Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 3.2e-47 191.4 97 100.0
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 5.2e-42 174.1 97 86.6
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 4.8e-35 151.0 97 79.4
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 1.1e-34 149.8 93 76.3
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 1.1e-34 149.8 93 76.3
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 4.0e-34 147.9 93 74.2
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 4.0e-34 147.9 93 74.2
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 4.5e-33 144.4 97 77.3
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 5.8e-33 144.1 95 75.8
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 5.4e-31 137.5 84 75.0
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 1.8e-29 132.5 77 80.5
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 2.1e-27 125.6 97 62.9
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 2.8e-27 125.2 97 61.9
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 3.7e-27 124.8 97 62.9
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 7.6e-25 117.1 97 60.8
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 9.9e-25 116.7 97 60.8
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 9.3e-23 110.2 95 57.9
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 3.3e-20 101.7 97 52.6
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 7.6e-17 90.5 65 60.0
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 1.0e-16 90.1 91 49.5
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 1.0e-16 90.1 84 53.6
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 1.0e-16 90.1 83 55.4
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 3.8e-16 88.2 86 54.7
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 1.9e-15 85.9 93 46.2
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 2.5e-15 85.5 95 41.1
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 3.2e-15 85.1 90 44.4
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 3.2e-15 85.1 90 50.0
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 4.2e-15 84.7 98 42.9
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 4.2e-15 84.7 93 39.8
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 9.3e-15 83.6 84 51.2
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 9.3e-15 83.6 86 45.3
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 1.2e-14 83.2 92 41.3
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 2.7e-14 82.0 93 37.6
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 3.5e-14 81.6 94 41.5
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 3.5e-14 81.6 93 48.4
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 3.5e-14 81.6 89 42.7
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 4.6e-14 81.3 85 43.5
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 4.6e-14 81.3 94 43.6
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 4.6e-14 81.3 93 45.2
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 6.0e-14 80.9 92 47.8
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 7.9e-14 80.5 93 45.2
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 1.0e-13 80.1 92 45.7
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 1.0e-13 80.1 93 40.9
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 1.0e-13 80.1 85 43.5
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.3e-13 79.7 88 47.7
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 1.3e-13 79.7 90 45.6
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 1.8e-13 79.3 90 47.8
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 2.3e-13 79.0 90 44.4
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 2.3e-13 79.0 68 51.5
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 3.0e-13 78.6 93 41.9
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 3.9e-13 78.2 85 47.1
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 3.9e-13 78.2 84 40.5
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 5.1e-13 77.8 66 53.0
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 5.1e-13 77.8 93 38.7
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 6.7e-13 77.4 82 43.9
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 6.7e-13 77.4 90 43.3
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 6.7e-13 77.4 90 43.3
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 6.7e-13 77.4 90 43.3
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 6.7e-13 77.4 92 42.4
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 1.1e-12 76.6 93 35.5
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 1.5e-12 76.3 106 38.7
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.5e-12 76.3 100 40.0
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 1.5e-12 76.3 84 42.9
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 1.5e-12 76.3 89 40.4
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 1.9e-12 75.9 85 43.5
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.9e-12 75.9 84 44.0
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 4.3e-12 74.7 93 37.6
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 4.3e-12 74.7 83 43.4
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 5.7e-12 74.3 91 37.4
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 7.4e-12 73.9 95 42.1
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 7.4e-12 73.9 95 42.1
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 7.4e-12 73.9 85 44.7
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 9.7e-12 73.6 84 45.2
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 9.7e-12 73.6 96 36.5
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 1.3e-11 73.2 93 38.7
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 1.3e-11 73.2 82 43.9
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 1.6e-11 72.8 93 40.9
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 1.6e-11 72.8 90 38.9
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.6e-11 72.8 87 43.7
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 1.6e-11 72.8 88 43.2
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 2.8e-11 72.0 93 39.8
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 2.8e-11 72.0 61 50.8
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 3.7e-11 71.6 61 50.8
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 3.7e-11 71.6 97 37.1
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 4.8e-11 71.2 65 49.2
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 6.3e-11 70.9 95 35.8
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 6.3e-11 70.9 83 41.0
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 8.2e-11 70.5 87 42.5
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 8.2e-11 70.5 87 42.5
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 8.2e-11 70.5 93 41.9
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 8.2e-11 70.5 90 38.9
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 1.1e-10 70.1 90 37.8
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 1.1e-10 70.1 85 43.5
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 1.1e-10 70.1 65 49.2
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 1.1e-10 70.1 93 38.7
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.8e-10 69.3 82 42.7
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.8e-10 69.3 90 35.6
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 1.8e-10 69.3 85 40.0
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 1.8e-10 69.3 78 48.7
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 2.4e-10 68.9 90 36.7
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 3.1e-10 68.6 87 36.8
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 4.1e-10 68.2 86 41.9
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 4.1e-10 68.2 92 38.0
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 5.3e-10 67.8 92 35.9
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 6.9e-10 67.4 94 39.4
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 1.2e-09 66.6 90 34.4
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 1.5e-09 66.2 67 41.8
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 2.0e-09 65.9 63 44.4
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 2.0e-09 65.9 63 44.4
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 2.6e-09 65.5 65 44.6
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 2.6e-09 65.5 66 40.9
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 2.6e-09 65.5 90 35.6
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 3.4e-09 65.1 87 36.8
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 4.5e-09 64.7 92 34.8
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 4.5e-09 64.7 92 34.8
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 7.6e-09 63.9 66 40.9
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 1.0e-08 63.5 67 38.8
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 1.0e-08 63.5 66 39.4
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 2.2e-08 62.4 90 35.6
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 2.9e-08 62.0 90 32.2
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 2.9e-08 62.0 90 35.6
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 2.9e-08 62.0 90 35.6
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 2.9e-08 62.0 90 35.6
Aa31LG2G14360 Aethionema arabicum HOM05D005649 ORTHO05D006837 5.0e-08 61.2 68 42.6
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 5.0e-08 61.2 53 52.8
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 1.1e-07 60.1 64 39.1
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 1.4e-07 59.7 86 38.4
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 3.2e-07 58.5 84 39.3
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 5.5e-07 57.8 89 34.8
SEGI_28530 Sequoiadendron giganteum HOM05D005649 ORTHO05D006837 3.6e-06 55.1 85 31.8


User provided reference genes

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