Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 0.0e+00 1212.6 618 100.0
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 0.0e+00 1106.3 622 89.5
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 8.5e-311 1069.7 623 86.5
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 1.2e-309 1065.8 616 87.3
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 2.7e-309 1064.7 619 86.9
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 4.6e-309 1063.9 614 86.5
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 6.7e-308 1060.1 620 85.8
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 1.1e-307 1059.3 614 86.2
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 4.8e-306 1053.9 620 86.8
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 3.6e-293 1011.1 614 83.6
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 4.8e-282 974.2 623 79.3
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 1.3e-255 886.3 636 70.6
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 1.1e-241 840.1 605 70.4
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 1.1e-220 770.4 465 85.6
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 1.2e-203 713.8 633 58.1
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 5.8e-203 711.4 640 56.7
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 8.4e-202 707.6 640 58.0
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 2.4e-201 706.1 623 58.7
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 3.5e-200 702.2 610 59.3
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 1.9e-198 696.4 642 57.0
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 1.4e-196 690.3 616 58.6
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 1.5e-195 686.8 621 57.3
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 2.6e-195 686.0 611 58.3
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 4.9e-194 681.8 613 56.3
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 4.9e-194 681.8 640 56.4
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 1.1e-193 680.6 638 55.6
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.1e-193 680.6 638 55.6
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 1.9e-193 679.9 614 58.1
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 4.2e-193 678.7 611 56.6
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 7.1e-193 677.9 610 58.4
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 9.3e-193 677.6 618 56.5
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.2e-192 677.2 640 55.3
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 1.6e-192 676.8 642 54.8
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 3.5e-192 675.6 642 55.5
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 1.3e-191 673.7 615 57.2
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 1.3e-191 673.7 646 54.6
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 3.9e-191 672.2 639 54.9
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 3.9e-191 672.2 613 57.4
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 5.1e-191 671.8 613 56.0
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 5.1e-191 671.8 620 55.8
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 5.6e-190 668.3 500 65.6
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 2.8e-189 666.0 613 55.8
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 1.1e-188 664.1 639 54.8
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 1.4e-188 663.7 545 61.5
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 4.0e-188 662.1 623 54.9
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 5.3e-188 661.8 639 54.8
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 2.0e-187 659.8 637 53.1
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 1.0e-186 657.5 639 53.5
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 4.9e-186 655.2 613 55.5
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 4.9e-186 655.2 634 54.1
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 1.6e-184 650.2 656 52.3
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 7.9e-184 647.9 626 54.3
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 1.3e-183 647.1 624 54.2
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 5.1e-183 645.2 612 54.4
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 6.7e-183 644.8 630 53.8
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 3.1e-180 636.0 627 54.4
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 9.0e-180 634.4 646 51.7
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 9.0e-180 634.4 646 51.5
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 1.5e-179 633.6 441 67.3
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 2.6e-179 632.9 649 52.1
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 1.4e-177 627.1 594 55.2
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 5.5e-177 625.2 606 53.3
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 7.9e-176 621.3 643 51.6
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 1.9e-174 616.7 608 51.5
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 3.1e-172 609.4 632 50.8
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 6.9e-172 608.2 632 51.7
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 1.2e-171 607.4 607 52.4
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 1.3e-170 604.0 619 51.1
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.9e-170 602.8 501 58.7
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 3.8e-170 602.4 494 59.1
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 1.9e-169 600.1 441 63.3
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 3.2e-169 599.4 534 56.0
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 1.8e-167 593.6 644 48.8
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 9.1e-164 581.3 543 55.4
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 1.2e-163 580.9 622 49.2
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 1.2e-163 580.9 620 50.3
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 2.9e-162 576.2 546 54.0
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.1e-161 574.3 683 46.6
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 5.5e-161 572.0 386 68.7
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 1.4e-159 567.4 548 53.6
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 1.5e-158 563.9 402 65.2
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.3e-157 560.8 661 48.3
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 3.8e-154 549.3 611 48.0
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 4.2e-153 545.8 603 49.9
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 2.7e-152 543.1 386 66.1
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 2.3e-151 540.0 554 51.1
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 1.7e-149 533.9 535 51.0
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 6.3e-149 531.9 526 49.6
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 7.2e-145 518.5 387 63.0
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 9.4e-145 518.1 394 62.4
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 9.4e-145 518.1 394 62.4
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 5.2e-143 512.3 387 62.3
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 8.8e-143 511.5 617 47.8
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 2.4e-140 503.4 420 58.8
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 7.7e-139 498.4 528 49.8
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 2.1e-136 490.3 460 52.6
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 6.1e-136 488.8 395 60.8
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.0e-135 488.0 531 50.7
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 2.8e-133 479.9 485 53.0
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 9.2e-132 474.9 530 49.8
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 2.5e-129 466.8 517 47.4
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 2.4e-124 450.3 467 51.6
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 5.0e-122 442.6 455 51.9
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 2.8e-120 436.8 450 49.1
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 7.0e-116 422.2 396 52.8
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 1.3e-114 417.9 481 46.4
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 2.1e-112 410.6 459 49.9
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 3.6e-112 409.8 454 46.5
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 1.4e-111 407.9 342 58.8
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 7.1e-108 395.6 459 43.1
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 8.6e-106 388.7 364 50.5
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 5.8e-102 375.9 264 64.8
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 2.3e-98 364.0 257 66.1
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 1.6e-88 331.3 305 51.8
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 6.2e-88 329.3 530 37.9
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 9.0e-87 325.5 276 55.8
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 1.7e-85 321.2 450 38.4
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 3.3e-81 307.0 391 42.2
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 4.0e-79 300.1 321 52.0
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 2.6e-70 270.8 203 60.1
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 5.1e-66 256.5 455 35.6
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 2.0e-62 244.6 160 71.9
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 1.5e-49 201.8 133 69.2
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 4.4e-41 173.7 195 40.5
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.8e-34 151.8 124 58.9
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 3.4e-33 147.5 124 57.3
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 5.4e-31 140.2 123 53.7
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 2.7e-30 137.9 265 38.1
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 3.6e-27 127.5 130 56.9
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 6.8e-26 123.2 146 50.0
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 5.7e-25 120.2 258 34.5
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 1.0e-21 109.4 206 40.3
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 2.4e-15 88.2 88 47.7
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 4.6e-14 84.0 70 57.1
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 1.1e-12 79.3 224 32.6
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.6e-11 75.5 83 47.0
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 3.1e-10 71.2 136 38.2


User provided reference genes

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