Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 2.6e-192 675.2 347 100.0
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 9.4e-142 507.3 306 84.3
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 6.7e-140 501.1 305 85.2
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 4.3e-139 498.4 308 84.7
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 1.7e-138 496.5 306 85.0
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 1.5e-136 490.0 314 83.4
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 1.3e-135 486.9 308 83.1
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 7.2e-134 481.1 311 82.0
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 2.7e-133 479.2 307 82.7
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 1.8e-129 466.5 295 82.4
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 8.8e-124 447.6 290 80.0
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 5.2e-116 421.8 322 70.2
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 1.8e-105 386.7 255 80.4
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 9.5e-94 347.8 207 87.4
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 5.2e-84 315.5 310 55.5
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 2.9e-82 309.7 319 53.6
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 1.9e-81 307.0 202 77.7
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 4.1e-81 305.8 321 51.7
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 9.2e-81 304.7 274 62.4
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 1.6e-80 303.9 309 53.1
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 3.5e-80 302.8 317 52.4
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 1.0e-79 301.2 308 53.6
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 1.3e-79 300.8 319 52.0
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 1.7e-79 300.4 317 52.4
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 3.9e-79 299.3 312 52.9
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 3.9e-79 299.3 321 51.1
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 6.6e-79 298.5 312 53.8
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 8.6e-79 298.1 314 52.2
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 1.9e-78 297.0 311 52.4
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 4.3e-78 295.8 312 51.9
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 2.8e-77 293.1 311 53.1
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 1.8e-76 290.4 314 50.6
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 4.0e-76 289.3 310 50.6
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 8.9e-76 288.1 310 49.0
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 1.2e-75 287.7 322 49.7
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 1.2e-75 287.7 310 49.0
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 2.0e-75 287.0 311 51.8
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 4.4e-75 285.8 327 48.9
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 7.6e-75 285.0 311 51.1
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 9.9e-75 284.6 329 50.2
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 9.9e-75 284.6 335 50.1
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 1.3e-74 284.3 320 50.0
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 1.3e-74 284.3 310 48.4
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 1.3e-74 284.3 314 52.2
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 1.7e-74 283.9 312 50.0
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 2.2e-74 283.5 311 50.2
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 2.2e-74 283.5 309 51.1
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 6.4e-74 282.0 310 49.7
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 1.1e-73 281.2 311 50.5
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 1.4e-73 280.8 309 49.8
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 2.4e-73 280.0 309 50.5
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 4.1e-73 279.3 313 50.5
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 9.2e-73 278.1 361 45.2
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 9.2e-73 278.1 309 51.1
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 2.7e-72 276.6 308 51.3
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 4.6e-72 275.8 317 48.9
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 2.3e-71 273.5 307 51.1
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 6.6e-71 271.9 317 48.6
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 1.5e-70 270.8 321 48.3
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 2.5e-70 270.0 323 50.2
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 2.5e-70 270.0 318 48.7
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 1.1e-68 264.6 310 51.3
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 9.9e-67 258.1 309 46.0
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 6.4e-66 255.4 308 49.0
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 1.1e-65 254.6 321 47.0
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 2.4e-65 253.4 353 43.3
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 2.4e-65 253.4 261 54.0
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 1.2e-64 251.1 321 44.5
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 3.5e-64 249.6 277 49.5
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 4.6e-64 249.2 321 45.2
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 4.6e-64 249.2 309 46.9
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 1.9e-62 243.8 298 47.0
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 2.5e-62 243.4 321 46.7
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 2.1e-61 240.4 311 45.7
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 3.6e-61 239.6 305 47.5
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 8.1e-61 238.4 266 51.5
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 1.4e-60 237.7 390 40.3
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 1.2e-59 234.6 333 43.2
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 3.2e-57 226.5 195 58.5
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 4.2e-57 226.1 432 36.3
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 7.1e-57 225.3 197 60.4
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 7.3e-54 215.3 301 43.2
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 1.3e-53 214.5 198 57.1
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 2.8e-53 213.4 326 42.9
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 3.4e-51 206.5 315 43.8
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.3e-50 204.5 316 41.8
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 8.4e-50 201.8 307 39.1
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 1.1e-49 201.4 312 42.0
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 1.1e-49 201.4 318 39.0
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 1.6e-45 187.6 332 38.0
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 2.4e-44 183.7 334 35.6
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 3.8e-42 176.4 343 35.0
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 6.5e-42 175.6 371 32.9
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 3.2e-41 173.3 348 37.1
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 4.2e-41 172.9 312 39.1
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 8.7e-39 165.2 232 42.7
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.9e-38 164.1 203 48.8
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 2.8e-37 160.2 172 53.5
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 3.1e-36 156.8 184 48.9
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 5.8e-35 152.5 291 37.5
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 3.8e-34 149.8 227 43.2
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 3.2e-33 146.7 460 28.5
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 7.1e-33 145.6 178 47.2
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 3.7e-29 133.3 165 41.8
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 4.1e-28 129.8 331 32.9
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 9.0e-28 128.6 79 79.7
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 1.4e-25 121.3 334 31.1
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 1.2e-19 101.7 195 34.4
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 1.2e-19 101.7 85 58.8
Sp1g28000 Schrenkiella parvula HOM05D006096 ORTHO05D007775 5.9e-19 99.4 139 46.0
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 5.5e-17 92.8 127 39.4
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 7.9e-16 89.0 54 77.8
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 1.2e-11 75.1 222 30.2
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 3.5e-11 73.6 86 46.5
Aa31LG7G15400 Aethionema arabicum HOM05D006096 ORTHO05D009377 1.7e-10 71.2 117 41.9
Nitab4.5_0004570g0030 Nicotiana tabacum HOM05D006096 ORTHO05D007775 1.1e-09 68.6 79 43.0
CsaV3_UNG124970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 4.2e-09 66.6 68 47.1
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 7.2e-09 65.9 47 61.7
CsaV3_UNG160180 Cucumis sativus L. HOM05D006096 ORTHO05D007775 3.6e-08 63.5 93 43.0
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 2.3e-07 60.8 88 40.9


User provided reference genes

Program Settings