Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g29350 Schrenkiella parvula HOM05D005169 ORTHO05D006436 1.9e-111 406.4 288 100.0
A10p23980 Brassica napus HOM05D005169 ORTHO05D006436 9.4e-55 218.0 218 57.8
BraA10t44462Z Brassica rapa HOM05D005169 ORTHO05D006436 3.6e-54 216.1 218 57.3
BolC9t59083H Brassica oleracea HOM05D005169 ORTHO05D006436 4.7e-54 215.7 218 57.3
C09p62450 Brassica napus HOM05D005169 ORTHO05D006436 2.8e-51 206.5 218 56.4
BcaNung03104 Brassica carinata HOM05D005169 ORTHO05D006436 7.0e-50 201.8 219 69.9
CARHR198620 Cardamine hirsuta HOM05D005169 ORTHO05D006436 5.0e-48 195.7 220 57.7
Thhalv10014646m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 1.9e-47 193.7 218 75.7
AT5G14690 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 3.2e-47 193.0 219 82.6
AL6G25460 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 7.2e-47 191.8 219 57.5
BcaC03g13455 Brassica carinata HOM05D005169 ORTHO05D006436 1.4e-45 187.6 218 50.9
Carub.0006s1286 Capsella rubella HOM05D005169 ORTHO05D006436 1.3e-43 181.0 230 56.1
BraA02t05235Z Brassica rapa HOM05D005169 ORTHO05D006436 9.1e-42 174.9 218 64.7
THA.LOC104821080 Tarenaya hassleriana HOM05D005169 ORTHO05D006436 1.3e-40 171.0 218 47.2
C02p07220 Brassica napus HOM05D005169 ORTHO05D006436 2.6e-36 156.8 122 68.9
BolC2t06654H Brassica oleracea HOM05D005169 ORTHO05D006436 2.6e-36 156.8 122 68.9
AT3G01516 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 1.3e-35 154.5 217 54.4
Aa31LG11G14770 Aethionema arabicum HOM05D005169 ORTHO05D006436 8.3e-35 151.8 249 51.8
Thhalv10021959m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 4.1e-34 149.4 215 46.0
AL3G10640 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 5.9e-33 145.6 214 55.6
CARHR075420 Cardamine hirsuta HOM05D005169 ORTHO05D006436 7.8e-33 145.2 220 42.3
Carub.0003s0056 Capsella rubella HOM05D005169 ORTHO05D006436 3.3e-31 139.8 215 42.3
A05p44490 Brassica napus HOM05D005169 ORTHO05D006436 1.2e-30 137.9 204 42.2
BraA05t23207Z Brassica rapa HOM05D005169 ORTHO05D006436 1.2e-30 137.9 204 42.2
C09p75080 Brassica napus HOM05D005169 ORTHO05D006436 6.1e-30 135.6 175 45.7
BolC5t35156H Brassica oleracea HOM05D005169 ORTHO05D006436 6.1e-30 135.6 175 45.7
Sp3g00540 Schrenkiella parvula HOM05D005169 ORTHO05D006436 6.1e-30 135.6 217 53.0
BcaC05g30410 Brassica carinata HOM05D005169 ORTHO05D006436 1.8e-29 134.0 175 45.1
BcaC05g30449 Brassica carinata HOM05D005169 ORTHO05D006436 1.8e-29 134.0 219 45.7
Aa31LG5G10650 Aethionema arabicum HOM05D005169 ORTHO05D006436 5.2e-29 132.5 215 40.9
QL02p075994 Quercus lobata HOM05D005169 ORTHO05D006436 6.8e-29 132.1 220 39.1
COL.COLO4_28998 Corchorus olitorius HOM05D005169 ORTHO05D006436 1.2e-28 131.3 216 38.9
CiPaw.03G039400 Carya illinoinensis HOM05D005169 ORTHO05D006436 6.4e-27 125.6 220 37.7
