Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 0.0e+00 1172.9 580 100.0
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 1.2e-311 1072.4 602 89.9
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 1.5e-306 1055.4 601 87.9
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 5.9e-306 1053.5 604 88.7
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 5.5e-304 1047.0 602 87.7
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 7.9e-303 1043.1 603 87.4
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.4e-302 1042.3 602 87.0
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 1.9e-301 1038.5 606 87.3
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 2.2e-300 1035.0 604 87.3
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 2.5e-296 1021.5 574 89.4
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 1.3e-281 972.6 602 83.1
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 6.1e-279 963.8 603 80.4
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.2e-274 949.5 603 80.1
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 2.9e-273 944.9 602 79.6
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 1.6e-271 939.1 605 78.5
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 1.6e-271 939.1 607 78.1
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 5.2e-270 934.1 603 79.4
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 6.8e-270 933.7 605 78.0
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 3.7e-268 927.9 523 88.5
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 4.8e-268 927.5 603 78.8
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 2.4e-267 925.2 604 77.0
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 4.1e-267 924.5 605 78.8
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 1.2e-266 922.9 605 77.5
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.7e-266 921.8 896 58.4
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 3.5e-266 921.4 604 76.7
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 7.7e-266 920.2 604 77.2
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 5.0e-265 917.5 606 76.6
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 1.1e-264 916.4 603 76.8
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 7.2e-264 913.7 606 76.7
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 2.1e-263 912.1 607 76.6
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 6.1e-263 910.6 604 77.3
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 1.1e-256 889.8 580 77.9
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 5.8e-253 877.5 574 75.6
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 2.2e-252 875.5 576 75.3
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 6.4e-252 874.0 611 72.2
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 8.3e-252 873.6 581 74.4
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 1.1e-251 873.2 604 72.5
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.9e-251 872.5 574 75.4
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.9e-251 872.5 574 75.4
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 1.9e-251 872.5 579 74.8
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 3.2e-251 871.7 577 75.2
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 9.2e-251 870.2 577 75.0
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 9.2e-251 870.2 577 75.0
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 9.2e-251 870.2 603 73.1
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 1.2e-250 869.8 604 73.0
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 2.7e-250 868.6 613 72.3
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 6.0e-250 867.5 574 74.9
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 7.8e-250 867.1 613 71.9
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.0e-249 866.7 574 74.9
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 1.7e-249 865.9 604 72.7
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 3.0e-249 865.1 580 74.3
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 1.1e-248 863.2 611 72.2
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 1.1e-248 863.2 615 71.7
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 7.3e-248 860.5 602 72.3
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 7.3e-248 860.5 578 74.9
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 7.3e-248 860.5 606 71.8
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 9.5e-248 860.1 578 74.6
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 1.6e-247 859.4 585 73.5
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 1.1e-246 856.7 576 74.1
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 4.0e-246 854.7 582 72.9
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 6.8e-246 854.0 623 71.1
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 6.8e-246 854.0 574 74.0
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 1.2e-245 853.2 577 73.7
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.2e-245 853.2 623 70.9
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 2.0e-245 852.4 575 74.3
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 4.4e-245 851.3 592 72.3
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 9.8e-245 850.1 623 70.6
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 9.8e-245 850.1 575 73.0
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.2e-244 849.0 623 70.8
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 2.2e-244 849.0 604 71.0
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 2.2e-244 849.0 586 73.5
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 4.1e-243 844.7 583 72.0
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 5.4e-243 844.3 580 73.6
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 2.1e-242 842.4 581 71.3
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 2.1e-242 842.4 605 70.1
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 2.7e-242 842.0 579 72.5
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 2.7e-242 842.0 601 70.7
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 3.5e-242 841.6 577 72.8
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 4.6e-242 841.3 564 73.9
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 6.0e-242 840.9 590 71.9
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 6.0e-242 840.9 600 70.7
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 1.3e-241 839.7 604 71.0
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 3.0e-241 838.6 573 72.6
