Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 3.4e-184 648.3 349 100.0
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 1.4e-169 599.7 349 93.1
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 2.4e-169 599.0 349 92.8
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 5.5e-166 587.8 349 91.1
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 1.0e-164 583.6 349 91.7
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 1.0e-164 583.6 349 91.7
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 2.5e-163 578.9 349 90.5
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 1.5e-160 569.7 349 89.1
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 5.9e-160 567.8 352 89.8
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 1.3e-159 566.6 350 89.7
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 1.3e-159 566.6 350 89.7
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 1.7e-159 566.2 349 87.1
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 3.8e-159 565.1 352 89.8
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 5.0e-159 564.7 349 88.8
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 6.5e-159 564.3 349 88.8
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 1.9e-158 562.8 349 88.8
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 9.4e-158 560.5 352 89.2
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 4.7e-149 531.6 347 86.2
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 1.1e-145 520.4 355 83.4
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 6.5e-143 511.1 349 80.5
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 1.4e-113 413.7 351 67.0
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 1.8e-108 396.7 349 63.9
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 5.2e-108 395.2 352 63.4
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 1.5e-107 393.7 352 63.4
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 4.9e-106 388.7 350 64.6
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 1.1e-105 387.5 350 63.7
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 2.0e-104 383.3 350 62.6
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 4.6e-104 382.1 352 63.4
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 7.8e-104 381.3 351 62.1
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 3.0e-103 379.4 351 62.4
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 5.0e-103 378.6 351 64.7
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 1.5e-102 377.1 352 63.9
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 4.3e-102 375.6 352 63.4
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 3.1e-100 369.4 349 62.5
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 1.5e-99 367.1 353 61.5
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 4.4e-99 365.5 350 61.4
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 5.8e-99 365.2 357 60.2
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 5.8e-99 365.2 350 62.9
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 1.1e-97 360.9 352 61.4
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 1.4e-97 360.5 352 61.4
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 1.4e-97 360.5 350 60.9
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 7.1e-97 358.2 352 61.1
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 1.2e-96 357.5 351 62.4
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 1.6e-96 357.1 364 61.0
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 2.1e-96 356.7 354 60.5
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 2.7e-96 356.3 351 60.7
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 6.0e-96 355.1 361 58.7
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 6.0e-96 355.1 350 58.9
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 1.3e-95 354.0 351 61.8
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 2.3e-95 353.2 352 59.4
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 2.3e-95 353.2 352 61.1
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 2.3e-95 353.2 352 61.4
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 3.0e-95 352.8 350 61.4
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 6.6e-95 351.7 359 59.3
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 6.6e-95 351.7 355 59.4
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 8.6e-95 351.3 352 60.8
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.5e-94 350.5 351 60.4
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.5e-94 350.5 351 60.4
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 2.5e-94 349.7 352 59.4
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 9.5e-94 347.8 352 58.5
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 9.5e-94 347.8 353 58.6
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 1.2e-93 347.4 352 58.0
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.2e-93 347.4 352 58.2
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 2.1e-93 346.7 350 58.9
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 2.8e-93 346.3 367 58.0
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 6.2e-93 345.1 420 51.9
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 8.1e-93 344.7 354 59.3
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 1.4e-92 344.0 354 59.0
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 1.8e-92 343.6 350 59.1
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 6.8e-92 341.7 353 59.5
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 1.3e-90 337.4 351 58.4
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 1.3e-90 337.4 365 56.7
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 8.4e-90 334.7 344 57.0
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 8.4e-90 334.7 346 59.8
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 3.2e-89 332.8 352 58.2
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 5.4e-89 332.0 352 58.5
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 5.4e-89 332.0 352 58.5
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 9.2e-89 331.3 356 58.1
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 7.8e-88 328.2 350 56.3
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 1.7e-87 327.0 353 57.8
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 2.3e-87 326.6 353 57.5
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 3.0e-87 326.2 357 57.4
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 1.5e-86 323.9 349 58.2
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 4.7e-85 318.9 301 63.1
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 6.9e-84 315.1 350 55.7
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 1.2e-83 314.3 350 55.7
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 8.4e-82 308.1 371 54.4
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 5.4e-81 305.4 402 51.0
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 1.2e-80 304.3 352 56.0
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 1.2e-80 304.3 341 55.7
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 5.1e-79 298.9 342 55.6
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 7.3e-78 295.0 296 60.1
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 9.9e-75 284.6 357 52.1
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 3.8e-74 282.7 252 63.5
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 4.2e-73 279.3 380 49.2
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 1.8e-71 273.9 351 48.7
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 6.7e-71 271.9 230 70.4
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 3.5e-64 249.6 352 48.9
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 1.9e-62 243.8 352 49.4
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 9.6e-62 241.5 324 50.9
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 1.2e-56 224.6 233 57.5
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 6.7e-55 218.8 335 45.1
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 5.3e-52 209.1 205 62.0
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 2.6e-51 206.8 234 54.7
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 1.3e-47 194.5 317 44.5
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 3.9e-47 193.0 177 63.8
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 1.1e-46 191.4 113 88.5
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 6.3e-45 185.7 101 94.1
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 8.2e-45 185.3 230 52.6
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 1.7e-42 177.6 194 56.7
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 5.5e-41 172.6 142 67.6
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 1.1e-38 164.9 237 45.6
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 1.1e-38 164.9 235 46.4
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 2.8e-37 160.2 123 72.4
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 1.5e-35 154.5 131 64.9
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 1.0e-34 151.8 377 34.7
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 3.8e-34 149.8 201 50.7
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 1.2e-32 144.8 295 35.6
BcaB08g36868 Brassica carinata HOM05D005714 ORTHO05D006812 8.8e-31 138.7 129 70.5
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 4.4e-30 136.3 286 35.7
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 1.3e-26 124.8 226 43.4
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 2.9e-26 123.6 98 69.4
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 8.8e-23 112.1 369 30.6
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 2.0e-19 100.9 275 36.0
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 4.5e-19 99.8 71 73.2
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 5.9e-19 99.4 103 63.1
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 1.0e-18 98.6 92 56.5
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 1.2e-14 85.1 77 62.3
BolC3t18733H Brassica oleracea HOM05D005714 ORTHO05D006812 5.7e-14 82.8 45 88.9
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 8.3e-13 79.0 237 32.1
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 9.1e-12 75.5 95 43.2
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 1.2e-11 75.1 88 55.7
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 1.8e-07 61.2 46 71.7


User provided reference genes

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