Haze_14687 Corylus avellana HOM05D005169 ORTHO05D006436 1.1e-26 124.8 216 37.0
Prupe.3G286300 Prunus persica HOM05D005169 ORTHO05D006436 3.2e-26 123.2 219 37.4
Cfa007415 Carpinus fangiana HOM05D005169 ORTHO05D006436 4.1e-26 122.9 217 35.9
Dinv33480 Davidia involucrata HOM05D005169 ORTHO05D006436 1.2e-25 121.3 222 34.7
Dinv35078 Davidia involucrata HOM05D005169 ORTHO05D006436 2.0e-25 120.6 220 36.4
Actinidia36094 Actinidia chinensis HOM05D005169 ORTHO05D006436 2.7e-25 120.2 215 36.3
vmacro05837 Vaccinium macrocarpon HOM05D005169 ORTHO05D006436 4.6e-25 119.4 219 37.0
MD17G1033200 Malus domestica HOM05D005169 ORTHO05D006436 7.8e-25 118.6 192 37.0
Gorai.006G030600 Gossypium raimondii HOM05D005169 ORTHO05D006436 1.7e-24 117.5 213 35.7
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 3.0e-24 116.7 217 39.2
Potri.001G349700 Populus trichocarpa HOM05D005169 ORTHO05D006436 3.9e-24 116.3 221 35.3
Lju41C36T6 Lonicera japonica HOM05D005169 ORTHO05D006436 5.0e-24 115.9 218 38.1
Gohir.D09G026600 Gossypium hirsutum HOM05D005169 ORTHO05D006436 2.5e-23 113.6 213 35.2
CSS0037801 Camellia sinensis var. sinensis HOM05D005169 ORTHO05D006436 4.3e-23 112.8 221 33.9
TAR622G1423 Trochodendron aralioides HOM05D005169 ORTHO05D006436 1.2e-22 111.3 217 33.2
Gohir.D11G070900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.6e-22 110.9 218 33.9
Gorai.007G076200 Gossypium raimondii HOM05D005169 ORTHO05D006436 1.6e-22 110.9 218 33.9
Thecc.04G011300 Theobroma cacao HOM05D005169 ORTHO05D006436 3.6e-22 109.8 217 41.0
Hma1.2p1_0858F.1_g229310 Hydrangea macrophylla HOM05D005169 ORTHO05D006436 4.7e-22 109.4 218 52.8
Gohir.A09G026900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 6.2e-22 109.0 213 34.7
TAR629G1679 Trochodendron aralioides HOM05D005169 ORTHO05D006436 1.0e-21 108.2 217 35.0
HanXRQChr09g0266101 Helianthus annuus HOM05D005169 ORTHO05D006436 3.1e-21 106.7 179 35.2
Lsat_1_v5_gn_2_91781 Lactuca sativa HOM05D005169 ORTHO05D006436 5.2e-21 105.9 183 36.1
FAN09G4345 Fragaria x ananassa HOM05D005169 ORTHO05D006436 8.9e-21 105.1 184 47.8
CANSAT64G1588 Cannabis sativa HOM05D005169 ORTHO05D006436 1.2e-20 104.8 229 32.8
Sabra16G0229100 Salix brachista HOM05D005169 ORTHO05D006436 1.2e-20 104.8 219 34.2
Gohir.A11G067000 Gossypium hirsutum HOM05D005169 ORTHO05D006436 2.0e-20 104.0 232 31.0
ECA232G1653 Erigeron canadensis HOM05D005169 ORTHO05D006436 3.4e-20 103.2 175 33.7
ClCG09G019030 Citrullus lanatus HOM05D005169 ORTHO05D006436 4.4e-20 102.8 218 33.5
MELO3C021551.2 Cucumis melo HOM05D005169 ORTHO05D006436 4.4e-20 102.8 218 32.6
HanXRQChr07g0198841 Helianthus annuus HOM05D005169 ORTHO05D006436 4.4e-20 102.8 179 37.4
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 7.5e-20 102.1 187 35.3
RcHm_v2.0_Chr2g0172251 Rosa chinensis HOM05D005169 ORTHO05D006436 9.8e-20 101.7 177 53.1
