Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g35350 Schrenkiella parvula HOM05D007846 ORTHO05D010837 6.0e-173 611.3 412 100.0
BcaC06g32486 Brassica carinata HOM05D007846 ORTHO05D010837 8.7e-39 165.6 117 80.3
A10p29250 Brassica napus HOM05D007846 ORTHO05D010837 4.8e-37 159.8 115 78.3
BraA10t44971Z Brassica rapa HOM05D007846 ORTHO05D010837 4.8e-37 159.8 115 78.3
BcaC06g32428 Brassica carinata HOM05D007846 ORTHO05D010837 1.8e-36 157.9 140 67.1
C09p69640 Brassica napus HOM05D007846 ORTHO05D010837 1.8e-36 157.9 140 67.1
BolC9t59707H Brassica oleracea HOM05D007846 ORTHO05D010837 1.8e-36 157.9 140 67.1
BolC8t49462H Brassica oleracea HOM05D007846 ORTHO05D010837 3.2e-33 147.1 135 68.9
C08p18270 Brassica napus HOM05D007846 ORTHO05D010837 7.1e-33 146.0 136 68.4
BraA08t34994Z Brassica rapa HOM05D007846 ORTHO05D010837 2.1e-32 144.4 114 75.4
BraA02t04921Z Brassica rapa HOM05D007846 ORTHO05D010837 4.0e-28 130.2 167 52.1
BcaC03g13199 Brassica carinata HOM05D007846 ORTHO05D010837 5.8e-27 126.3 167 50.9
C02p03150 Brassica napus HOM05D007846 ORTHO05D010837 5.8e-27 126.3 167 50.9
C09p69650 Brassica napus HOM05D007846 ORTHO05D010837 5.8e-27 126.3 187 50.8
BolC2t06277H Brassica oleracea HOM05D007846 ORTHO05D010837 5.8e-27 126.3 167 50.9
BolC9t59708H Brassica oleracea HOM05D007846 ORTHO05D010837 5.8e-27 126.3 187 50.8
Thhalv10014560m.g Eutrema salsugineum HOM05D007846 ORTHO05D010837 1.3e-26 125.2 185 57.3
Thhalv10014587m.g Eutrema salsugineum HOM05D007846 ORTHO05D010837 6.0e-24 116.3 81 85.2
AL6G17830 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 7.9e-24 115.9 122 58.2
Carub.0006s0650 Capsella rubella HOM05D007846 ORTHO05D010837 1.9e-22 111.3 124 59.7
AT5G07520 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 7.4e-22 109.4 120 57.5
Sp6g35340 Schrenkiella parvula HOM05D007846 ORTHO05D371621 8.4e-18 95.9 117 71.8
Carub.0006s0658 Capsella rubella HOM05D007846 ORTHO05D010837 1.1e-17 95.5 146 47.9
AL6G17910 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 1.4e-17 95.1 153 46.4
A10p29260 Brassica napus HOM05D007846 ORTHO05D010837 5.5e-17 93.2 189 42.9
BraA10t44972Z Brassica rapa HOM05D007846 ORTHO05D010837 5.5e-17 93.2 189 42.9
BcaB01g06046 Brassica carinata HOM05D007846 ORTHO05D010837 1.6e-16 91.7 91 62.6
BolC3t12914H Brassica oleracea HOM05D007846 ORTHO05D010837 1.6e-16 91.7 91 62.6
Thhalv10013795m.g Eutrema salsugineum HOM05D007846 ORTHO05D195878 1.6e-16 91.7 136 58.1
Aa31LG3G18890 Aethionema arabicum HOM05D007846 ORTHO05D010837 2.1e-16 91.3 130 47.7
Carub.0006s0651 Capsella rubella HOM05D007846 ORTHO05D010837 2.1e-16 91.3 93 62.4
AL6G17840 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 3.5e-16 90.5 91 63.7
AT5G07530 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 4.6e-16 90.1 94 59.6
CARHR205620 Cardamine hirsuta HOM05D007846 ORTHO05D010837 6.1e-16 89.7 114 50.0
AT5G07600 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 1.0e-15 89.0 150 43.3
A03p03350 Brassica napus HOM05D007846 ORTHO05D010837 1.8e-15 88.2 124 51.6
BcaB01g05692 Brassica carinata HOM05D007846 ORTHO05D010837 2.3e-15 87.8 97 58.8
C03p03790 Brassica napus HOM05D007846 ORTHO05D010837 6.7e-15 86.3 126 49.2
BcaB01g06047 Brassica carinata HOM05D007846 ORTHO05D010837 8.7e-15 85.9 103 56.3
BcaC06g32487 Brassica carinata HOM05D007846 ORTHO05D010837 5.7e-14 83.2 84 64.3
