens HOM05D002172 ORTHO05D002167 1.1e-06 57.4 146 28.8
Solyc12g010800.2 Solanum lycopersicum HOM05D002172 ORTHO05D002167 1.1e-06 57.4 132 31.1
Sopen12g006170 Solanum pennellii HOM05D002172 ORTHO05D002167 1.1e-06 57.4 132 31.1
TWI74G1424 Tripterygium wilfordii HOM05D002172 ORTHO05D010376 1.1e-06 57.4 108 29.6
BcaC02g12484 Brassica carinata HOM05D002172 ORTHO05D002167 1.4e-06 57.0 95 36.8
A05p02920 Brassica napus HOM05D002172 ORTHO05D002167 1.4e-06 57.0 95 36.8
C04p03550 Brassica napus HOM05D002172 ORTHO05D002167 1.4e-06 57.0 95 36.8
Os01g0756200 Oryza sativa ssp. japonica HOM05D002172 ORTHO05D002167 1.4e-06 57.0 94 38.3
TAR627G0822 Trochodendron aralioides HOM05D002172 ORTHO05D002167 1.4e-06 57.0 90 36.7
BcaC07g40326 Brassica carinata HOM05D002172 ORTHO05D002167 1.9e-06 56.6 94 37.2
C08p33640 Brassica napus HOM05D002172 ORTHO05D002167 1.9e-06 56.6 94 37.2
BolC8t50961H Brassica oleracea HOM05D002172 ORTHO05D002167 1.9e-06 56.6 94 37.2
Peaxi162Scf00384g00069 Petunia axillaris HOM05D002172 ORTHO05D002167 1.9e-06 56.6 132 30.3
Pp3c5_20330 Physcomitrium patens HOM05D002172 ORTHO05D002167 1.9e-06 56.6 97 36.1
TAR624G0475 Trochodendron aralioides HOM05D002172 ORTHO05D002167 1.9e-06 56.6 98 34.7
TAR624G0577 Trochodendron aralioides HOM05D002172 ORTHO05D002167 1.9e-06 56.6 98 34.7
arahy.Tifrunner.gnm1.ann1.NC1Z37 Arachis hypogaea HOM05D000516 ORTHO05D010376 2.5e-06 56.2 98 34.7
Dinv14958 Davidia involucrata HOM05D002172 ORTHO05D002167 2.5e-06 56.2 110 33.6
Dinv19980 Davidia involucrata HOM05D002172 ORTHO05D002167 2.5e-06 56.2 98 36.7
Rhsim13G0066500 Rhododendron simsii HOM05D010709 ORTHO05D010376 2.5e-06 56.2 146 29.5
AUR62038993 Chenopodium quinoa HOM05D002172 ORTHO05D002167 3.2e-06 55.8 125 31.2
Manes.03G103800 Manihot esculenta HOM05D002172 ORTHO05D002167 3.2e-06 55.8 101 37.6
Manes.13G139500 Manihot esculenta HOM05D002172 ORTHO05D002167 3.2e-06 55.8 103 35.0
PGR142G3291 Punica granatum HOM05D002172 ORTHO05D002167 3.2e-06 55.8 94 37.2
arahy.Tifrunner.gnm1.ann1.56J7W4 Arachis hypogaea HOM05D012059 ORTHO05D013484 4.2e-06 55.5 99 35.4
COL.COLO4_14489 Corchorus olitorius HOM05D002172 ORTHO05D002167 4.2e-06 55.5 75 37.3
Pp3c6_7520 Physcomitrium patens HOM05D002172 ORTHO05D002167 4.2e-06 55.5 97 36.1
Actinidia10984 Actinidia chinensis HOM05D002172 ORTHO05D002167 5.5e-06 55.1 98 35.7
HPP92_020291 Vanilla planifolia HOM05D002172 ORTHO05D002167 5.5e-06 55.1 97 35.1
ECA240G3701 Erigeron canadensis HOM05D002172 ORTHO05D002167 7.2e-06 54.7 95 35.8
HanXRQChr13g0391241 Helianthus annuus HOM05D002172 ORTHO05D002167 7.2e-06 54.7 95 34.7
vmacro11903 Vaccinium macrocarpon HOM05D002172 ORTHO05D002167 7.2e-06 54.7 93 37.6
Zm00001eb370720 Zea mays HOM05D002172 ORTHO05D002167 7.2e-06 54.7 94 36.2
EL10Ac9g20854 Beta vulgaris HOM05D002172 ORTHO05D002167 9.4e-06 54.3 95 35.8
HanXRQChr03g0071001 Helianthus annuus HOM05D002172 ORTHO05D002167 9.4e-06 54.3 149 28.2
Zm00001eb152810 Zea mays HOM05D002172 ORTHO05D002167 9.4e-06 54.3 94 36.2


User provided reference genes

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