Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 2.6e-308 1061.2 530 100.0
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 4.1e-282 974.2 487 99.2
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 1.2e-281 972.6 486 99.2
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 3.5e-281 971.1 487 98.8
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 4.6e-281 970.7 487 99.0
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 4.6e-281 970.7 486 99.0
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 1.7e-280 968.8 487 99.0
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 1.7e-280 968.8 487 98.8
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 6.6e-280 966.8 487 98.2
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 1.1e-279 966.1 489 98.6
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 3.3e-279 964.5 487 98.4
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 3.3e-279 964.5 487 98.6
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 5.6e-279 963.8 488 97.1
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 3.6e-278 961.1 487 96.9
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 5.2e-277 957.2 484 97.9
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 1.2e-276 956.1 487 97.5
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 7.5e-276 953.4 485 97.9
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 2.7e-273 944.9 487 95.1
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 3.4e-268 927.9 486 94.0
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 6.0e-265 917.1 485 92.0
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 1.3e-264 916.0 489 90.4
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 1.3e-264 916.0 487 90.6
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 1.7e-264 915.6 485 92.2
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 3.9e-264 914.4 487 90.6
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 3.9e-264 914.4 487 92.6
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 6.6e-264 913.7 487 91.0
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 8.6e-264 913.3 484 91.5
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 1.9e-263 912.1 484 91.3
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 2.5e-263 911.8 487 90.3
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 3.3e-263 911.4 487 92.2
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 3.3e-263 911.4 488 91.8
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 4.3e-263 911.0 487 89.9
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 4.3e-263 911.0 486 92.0
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 5.6e-263 910.6 484 90.7
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 7.3e-263 910.2 484 91.3
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 7.3e-263 910.2 487 91.6
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 7.3e-263 910.2 488 91.6
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 1.2e-262 909.4 485 91.1
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 1.2e-262 909.4 487 89.9
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.6e-262 909.1 487 90.1
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 2.1e-262 908.7 487 90.3
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 2.1e-262 908.7 487 88.7
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 2.1e-262 908.7 487 90.1
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 2.1e-262 908.7 487 90.6
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 2.8e-262 908.3 487 89.9
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 2.8e-262 908.3 486 91.4
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 2.8e-262 908.3 486 90.3
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 2.8e-262 908.3 484 90.9
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.8e-262 908.3 486 91.4
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 3.6e-262 907.9 486 91.6
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 4.7e-262 907.5 487 89.3
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 6.2e-262 907.1 487 91.0
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 6.2e-262 907.1 487 89.9
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 8.1e-262 906.7 484 90.5
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 8.1e-262 906.7 491 89.6
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.1e-261 906.4 487 91.6
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 1.4e-261 906.0 480 91.5
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 1.8e-261 905.6 487 91.6
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 2.4e-261 905.2 484 90.7
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 2.4e-261 905.2 486 90.5
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 2.4e-261 905.2 486 90.5
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 3.1e-261 904.8 486 91.6
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 3.1e-261 904.8 485 91.1
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 4.0e-261 904.4 484 90.7
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 6.8e-261 903.7 487 89.9
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 6.8e-261 903.7 486 92.0
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 6.8e-261 903.7 487 91.4
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 8.9e-261 903.3 486 90.5
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 1.5e-260 902.5 484 91.3
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.6e-260 901.7 486 90.5
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 2.6e-260 901.7 487 90.8
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 3.4e-260 901.4 484 91.5
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 3.4e-260 901.4 483 90.5
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 5.8e-260 900.6 486 91.4
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 5.8e-260 900.6 465 95.1
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 7.6e-260 900.2 485 89.9
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 9.9e-260 899.8 486 89.7
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.3e-259 899.4 487 89.3
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 1.3e-259 899.4 487 89.7
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 1.7e-259 899.0 487 90.3
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 2.2e-259 898.7 487 89.9
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 2.2e-259 898.7 486 90.5
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 6.4e-259 897.1 492 89.8
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 6.4e-259 897.1 487 89.5
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 8.4e-259 896.7 485 89.3
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 8.4e-259 896.7 487 89.5
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 1.1e-258 896.3 479 91.0
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 2.4e-258 895.2 487 88.9
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 4.2e-258 894.4 487 89.1
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 4.2e-258 894.4 484 89.7
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 4.2e-258 894.4 487 87.9