AUR62023410 Chenopodium quinoa HOM05D005169 ORTHO05D006436 2.2e-19 100.5 198 34.3
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 2.2e-19 100.5 214 32.2
TWI56G0416 Tripterygium wilfordii HOM05D005169 ORTHO05D006436 2.2e-19 100.5 187 36.9
Nitab4.5_0002416g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 2.9e-19 100.1 214 30.4
Lsat_1_v5_gn_4_182740 Lactuca sativa HOM05D005169 ORTHO05D006436 3.7e-19 99.8 177 35.6
Nitab4.5_0002306g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 3.7e-19 99.8 214 30.4
PSO478G0492 Papaver somniferum HOM05D005169 ORTHO05D006436 3.7e-19 99.8 224 37.1
Sed0004184 Sechium edule HOM05D005169 ORTHO05D006436 3.7e-19 99.8 220 33.2
Manes.15G165700 Manihot esculenta HOM05D005169 ORTHO05D006436 4.9e-19 99.4 202 38.6
MSTRG.3296 Avicennia marina HOM05D005169 ORTHO05D006436 8.3e-19 98.6 224 31.7
FAN14G0546 Fragaria x ananassa HOM05D005169 ORTHO05D006436 8.3e-19 98.6 187 52.9
Peaxi162Scf00700g00522 Petunia axillaris HOM05D005169 ORTHO05D006436 8.3e-19 98.6 178 32.0
Cc07_g02080 Coffea canephora HOM05D005169 ORTHO05D006436 1.1e-18 98.2 188 33.5
FvH4_6g50860 Fragaria vesca HOM05D005169 ORTHO05D006436 1.1e-18 98.2 187 48.1
Nn3g16854 Nelumbo nucifera HOM05D005169 ORTHO05D006436 1.1e-18 98.2 177 33.9
PGR142G3938 Punica granatum HOM05D005169 ORTHO05D006436 1.1e-18 98.2 177 33.9
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.4e-18 97.8 192 41.1
AUR62013741 Chenopodium quinoa HOM05D005169 ORTHO05D006436 1.9e-18 97.4 198 33.8
Ciclev10016934m.g Citrus clementina HOM05D005169 ORTHO05D006436 2.4e-18 97.1 222 36.0
EL10Ac1g00764 Beta vulgaris HOM05D005169 ORTHO05D006436 4.1e-18 96.3 176 36.9
PSO017G2305 Papaver somniferum HOM05D005169 ORTHO05D006436 9.2e-18 95.1 224 35.7
Oeu014861.1 Olea europaea HOM05D005169 ORTHO05D006436 1.6e-17 94.4 190 30.0
PSO170G4554 Papaver somniferum HOM05D005169 ORTHO05D006436 4.6e-17 92.8 175 33.1
Psat1g056600 Pisum sativum HOM05D005169 ORTHO05D006436 1.0e-16 91.7 173 30.1
DCAR_021693 Daucus carota HOM05D005169 ORTHO05D006436 3.0e-16 90.1 181 35.9
Solyc12g062840.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 3.0e-16 90.1 216 27.3
PGSC0003DMG400000520 Solanum tuberosum HOM05D005169 ORTHO05D006436 5.0e-16 89.4 179 32.4
MBI16_g27097_MAGBIO Magnolia biondii HOM05D005169 ORTHO05D006436 6.6e-16 89.0 185 31.9
SHI27192 Sapria himalayana HOM05D005169 ORTHO05D006436 8.6e-16 88.6 182 30.8
Ah.05g173110 Amaranthus hybridus HOM05D005169 ORTHO05D006436 1.5e-15 87.8 211 34.6
Solyc02g086760.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 1.5e-15 87.8 179 33.5
FAN05G4915 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.9e-15 87.4 219 30.6
Sopen02g031520 Solanum pennellii HOM05D005169 ORTHO05D006436 3.3e-15 86.7 179 34.6
SGA_v2.0_scaffold135G34886 Striga asiatica HOM05D005169 ORTHO05D006436 3.3e-15 86.7 189 29.1
