Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g33605 Schrenkiella parvula HOM05D004540 ORTHO05D004852 1.7e-41 172.9 138 100.0
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 4.9e-17 91.7 46 93.5
BcaB01g05659 Brassica carinata HOM05D004540 ORTHO05D004852 1.3e-14 83.6 46 84.8
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 1.7e-14 83.2 45 86.7
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 1.7e-14 83.2 41 90.2
A03p04260 Brassica napus HOM05D004540 ORTHO05D004852 1.7e-14 83.2 45 86.7
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 1.7e-14 83.2 45 86.7
BolC3t13005H Brassica oleracea HOM05D004540 ORTHO05D004852 1.7e-14 83.2 45 86.7
BraA03t09770Z Brassica rapa HOM05D004540 ORTHO05D004852 1.7e-14 83.2 45 86.7
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 2.3e-14 82.8 43 88.4
BraA10t44817Z Brassica rapa HOM05D004540 ORTHO05D004852 3.9e-14 82.0 43 88.4
BcaB08g37180 Brassica carinata HOM05D004540 ORTHO05D004852 6.6e-14 81.3 42 85.7
C09p67710 Brassica napus HOM05D004540 ORTHO05D004852 6.6e-14 81.3 42 85.7
BolC9t59533H Brassica oleracea HOM05D004540 ORTHO05D004852 6.6e-14 81.3 42 85.7
CARHR203600 Cardamine hirsuta HOM05D004540 ORTHO05D004852 6.6e-14 81.3 45 88.9
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 1.9e-13 79.7 46 84.8
Carub.0006s0822 Capsella rubella HOM05D004540 ORTHO05D004852 6.2e-12 74.7 38 86.8
BcaC03g13276 Brassica carinata HOM05D004540 ORTHO05D004852 1.8e-11 73.2 45 80.0
C02p04070 Brassica napus HOM05D004540 ORTHO05D004852 1.8e-11 73.2 45 80.0
BolC2t06369H Brassica oleracea HOM05D004540 ORTHO05D004852 1.8e-11 73.2 45 80.0
AT5G09805 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 3.1e-11 72.4 37 86.5
BraA02t05000Z Brassica rapa HOM05D004540 ORTHO05D004852 1.2e-10 70.5 45 75.6
A02p00160 Brassica napus HOM05D004540 ORTHO05D004852 3.4e-10 68.9 45 75.6
BcaB05g21528 Brassica carinata HOM05D004540 ORTHO05D004852 1.7e-09 66.6 47 76.6
Aa31LG3G17310 Aethionema arabicum HOM05D004540 ORTHO05D004852 3.7e-09 65.5 37 78.4
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 1.2e-07 60.5 39 79.5
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 1.6e-07 60.1 44 72.7
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 2.1e-07 59.7 39 79.5
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 2.1e-07 59.7 39 79.5
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 2.1e-07 59.7 39 79.5
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 2.1e-07 59.7 39 79.5
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 2.1e-07 59.7 39 79.5
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 2.1e-07 59.7 39 79.5
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 2.1e-07 59.7 39 79.5
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 2.7e-07 59.3 44 68.2
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 2.7e-07 59.3 44 68.2
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 2.7e-07 59.3 44 68.2
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 2.7e-07 59.3 35 77.1
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 3.5e-07 58.9 37 81.1
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 4.6e-07 58.5 39 76.9
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 7.8e-07 57.8 39 64.1
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 7.8e-07 57.8 41 68.3
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 1.0e-06 57.4 45 60.0
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 5.1e-06 55.1 25 92.0
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 5.1e-06 55.1 25 92.0
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 5.1e-06 55.1 25 92.0
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 5.1e-06 55.1 25 92.0
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 5.1e-06 55.1 25 92.0
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 5.1e-06 55.1 37 62.2
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 5.1e-06 55.1 27 81.5
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 5.1e-06 55.1 27 81.5
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 5.1e-06 55.1 27 81.5
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 6.6e-06 54.7 32 68.8
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 6.6e-06 54.7 32 68.8
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 6.6e-06 54.7 32 68.8
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 6.6e-06 54.7 27 81.5
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 8.6e-06 54.3 25 88.0
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 8.6e-06 54.3 25 88.0
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 8.6e-06 54.3 25 88.0
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 8.6e-06 54.3 25 88.0
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 8.6e-06 54.3 25 88.0
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 8.6e-06 54.3 30 76.7
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 8.6e-06 54.3 30 76.7
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 8.6e-06 54.3 25 88.0
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 8.6e-06 54.3 30 76.7


User provided reference genes

Program Settings