Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 2145.2 1124 100.0
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 2066.6 1124 95.5
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 2052.7 1124 94.2
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 2048.5 1124 93.9
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 2041.5 1124 93.9
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 2034.2 1124 92.9
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 2020.0 1128 93.3
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 2020.0 1128 93.1
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 2018.0 1128 93.0
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 2016.1 1128 93.0
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1988.4 1124 92.3
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1961.8 1137 89.6
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1955.3 1124 90.3
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1929.8 1125 89.4
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1928.7 1125 89.2
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1922.5 1124 89.1
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1914.0 1124 88.8
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1862.4 1142 86.9
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1861.7 1129 85.9
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1658.3 1137 74.2
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1651.7 1131 74.3
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1645.9 1140 73.7
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1645.2 1133 74.8
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1642.5 1141 73.5
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1638.6 1142 73.6
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1633.2 1132 73.3
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1631.3 1128 73.8
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1629.8 1133 72.8
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1628.6 1141 73.2
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1624.0 1136 72.5
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1623.6 1143 72.5
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1622.8 1135 73.0
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1615.1 1130 72.0
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1611.7 1129 72.8
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1605.5 1131 71.8
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1600.9 1184 69.8
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1600.1 1132 71.7
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1599.7 1130 72.9
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1598.9 1132 71.6
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1598.2 1128 71.6
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1595.1 1129 71.3
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1594.7 1132 71.1
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1593.6 1132 71.5
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1592.4 1127 71.3
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1590.9 1135 71.2
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1587.8 1140 71.0
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1586.2 1141 70.9
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1585.5 1137 71.2
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1585.1 1145 70.2
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1577.0 1130 71.5
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1574.3 1132 70.1
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1573.1 1133 70.7
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1572.0 1130 71.6
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1570.8 1135 68.8
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1570.8 1132 70.8
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1569.3 1129 70.0
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1563.1 1136 69.3
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1561.6 1136 69.3
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1552.7 1138 69.5
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1550.0 1136 69.3
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1549.6 1139 70.2
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1545.8 1105 71.0
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1544.3 1128 69.6
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1540.0 1130 69.4
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1537.7 1139 68.7
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1537.3 1139 68.8
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1536.9 1124 68.7
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1532.7 1126 69.4
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1530.4 1137 68.2
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1526.1 1138 68.3
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1523.5 1127 69.0
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1520.8 1140 67.9
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1515.0 1139 68.0
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1513.4 1128 68.6
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1505.0 1012 77.2
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1501.5 1127 68.1
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1498.8 1137 67.5
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1486.1 1140 66.5
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1485.3 1126 66.9
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1481.5 1130 66.6
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1480.3 1030 71.9
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1479.5 1132 67.5
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1479.2 1134 66.3
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1475.7 1134 66.3
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1464.9 1148 65.7
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1464.9 1148 65.7
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1464.9 1129 66.3
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1462.2 1074 68.6
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1458.4 1133 66.2
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1458.0 1141 65.6
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1455.3 1105 67.5
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1451.8 1129 65.5
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1435.2 1070 68.8
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1417.5 1073 66.9
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1408.3 1036 67.9
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1362.1 926 74.1
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1337.0 1130 62.7
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1335.1 1127 61.9
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1327.0 929 70.8
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1316.2 1042 64.7
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1308.9 1119 60.0
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1273.5 1108 58.9
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1253.0 1102 57.5
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1232.2 895 69.1
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1201.8 822 74.8
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1194.5 888 67.7
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1119.4 929 62.9
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 0.0e+00 1086.6 1078 51.9
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1080.9 788 70.2
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 1.2e-307 1060.1 1105 50.0
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 9.0e-295 1017.3 1074 49.2
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 6.1e-283 978.0 1082 47.6
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 1.9e-276 956.4 674 70.3
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 6.5e-269 931.4 761 63.1
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 3.7e-240 835.9 601 71.0
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 2.4e-239 833.2 930 52.4
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 2.1e-219 766.9 1116 40.5
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 1.8e-210 737.3 626 59.7
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 1.0e-157 562.0 366 75.4
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 2.6e-145 520.8 422 66.4
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 1.5e-135 488.4 430 61.4
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 2.6e-108 397.9 357 56.9
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 4.0e-101 374.0 1192 27.2
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 3.0e-96 357.8 316 60.1
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 3.5e-89 334.3 1144 27.0
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 3.9e-80 304.3 332 55.1
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 1.9e-71 275.4 366 45.1
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 5.6e-71 273.9 316 50.9
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 1.0e-64 253.1 333 47.1
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 7.6e-60 236.9 320 47.2
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 4.0e-32 144.8 150 57.3
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 6.7e-32 144.1 106 73.6
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 1.1e-26 126.7 112 67.9
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 1.2e-25 123.2 70 78.6
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 2.1e-25 122.5 86 75.6
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 4.7e-25 121.3 667 21.7
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 4.7e-25 121.3 68 79.4
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 6.8e-24 117.5 86 73.3
Lj2g0025677 Lotus japonicus HOM05D005483 ORTHO05D007091 7.5e-07 60.8 73 45.2


User provided reference genes

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