BcaB01g06048 Brassica carinata HOM05D007846 ORTHO05D010837 9.7e-14 82.4 86 60.5
BcaC06g32488 Brassica carinata HOM05D021341 ORTHO05D093304 3.7e-13 80.5 82 57.3
Sp6g35330 Schrenkiella parvula HOM05D007846 ORTHO05D021761 4.8e-13 80.1 77 62.3
AT5G07510 Arabidopsis thaliana HOM05D007846 ORTHO05D038626 8.2e-13 79.3 71 64.8
A03p03340 Brassica napus HOM05D007846 ORTHO05D010837 3.1e-12 77.4 91 56.0
BraA03t09686Z Brassica rapa HOM05D007846 ORTHO05D010837 3.1e-12 77.4 91 56.0
C09p69670 Brassica napus HOM05D007846 ORTHO05D021761 4.1e-12 77.0 74 60.8
BolC9t59710H Brassica oleracea HOM05D007846 ORTHO05D021761 4.1e-12 77.0 74 60.8
BcaB05g21610 Brassica carinata HOM05D007846 ORTHO05D010837 5.3e-12 76.6 111 48.6
A10p29300 Brassica napus HOM05D007846 ORTHO05D021761 6.9e-12 76.3 74 60.8
BraA10t44974Z Brassica rapa HOM05D007846 ORTHO05D021761 6.9e-12 76.3 74 60.8
AL6G17810 Arabidopsis lyrata HOM05D007846 ORTHO05D038626 9.0e-12 75.9 123 47.2
BcaC06g32424 Brassica carinata HOM05D007846 ORTHO05D021761 2.0e-11 74.7 69 62.3
AT5G07540 Arabidopsis thaliana HOM05D007846 ORTHO05D031404 7.7e-11 72.8 73 58.9
BolC3t12915H Brassica oleracea HOM05D000805 ORTHO05D000624 1.3e-10 72.0 75 57.3
Sp6g35320 Schrenkiella parvula HOM05D000805 ORTHO05D000624 1.3e-10 72.0 70 61.4
C03p03800 Brassica napus HOM05D000805 ORTHO05D000624 1.7e-10 71.6 75 57.3
Thhalv10015089m.g Eutrema salsugineum HOM05D000805 ORTHO05D000624 2.2e-10 71.2 70 60.0
BcaB01g06049 Brassica carinata HOM05D007846 ORTHO05D000624 2.9e-10 70.9 71 59.2
Carub.0006s0653 Capsella rubella HOM05D007846 ORTHO05D000624 3.8e-10 70.5 79 51.9
Thhalv10015090m.g Eutrema salsugineum HOM05D007846 ORTHO05D000624 3.8e-10 70.5 76 56.6
AL6G17850 Arabidopsis lyrata HOM05D007846 ORTHO05D031404 5.0e-10 70.1 73 58.9
BcaC06g32423 Brassica carinata HOM05D007846 ORTHO05D023961 1.1e-09 68.9 72 56.9
A10p29310 Brassica napus HOM05D007846 ORTHO05D023961 1.1e-09 68.9 72 56.9
C09p69680 Brassica napus HOM05D007846 ORTHO05D023961 1.1e-09 68.9 72 56.9
BolC9t59711H Brassica oleracea HOM05D007846 ORTHO05D023961 1.1e-09 68.9 72 56.9
BraA10t44975Z Brassica rapa HOM05D007846 ORTHO05D023961 1.1e-09 68.9 72 56.9
BcaC06g32490 Brassica carinata HOM05D007846 ORTHO05D000624 1.9e-09 68.2 73 56.2
A03p03360 Brassica napus HOM05D000805 ORTHO05D000624 1.9e-09 68.2 75 54.7
BraA03t09687Z Brassica rapa HOM05D000805 ORTHO05D000624 1.9e-09 68.2 75 54.7
Sp6g35310 Schrenkiella parvula HOM05D007846 ORTHO05D000624 1.9e-09 68.2 76 51.3
CARHR205610 Cardamine hirsuta HOM05D007846 ORTHO05D000624 4.2e-09 67.0 76 51.3
BcaC03g13197 Brassica carinata HOM05D007846 ORTHO05D010837 9.4e-09 65.9 85 56.5
C02p03180 Brassica napus HOM05D007846 ORTHO05D010837 9.4e-09 65.9 85 56.5
BolC2t06280H Brassica oleracea HOM05D007846 ORTHO05D010837 9.4e-09 65.9 85 56.5
AT5G07550 Arabidopsis thaliana HOM05D007846 ORTHO05D000624 1.2e-08 65.5 79 48.1
BraA02t04922Z Brassica rapa HOM05D007846 ORTHO05D010837 1.2e-08 65.5 85 56.5
CARHR205600 Cardamine hirsuta HOM05D007846 ORTHO05D012592 1.2e-08 65.5 76 48.7
C02p03200 Brassica napus HOM05D007846 ORTHO05D012592 2.7e-08 64.3 76 47.4
BolC2t06282H Brassica oleracea HOM05D007846 ORTHO05D012592 2.7e-08 64.3 76 47.4
BraA02t04924Z Brassica rapa HOM05D007846 ORTHO05D012592 3.6e-08 63.9 104 40.4
