Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 9.6e-112 407.1 252 100.0
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 2.1e-82 309.7 253 73.9
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 2.8e-79 299.3 253 69.6
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 1.4e-78 297.0 250 68.4
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.8e-78 296.6 254 70.1
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 5.3e-78 295.0 255 73.3
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 3.4e-77 292.4 256 76.6
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 3.4e-77 292.4 256 76.6
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 3.4e-77 292.4 256 76.6
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 7.7e-77 291.2 255 72.2
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 6.5e-76 288.1 247 72.5
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 1.1e-75 287.3 252 70.2
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 1.6e-74 283.5 252 69.8
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 2.1e-74 283.1 255 78.4
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 1.0e-73 280.8 233 73.0
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 1.5e-72 276.9 237 72.6
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 1.5e-72 276.9 237 72.6
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 4.2e-67 258.8 256 72.7
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 2.1e-66 256.5 255 65.1
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 2.2e-63 246.5 254 63.8
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 2.0e-61 240.0 256 62.1
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 1.0e-57 227.6 255 67.8
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 3.5e-53 212.6 239 56.5
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 1.7e-52 210.3 252 63.1
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 5.2e-41 172.2 219 50.2
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 8.8e-41 171.4 192 54.7
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 2.8e-39 166.4 196 52.0
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 1.1e-38 164.5 194 52.6
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 2.4e-38 163.3 199 50.8
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 7.0e-38 161.8 206 49.0
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 2.0e-37 160.2 194 51.0
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 2.7e-37 159.8 209 48.8
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 2.7e-37 159.8 225 47.1
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 4.5e-37 159.1 195 50.8
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 4.5e-37 159.1 204 49.0
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 5.9e-37 158.7 196 51.5
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 7.7e-37 158.3 222 50.5
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 1.3e-36 157.5 222 46.4
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.7e-36 157.1 222 46.8
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 1.7e-36 157.1 212 47.2
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 1.7e-36 157.1 189 51.9
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 1.7e-36 157.1 190 49.5
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 2.9e-36 156.4 204 50.5
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 3.8e-36 156.0 217 47.5
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 1.1e-35 154.5 222 46.4
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 1.1e-35 154.5 225 46.7
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 3.3e-35 152.9 198 50.0
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 3.3e-35 152.9 199 54.3
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 3.3e-35 152.9 224 50.0
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 4.2e-35 152.5 229 45.9
CARHR196690 Cardamine hirsuta HOM05D004935 ORTHO05D005676 5.5e-35 152.1 121 68.6
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 5.5e-35 152.1 193 50.3
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 7.2e-35 151.8 227 44.5
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 9.5e-35 151.4 171 61.4
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 9.5e-35 151.4 191 48.7
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 9.5e-35 151.4 221 46.2
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 1.6e-34 150.6 199 48.2
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 2.8e-34 149.8 220 46.4
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 8.0e-34 148.3 222 45.0
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 1.4e-33 147.5 239 41.0
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.8e-33 147.1 113 77.9
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 1.8e-33 147.1 211 46.9
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 1.8e-33 147.1 218 45.9
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 3.0e-33 146.4 196 50.5
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 3.0e-33 146.4 214 43.9
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 3.0e-33 146.4 244 39.8
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 4.0e-33 146.0 188 48.9
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 4.0e-33 146.0 211 53.6
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 4.0e-33 146.0 214 43.9
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 5.2e-33 145.6 200 45.5
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 6.8e-33 145.2 214 43.5
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 2.6e-32 143.3 209 46.4
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 2.6e-32 143.3 200 44.5
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 4.4e-32 142.5 161 53.4
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 4.4e-32 142.5 193 47.7