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 3.0e-241 838.6 576 72.6
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 6.6e-241 837.4 605 69.6
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 8.6e-241 837.0 614 68.9
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 1.1e-240 836.6 601 69.9
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 1.5e-240 836.3 605 70.9
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 1.5e-240 836.3 588 70.4
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 1.9e-240 835.9 605 70.2
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 1.9e-240 835.9 558 73.8
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 3.3e-240 835.1 607 69.9
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 4.3e-240 834.7 582 73.5
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 9.5e-240 833.6 606 69.6
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 9.5e-240 833.6 612 69.1
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 2.8e-239 832.0 584 72.4
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 8.1e-239 830.5 580 71.7
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 4.0e-238 828.2 575 71.1
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 5.2e-238 827.8 625 68.2
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 1.5e-237 826.2 545 74.5
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 1.5e-237 826.2 556 73.9
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 2.0e-237 825.9 608 69.6
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 4.4e-237 824.7 588 71.1
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 4.4e-237 824.7 596 70.6
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 9.9e-237 823.5 576 72.2
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 2.2e-236 822.4 580 71.4
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 2.2e-236 822.4 627 67.3
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 2.2e-236 822.4 595 69.9
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 2.9e-236 822.0 608 69.7
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 1.1e-235 820.1 607 68.4
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 2.7e-234 815.5 614 68.6
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 2.7e-234 815.5 706 61.0
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 6.0e-234 814.3 556 73.9
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 3.0e-233 812.0 603 68.5
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 1.1e-232 810.1 574 70.0
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 1.6e-231 806.2 599 68.1
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 6.8e-230 800.8 575 70.8
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 2.7e-226 788.9 558 71.0
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 1.4e-222 776.5 641 64.6
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 4.2e-219 765.0 607 65.9
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 7.8e-218 760.8 532 72.2
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 1.6e-215 753.1 589 65.0
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 2.8e-215 752.3 561 66.8
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 7.6e-205 717.6 502 72.1
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 3.8e-204 715.3 942 46.1
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 3.5e-202 708.8 607 59.6
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.5e-200 703.4 471 79.4
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 9.0e-198 694.1 394 85.3
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 3.8e-188 662.1 603 58.9
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 4.2e-187 658.7 577 60.8
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 1.2e-181 640.6 528 65.0
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 1.0e-172 610.9 477 65.2
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 1.7e-172 610.1 567 54.7
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 4.5e-165 585.5 340 86.2
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 5.9e-165 585.1 481 69.9
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 5.2e-153 545.4 417 67.9
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 1.4e-137 494.2 558 48.9
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 1.7e-135 487.3 307 78.5
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 3.5e-117 426.4 350 57.7
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 1.1e-102 378.3 422 45.3
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 4.5e-96 356.3 417 45.1
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 6.0e-93 345.9 225 79.1
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 5.3e-89 332.8 489 38.9
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 2.6e-80 303.9 176 83.5
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 7.4e-75 285.8 405 39.8
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 3.9e-68 263.5 266 55.6
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 5.9e-64 249.6 369 35.5
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 4.1e-57 226.9 239 51.9
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 4.1e-49 200.3 233 48.5
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 4.1e-49 200.3 233 48.5
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 3.6e-45 187.2 168 58.3
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 2.3e-44 184.5 109 85.3
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 2.3e-44 184.5 171 56.7
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 4.0e-44 183.7 111 74.8
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 2.3e-28 131.3 72 84.7
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 4.6e-24 117.1 140 52.1
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 4.6e-24 117.1 140 52.1
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 2.7e-16 91.3 49 75.5
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 2.7e-16 91.3 49 75.5
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 3.5e-16 90.9 105 51.4
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 1.1e-14 85.9 46 80.4
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 2.8e-13 81.3 42 78.6
CDE05G0837 Ceratophyllum demersum HOM05D004337 ORTHO05D043897 4.7e-13 80.5 79 55.7
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 3.4e-11 74.3 48 64.6
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 4.9e-10 70.5 81 45.7
CARHR148430 Cardamine hirsuta HOM05D004337 ORTHO05D116339 8.6e-07 59.7 51 66.7


User provided reference genes

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