PSO144G0121 Papaver somniferum HOM05D005169 ORTHO05D006436 4.3e-15 86.3 175 45.1
Peaxi162Scf00129g00124 Petunia axillaris HOM05D005169 ORTHO05D006436 9.5e-15 85.1 218 32.6
Migut.K01374 Erythranthe guttata HOM05D005169 ORTHO05D006436 1.6e-14 84.3 178 29.8
Medtr6g406210 Medicago truncatula HOM05D005169 ORTHO05D006436 1.6e-14 84.3 210 28.6
Oeu043043.1 Olea europaea HOM05D005169 ORTHO05D006436 2.8e-14 83.6 92 47.8
Migut.H00106 Erythranthe guttata HOM05D005169 ORTHO05D006436 6.2e-14 82.4 178 31.5
SGA_v2.0_scaffold30G12455 Striga asiatica HOM05D005169 ORTHO05D006436 1.4e-13 81.3 212 34.0
DCAR_015051 Daucus carota HOM05D005169 ORTHO05D006436 1.8e-13 80.9 181 30.9
Psat1g056720 Pisum sativum HOM05D005169 ORTHO05D006436 2.3e-13 80.5 216 26.4
Sopen12g026520 Solanum pennellii HOM05D005169 ORTHO05D006436 2.3e-13 80.5 81 44.4
Sc16g0007930 Simmondsia chinensis HOM05D005169 ORTHO05D006436 4.0e-13 79.7 174 31.6
Lalb_Chr06g0175951 Lupinus albus HOM05D005169 ORTHO05D006436 5.2e-13 79.3 173 36.4
Lalb_Chr21g0319501 Lupinus albus HOM05D005169 ORTHO05D006436 5.2e-13 79.3 174 43.7
SalBow7G2461 Salvia bowleyana HOM05D005169 ORTHO05D006436 5.2e-13 79.3 53 60.4
Nitab4.5_0014517g0010 Nicotiana tabacum HOM05D005169 ORTHO05D006436 8.9e-13 78.6 238 31.1
Oeu062928.1 Olea europaea HOM05D005169 ORTHO05D006436 1.2e-12 78.2 92 43.5
Cpa.g.sc3104.1 Carica papaya HOM05D005169 ORTHO05D006436 4.4e-12 76.3 53 64.2
BcaC08g44071 Brassica carinata HOM05D005169 ORTHO05D006436 9.8e-12 75.1 38 89.5
TPR.G10806 Trifolium pratense HOM05D005169 ORTHO05D006436 1.7e-11 74.3 91 40.7
ATR0730G202 Amborella trichopoda HOM05D005169 ORTHO05D006436 2.2e-11 73.9 174 30.5
CDE07G0703 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 1.1e-10 71.6 49 63.3
BcaC04g22405 Brassica carinata HOM05D005169 ORTHO05D006436 7.1e-10 68.9 38 81.6
C09p19720 Brassica napus HOM05D005169 ORTHO05D006436 7.1e-10 68.9 38 81.6
Glyma.05G006400 Glycine max HOM05D005169 ORTHO05D006436 7.1e-10 68.9 190 30.5
TPR.G35382 Trifolium pratense HOM05D005169 ORTHO05D006436 7.1e-10 68.9 160 28.1
Ah.03g141220 Amaranthus hybridus HOM05D005169 ORTHO05D006436 1.2e-09 68.2 94 39.4
Duzib147G0144 Durio zibethinus HOM05D005169 ORTHO05D006436 7.8e-09 65.5 145 42.1
Glyma.19G006800 Glycine max HOM05D005169 ORTHO05D006436 1.3e-08 64.7 190 30.0
Os01g0638800 Oryza sativa ssp. japonica HOM05D005169 ORTHO05D006436 1.3e-08 64.7 173 27.2
MD09G1031300 Malus domestica HOM05D005169 ORTHO05D006436 5.1e-08 62.8 40 75.0
HPP92_024720 Vanilla planifolia HOM05D005169 ORTHO05D006436 1.5e-07 61.2 47 55.3
Zm00001eb296260 Zea mays HOM05D005169 ORTHO05D006436 1.6e-06 57.8 87 42.5
unitig_899.g15487 Utricularia gibba HOM05D005169 ORTHO05D006436 4.7e-06 56.2 42 52.4


User provided reference genes

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