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 5.7e-32 142.1 188 50.0
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 5.7e-32 142.1 193 59.6
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 5.7e-32 142.1 222 42.8
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 7.5e-32 141.7 195 44.6
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 7.5e-32 141.7 222 42.3
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 9.8e-32 141.4 205 45.9
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 9.8e-32 141.4 193 47.2
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 1.7e-31 140.6 217 45.6
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 2.8e-31 139.8 165 57.6
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 3.7e-31 139.4 179 49.2
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 3.7e-31 139.4 176 49.4
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 4.9e-31 139.0 235 41.3
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 1.4e-30 137.5 225 44.4
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 4.1e-30 136.0 185 47.6
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 5.4e-30 135.6 188 46.3
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 7.0e-30 135.2 193 44.6
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 1.2e-29 134.4 195 44.6
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 1.6e-29 134.0 187 44.9
AL6G14310 Arabidopsis lyrata HOM05D000097 ORTHO05D005676 2.0e-29 133.7 162 60.5
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 3.5e-29 132.9 213 40.8
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 4.5e-29 132.5 219 40.6
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 5.9e-29 132.1 186 48.4
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 7.8e-29 131.7 188 45.7
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 1.3e-28 131.0 196 44.9
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 1.3e-28 131.0 193 46.1
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 2.9e-28 129.8 187 48.7
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 5.0e-28 129.0 203 44.3
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 6.6e-28 128.6 231 42.4
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 1.1e-27 127.9 149 53.0
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 1.1e-27 127.9 183 48.6
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 1.5e-27 127.5 229 38.9
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 1.9e-27 127.1 217 39.6
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 1.9e-27 127.1 187 44.9
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 2.5e-27 126.7 194 40.7
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 2.5e-27 126.7 202 41.6
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 4.3e-27 125.9 218 39.4
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 1.6e-26 124.0 201 40.8
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 2.8e-26 123.2 217 36.9
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 2.8e-26 123.2 218 40.8
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 1.4e-25 120.9 203 43.3
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 1.8e-25 120.6 217 38.2
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 1.8e-25 120.6 188 43.1
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 2.3e-25 120.2 160 47.5
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 2.0e-24 117.1 187 44.4
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 2.6e-24 116.7 142 52.1
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 3.4e-24 116.3 193 45.6
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 5.8e-24 115.5 152 50.7
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 7.5e-24 115.2 119 59.7
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 1.3e-23 114.4 189 43.9
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 2.2e-23 113.6 196 53.1
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 2.9e-23 113.2 190 42.1
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 8.3e-23 111.7 197 42.6
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 5.4e-22 109.0 179 49.2
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 1.0e-20 104.8 142 49.3
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 1.4e-17 94.4 75 74.7
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 9.8e-16 88.2 148 45.3
CARHR196680 Cardamine hirsuta HOM05D004935 ORTHO05D005676 1.4e-14 84.3 61 80.3
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 5.4e-14 82.4 132 41.7
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 5.4e-14 82.4 194 34.0
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 7.8e-13 78.6 115 43.5
CARHR196670 Cardamine hirsuta HOM05D004935 ORTHO05D005676 1.3e-12 77.8 50 78.0
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 8.6e-12 75.1 272 32.7
FAN19G0113 Fragaria x ananassa HOM05D004935 ORTHO05D005676 1.1e-11 74.7 80 50.0
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 7.3e-11 72.0 166 30.1
Cpa.g.sc178.1 Carica papaya HOM05D004935 ORTHO05D005676 1.2e-10 71.2 91 46.2
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 6.2e-10 68.9 89 48.3
MSTRG.15645 Avicennia marina HOM05D004935 ORTHO05D005676 6.8e-09 65.5 99 41.4
DCAR_003417 Daucus carota HOM05D004935 ORTHO05D005676 1.7e-07 60.8 103 38.8
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 2.2e-07 60.5 110 38.2
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 2.2e-07 60.5 102 38.2
Peaxi162Scf00085g00527 Petunia axillaris HOM05D004935 ORTHO05D005676 3.7e-07 59.7 92 41.3
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 1.1e-06 58.2 81 49.4
Pp3c6_9570 Physcomitrium patens HOM05D004935 ORTHO05D005676 9.2e-06 55.1 201 25.4


User provided reference genes

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