Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 1.5e-79 299.3 135 100.0
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 3.1e-77 291.6 135 96.3
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 5.4e-77 290.8 135 96.3
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 5.4e-77 290.8 135 96.3
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 9.1e-77 290.0 135 95.6
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 2.0e-76 288.9 135 94.8
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 3.5e-76 288.1 135 94.8
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 1.7e-75 285.8 135 94.1
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 1.7e-75 285.8 135 94.1
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 2.7e-73 278.5 135 92.6
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 4.7e-73 277.7 135 91.9
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 2.3e-72 275.4 136 91.9
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 4.4e-71 271.2 136 89.7
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 4.4e-71 271.2 136 89.7
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 2.2e-70 268.9 142 86.6
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 6.3e-70 267.3 135 88.1
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 5.9e-68 260.8 135 84.4
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 1.4e-61 239.6 135 76.3
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 5.4e-61 237.7 135 76.3
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 1.2e-60 236.5 135 75.6
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 1.2e-60 236.5 135 75.6
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 2.0e-60 235.7 135 74.8
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 4.6e-60 234.6 135 73.3
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 7.8e-60 233.8 135 73.3
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 1.0e-59 233.4 135 74.8
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 1.7e-59 232.6 135 75.6
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 3.0e-59 231.9 135 74.1
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 3.9e-59 231.5 135 74.8
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 4.3e-58 228.0 147 69.4
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 4.3e-58 228.0 135 74.8
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 7.3e-58 227.3 134 72.4
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 7.3e-58 227.3 135 72.6
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 7.3e-58 227.3 135 71.9
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 2.8e-57 225.3 148 67.6
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 2.8e-57 225.3 135 71.1
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 4.7e-57 224.6 135 71.1
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 6.2e-57 224.2 123 79.7
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 8.0e-57 223.8 135 71.1
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 1.0e-56 223.4 135 72.6
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 1.0e-56 223.4 135 71.9
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 1.4e-56 223.0 135 71.9
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 2.3e-56 222.2 147 67.3
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 2.3e-56 222.2 135 71.1
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.1e-56 221.9 137 73.0
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 3.1e-56 221.9 137 73.0
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 4.0e-56 221.5 137 73.0
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 4.0e-56 221.5 135 71.1
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 5.2e-56 221.1 150 66.7
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 6.8e-56 220.7 150 64.7
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 8.9e-56 220.3 133 69.9
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 1.2e-55 219.9 145 64.1
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 2.6e-55 218.8 123 74.8
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 3.4e-55 218.4 148 64.9
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 3.4e-55 218.4 152 64.5
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 4.4e-55 218.0 148 64.2
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 5.8e-55 217.6 135 70.4
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 5.8e-55 217.6 123 77.2
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 5.8e-55 217.6 123 77.2
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 7.5e-55 217.2 123 77.2
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 7.5e-55 217.2 159 58.5
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 9.8e-55 216.9 130 72.3
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 9.8e-55 216.9 146 65.1
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 1.3e-54 216.5 135 70.4
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 1.3e-54 216.5 130 70.8
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 2.9e-54 215.3 159 61.0
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 2.9e-54 215.3 142 66.2
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 3.7e-54 214.9 133 69.9
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 6.4e-54 214.2 131 71.0
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 8.3e-54 213.8 135 69.6
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 8.3e-54 213.8 123 74.0
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 8.3e-54 213.8 133 69.9
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 8.3e-54 213.8 153 62.1
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 4.1e-53 211.5 149 62.4
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 4.1e-53 211.5 144 64.6
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 7.0e-53 210.7 127 70.9
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 7.0e-53 210.7 149 61.7
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 2.7e-52 208.8 122 72.1
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.5e-52 208.4 133 69.9
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 4.6e-52 208.0 135 68.1
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 6.0e-52 207.6 132 67.4
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 6.0e-52 207.6 133 69.9
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 6.0e-52 207.6 132 68.2
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 7.8e-52 207.2 120 70.0
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 1.0e-51 206.8 147 61.9
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 1.3e-51 206.5 122 71.3
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.3e-51 206.5 135 68.1
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 1.3e-51 206.5 133 66.9
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.3e-51 206.5 145 64.1
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.3e-51 205.7 153 60.1
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 5.0e-51 204.5 144 61.1
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 6.6e-51 204.1 144 61.1
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 6.6e-51 204.1 123 69.9
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 1.1e-50 203.4 132 69.7
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 2.5e-50 202.2 122 69.7
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 2.5e-50 202.2 159 55.3
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 2.5e-50 202.2 126 66.7
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 2.5e-50 202.2 126 66.7
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 2.1e-49 199.1 123 66.7
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 4.7e-49 198.0 138 63.0
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 4.0e-48 194.9 133 65.4
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 1.3e-46 189.9 135 64.4
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 1.7e-46 189.5 124 64.5
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 2.2e-46 189.1 120 65.8
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 3.7e-46 188.3 130 66.9
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 9.2e-45 183.7 130 63.1
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 1.6e-44 183.0 159 53.5
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 7.8e-44 180.6 155 53.5
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.7e-43 179.5 113 65.5
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.7e-43 179.5 113 65.5
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 1.8e-40 169.5 106 68.9
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 2.3e-40 169.1 123 60.2
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 7.6e-39 164.1 174 46.0
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 3.2e-37 158.7 136 52.9
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 2.1e-36 156.0 117 55.6
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 2.3e-35 152.5 124 55.6
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 4.7e-33 144.8 136 46.3
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.1e-29 133.7 144 44.4
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 4.3e-26 121.7 84 61.9
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 4.8e-25 118.2 72 68.1
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 3.8e-22 108.6 59 78.0
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 6.4e-22 107.8 58 75.9
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 1.0e-19 100.5 135 46.7
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.4e-16 90.1 57 66.7
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 5.3e-16 88.2 105 44.8
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 6.9e-16 87.8 81 48.1
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 4.5e-15 85.1 80 47.5
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 5.8e-15 84.7 80 47.5
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 2.9e-14 82.4 114 39.5
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 4.9e-14 81.6 74 51.4
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 4.2e-13 78.6 111 39.6
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 1.0e-11 73.9 75 46.7
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 1.0e-11 73.9 69 49.3
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 8.7e-11 70.9 40 72.5
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 1.9e-10 69.7 102 37.3
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 5.6e-10 68.2 49 59.2
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 2.8e-09 65.9 64 51.6
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 6.2e-09 64.7 68 48.5
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 8.2e-09 64.3 63 52.4
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 8.2e-09 64.3 63 52.4


User provided reference genes

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