Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 3.0e-154 548.5 280 100.0
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 4.6e-139 498.0 280 88.9
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 2.4e-132 475.7 279 86.7
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 1.2e-131 473.4 279 86.7
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 7.8e-131 470.7 281 87.2
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 6.6e-130 467.6 279 85.7
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 8.7e-130 467.2 279 85.3
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 8.7e-130 467.2 280 85.4
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 5.6e-129 464.5 284 84.9
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 2.8e-128 462.2 283 85.9
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 4.0e-127 458.4 281 85.1
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 3.2e-124 448.7 283 82.7
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 2.7e-123 445.7 281 82.9
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 6.6e-122 441.0 282 81.9
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 4.3e-121 438.3 281 82.2
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 2.3e-114 416.0 238 88.7
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 7.6e-110 401.0 310 71.3
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 4.6e-91 338.6 255 64.3
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 1.4e-87 327.0 245 67.3
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 1.8e-87 326.6 251 64.5
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.8e-87 326.6 253 63.6
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 5.3e-87 325.1 254 63.4
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 6.9e-87 324.7 276 59.8
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 2.0e-86 323.2 254 65.0
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.6e-86 322.8 282 58.9
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 2.6e-86 322.8 266 63.2
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 5.9e-86 321.6 239 64.4
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 7.7e-86 321.2 239 66.9
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 1.0e-85 320.9 234 65.8
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 1.3e-85 320.5 241 67.2
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 1.3e-85 320.5 245 66.5
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 1.3e-85 320.5 270 61.1
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 1.3e-85 320.5 255 64.7
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 2.9e-85 319.3 240 64.6
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 2.9e-85 319.3 237 64.1
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 5.0e-85 318.5 260 61.5
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 6.5e-85 318.2 235 65.1
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 8.5e-85 317.8 237 64.6
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.4e-84 317.0 233 65.2
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 1.9e-84 316.6 263 63.1
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 9.4e-84 314.3 251 61.0
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.6e-83 313.5 233 64.4
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 2.1e-83 313.2 257 61.9
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 2.7e-83 312.8 239 63.2
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 3.6e-83 312.4 274 60.6
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 6.1e-83 311.6 239 63.2
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 7.9e-83 311.2 260 61.2
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 7.9e-83 311.2 274 59.1
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 1.0e-82 310.8 243 64.2
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 1.4e-82 310.5 229 66.8
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 1.8e-82 310.1 237 64.1
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 3.9e-82 308.9 224 67.4
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 3.9e-82 308.9 273 57.9
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 5.1e-82 308.5 234 64.1
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 5.1e-82 308.5 274 57.3
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 6.7e-82 308.1 253 61.7
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 8.8e-82 307.8 239 61.9
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 8.8e-82 307.8 273 57.5
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 2.0e-81 306.6 276 58.3
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 2.0e-81 306.6 235 64.7
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 7.4e-81 304.7 237 62.4
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 1.7e-80 303.5 239 62.8
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 3.7e-80 302.4 233 63.9
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 3.7e-80 302.4 308 51.6
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 6.3e-80 301.6 243 63.8
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 6.3e-80 301.6 236 62.3
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 1.8e-79 300.1 239 63.6
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 1.8e-79 300.1 256 57.8
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 4.1e-79 298.9 258 58.9
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 5.3e-79 298.5 230 63.9
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 5.3e-79 298.5 265 60.0
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 7.0e-79 298.1 257 57.2
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 1.2e-78 297.4 241 62.7
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 1.5e-78 297.0 270 57.0
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 3.5e-78 295.8 265 57.4
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 3.5e-78 295.8 312 52.9
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 7.7e-78 294.7 292 52.7
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 1.7e-77 293.5 239 63.2
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 1.7e-77 293.5 230 63.9
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 2.9e-77 292.7 251 57.8
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 2.9e-77 292.7 261 56.7
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 3.8e-77 292.4 215 66.0
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 5.0e-77 292.0 270 54.8
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 4.2e-76 288.9 239 59.8
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 5.5e-76 288.5 256 59.4
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 5.5e-76 288.5 269 55.8
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 7.2e-76 288.1 250 58.8
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 2.7e-75 286.2 238 61.3
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 6.1e-75 285.0 274 55.1
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 8.0e-75 284.6 275 55.3
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 8.8e-74 281.2 277 52.7
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 2.0e-73 280.0 265 54.0
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 5.7e-73 278.5 260 55.0
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 9.7e-73 277.7 258 55.4
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 2.8e-72 276.2 252 56.3
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 3.7e-72 275.8 260 55.0
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 4.8e-72 275.4 247 55.1
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 4.8e-72 275.4 246 58.1
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 8.2e-72 274.6 248 58.5
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 8.2e-72 274.6 253 56.9
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 1.4e-71 273.9 215 61.4
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 1.4e-71 273.9 265 53.6
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.8e-71 273.5 250 56.8
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 1.8e-71 273.5 248 57.3
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 9.1e-71 271.2 227 59.5
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 2.6e-70 269.6 237 58.6
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 4.5e-70 268.9 203 65.0
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 5.9e-70 268.5 257 54.9
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 1.3e-69 267.3 226 58.4
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 1.7e-69 266.9 229 59.8
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 1.7e-69 266.9 255 56.1
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.7e-69 266.9 263 52.1
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 8.0e-67 258.1 195 65.1
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 4.0e-66 255.8 237 56.5
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 3.7e-64 249.2 287 50.5
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 1.3e-61 240.7 228 53.1
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 2.2e-61 240.0 223 55.2
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.2e-61 240.0 237 51.5
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.9e-61 239.6 291 47.1
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 3.8e-61 239.2 186 65.6
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 5.7e-57 225.3 146 73.3
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 7.5e-57 224.9 259 48.6
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 1.7e-56 223.8 150 70.0
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 1.7e-56 223.8 213 55.4
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 2.2e-56 223.4 222 49.1
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 8.3e-56 221.5 242 48.3
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 1.2e-54 217.6 257 50.6
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 1.7e-53 213.8 148 69.6
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 5.0e-53 212.2 148 65.5
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.9e-52 210.3 264 45.1
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 9.5e-52 208.0 266 43.6
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 1.2e-51 207.6 144 66.0
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 2.0e-49 200.3 145 64.8
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 8.0e-43 178.3 198 49.0
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 1.4e-42 177.6 249 39.0
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.8e-42 177.2 158 53.2
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 1.1e-39 167.9 171 49.1
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 6.0e-38 162.2 175 48.6
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 6.6e-37 158.7 133 60.9
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 4.7e-35 152.5 96 71.9
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 2.7e-30 136.7 210 38.6
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 3.5e-30 136.3 129 54.3
SEGI_02343 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 1.4e-26 124.4 97 61.9
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 1.7e-24 117.5 124 51.6
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 1.4e-23 114.4 243 32.9
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 6.0e-22 109.0 119 47.9
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 7.8e-22 108.6 84 66.7
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 7.8e-22 108.6 238 32.4
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 1.1e-18 98.2 126 45.2
Nitab4.5_0000710g0100 Nicotiana tabacum HOM05D004983 ORTHO05D005847 9.9e-09 65.1 60 51.7
Cfa021669 Carpinus fangiana HOM05D004983 ORTHO05D005847 1.2e-06 58.2 170 30.0
Ca_28882_v3 Cicer arietinum L. HOM05D004983 ORTHO05D005847 2.7e-06 57.0 211 25.1


User provided reference genes

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