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 5.4e-258 894.0 487 88.3
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 5.4e-258 894.0 493 90.3
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 1.2e-257 892.9 486 90.5
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 1.2e-257 892.9 486 89.5
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 1.6e-257 892.5 484 89.5
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 2.1e-257 892.1 495 89.9
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 3.5e-257 891.3 465 94.8
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 6.0e-257 890.6 483 89.9
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 7.8e-257 890.2 483 90.1
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 7.8e-257 890.2 479 90.8
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 1.0e-256 889.8 477 91.0
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 1.7e-256 889.0 487 89.3
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 5.1e-256 887.5 482 89.4
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 8.1e-254 880.2 468 90.4
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 1.4e-253 879.4 437 94.3
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 4.9e-251 870.9 460 92.4
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 2.1e-249 865.5 460 92.8
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 2.7e-249 865.1 488 88.5
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 8.7e-248 860.1 436 92.9
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 1.3e-246 856.3 436 92.0
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 2.8e-246 855.1 483 87.4
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 3.4e-244 848.2 433 90.5
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 5.8e-244 847.4 439 91.1
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 3.0e-240 835.1 431 89.3
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 3.3e-239 831.6 407 96.3
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 2.8e-238 828.6 434 88.7
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 1.2e-236 823.2 408 95.1
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 7.6e-236 820.5 406 94.6
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 2.9e-235 818.5 405 94.6
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 8.4e-235 817.0 407 94.6
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 1.4e-229 799.7 433 86.8
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 2.4e-221 772.3 486 79.0
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 4.1e-221 771.5 384 94.5
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 5.9e-220 767.7 427 83.4
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 2.9e-219 765.4 436 82.3
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 2.5e-218 762.3 421 82.7
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 1.4e-205 719.9 376 90.7
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 1.7e-203 713.0 481 76.7
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.5e-202 709.9 393 87.8
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 2.7e-193 679.1 371 90.3
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.1e-189 665.2 346 91.3
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 9.5e-186 654.1 395 75.7
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.1e-181 639.0 486 70.6
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 6.1e-177 624.8 315 93.7
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.0e-172 609.8 509 66.4
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.0e-171 607.4 486 68.3
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 6.2e-169 598.2 486 67.9
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 1.9e-165 586.6 332 88.9
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 8.6e-147 524.6 279 88.9
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 3.5e-140 502.7 351 72.4
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 1.3e-126 457.6 275 76.4
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 7.4e-114 415.2 203 96.1
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 2.6e-98 363.6 180 92.2
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 2.0e-95 354.0 191 86.4
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 2.2e-94 350.5 172 97.1
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 2.6e-90 337.0 171 92.4
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 6.3e-81 305.8 487 41.3
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 8.8e-75 285.4 146 91.1
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 1.2e-68 265.0 146 87.0
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 3.4e-66 256.9 164 81.7
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 1.4e-64 251.5 127 95.3
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 2.0e-63 247.7 127 88.2
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 1.0e-59 235.3 147 84.4
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.9e-53 214.5 259 43.6
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 8.0e-52 209.1 100 96.0
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.7e-49 201.4 102 93.1
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 5.0e-46 189.9 127 78.7
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 5.6e-37 159.8 102 78.4
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 1.1e-35 155.6 77 98.7
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 1.1e-35 155.6 77 98.7
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 2.2e-33 147.9 108 66.7
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 1.1e-29 135.6 69 98.6
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 5.6e-29 133.3 71 91.5
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 3.6e-28 130.6 197 37.1
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.4e-27 127.9 68 89.7
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 3.4e-26 124.0 65 89.2
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 3.4e-26 124.0 65 89.2
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 9.9e-26 122.5 66 89.4
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.2e-25 121.3 66 87.9
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 3.9e-22 110.5 83 66.3
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 4.3e-21 107.1 67 68.7
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 3.1e-19 100.9 67 68.7
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.3e-17 95.5 48 91.7
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 9.3e-16 89.4 168 35.1
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 4.3e-13 80.5 71 56.3
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 9.6e-13 79.3 72 56.9
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 2.1e-12 78.2 72 56.9
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 1.7e-09 68.6 61 57.4
Nitab4.5_0027010g0010 Nicotiana tabacum HOM05D003867 ORTHO05D004593 6.7e-06 56.6 61 63.9
BolC2t06325H Brassica oleracea HOM05D003867 ORTHO05D105722 8.7e-06 56.2 39 69.2


User provided reference genes

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