CARHR205580 Cardamine hirsuta HOM05D007846 ORTHO05D012592 4.6e-08 63.5 71 52.1
AL6G17870 Arabidopsis lyrata HOM05D007846 ORTHO05D012592 6.1e-08 63.2 77 46.8
BcaB05g21609 Brassica carinata HOM05D000805 ORTHO05D012592 7.9e-08 62.8 76 47.4
TAR629G3054 Trochodendron aralioides HOM05D000805 ORTHO05D000624 7.9e-08 62.8 92 45.7
AL6G17860 Arabidopsis lyrata HOM05D007846 ORTHO05D000624 1.4e-07 62.0 79 44.3
Cpa.g.sc13.249 Carica papaya HOM05D000805 ORTHO05D000624 1.8e-07 61.6 92 42.4
Sp6g35300 Schrenkiella parvula HOM05D000805 ORTHO05D012592 1.8e-07 61.6 77 48.1
AT5G07560 Arabidopsis thaliana HOM05D007846 ORTHO05D012592 2.3e-07 61.2 79 44.3
Aa31LG3G18860 Aethionema arabicum HOM05D007846 ORTHO05D000624 5.1e-07 60.1 78 43.6
BraA02t04923Z Brassica rapa HOM05D000805 ORTHO05D012592 6.7e-07 59.7 76 44.7
C02p03190 Brassica napus HOM05D000805 ORTHO05D012592 8.8e-07 59.3 76 43.4
BolC2t06281H Brassica oleracea HOM05D000805 ORTHO05D012592 8.8e-07 59.3 76 43.4
Sp2g24820 Schrenkiella parvula HOM05D013628 ORTHO05D015917 8.8e-07 59.3 76 48.7
Thhalv10014500m.g Eutrema salsugineum HOM05D000805 ORTHO05D012592 1.1e-06 58.9 74 45.9
AT5G07571 Arabidopsis thaliana HOM05D000805 ORTHO05D012592 1.5e-06 58.5 83 47.0
Carub.0006s0652 Capsella rubella HOM05D007846 ORTHO05D031404 1.5e-06 58.5 62 56.5
BcaC06g32425 Brassica carinata HOM05D021341 ORTHO05D024077 2.5e-06 57.8 46 71.7
A10p29270 Brassica napus HOM05D021341 ORTHO05D024077 2.5e-06 57.8 46 71.7
C09p69660 Brassica napus HOM05D021341 ORTHO05D024077 2.5e-06 57.8 46 71.7
BolC9t59709H Brassica oleracea HOM05D021341 ORTHO05D024077 2.5e-06 57.8 46 71.7
BraA10t44973Z Brassica rapa HOM05D021341 ORTHO05D024077 2.5e-06 57.8 46 71.7
TAR629G3395 Trochodendron aralioides HOM05D000225 ORTHO05D002520 3.3e-06 57.4 76 46.1
Actinidia13613 Actinidia chinensis HOM05D000805 ORTHO05D000624 4.3e-06 57.0 93 39.8
BolC2t11502H Brassica oleracea HOM05D000805 ORTHO05D000624 4.3e-06 57.0 90 43.3
BolC3t12917H Brassica oleracea HOM05D000805 ORTHO05D012592 4.3e-06 57.0 74 48.6
Thhalv10015579m.g Eutrema salsugineum HOM05D000805 ORTHO05D196068 4.3e-06 57.0 74 43.2
Gohir.A07G222700 Gossypium hirsutum HOM05D000805 ORTHO05D000624 4.3e-06 57.0 70 52.9
Gohir.D07G229400 Gossypium hirsutum HOM05D000805 ORTHO05D000624 4.3e-06 57.0 70 52.9
Gorai.001G264500 Gossypium raimondii HOM05D000805 ORTHO05D000624 4.3e-06 57.0 70 52.9
COL.COLO4_37336 Corchorus olitorius HOM05D000805 ORTHO05D000624 5.7e-06 56.6 66 51.5
Glyma.16G071800 Glycine max HOM05D000805 ORTHO05D000624 5.7e-06 56.6 56 57.1
Medtr5g035040 Medicago truncatula HOM05D006231 ORTHO05D007857 5.7e-06 56.6 73 46.6
C02p54410 Brassica napus HOM05D000805 ORTHO05D000624 7.4e-06 56.2 90 42.2
C03p03820 Brassica napus HOM05D000805 ORTHO05D012592 7.4e-06 56.2 67 49.3
TAR636G2754 Trochodendron aralioides HOM05D000805 ORTHO05D000624 7.4e-06 56.2 92 40.2
BcaC07g38876 Brassica carinata HOM05D007846 ORTHO05D091870 9.7e-06 55.8 59 55.9
ECA233G2751 Erigeron canadensis HOM05D000805 ORTHO05D000624 9.7e-06 55.8 82 45.1
Migut.F00529 Erythranthe guttata HOM05D000805 ORTHO05D000624 9.7e-06 55.8 90 40.0
Os09g0324000 Oryza sativa ssp. japonica HOM05D000805 ORTHO05D000624 9.7e-06 55.8 68 47.1
Sp2g16790 Schrenkiella parvula HOM05D000805 ORTHO05D000624 9.7e-06 55.8 74 45.9


User provided reference genes

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