Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 4.6e-59 231.1 124 100.0
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 2.0e-46 189.1 124 79.8
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 5.0e-45 184.5 124 76.6
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 9.4e-44 180.3 129 73.6
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 9.4e-44 180.3 129 73.6
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 1.6e-43 179.5 129 73.6
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 2.1e-43 179.1 124 75.8
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 6.7e-42 174.1 129 72.1
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.1e-41 173.3 124 74.2
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 3.6e-35 151.8 115 70.4
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 3.0e-34 148.7 124 66.1
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 8.2e-32 140.6 126 62.7
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 2.9e-29 132.1 125 56.8
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 1.1e-28 130.2 127 57.5
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 4.2e-28 128.3 122 56.6
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 7.2e-28 127.5 119 55.5
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 7.2e-28 127.5 128 56.2
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 1.6e-27 126.3 122 54.9
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 1.6e-27 126.3 122 54.9
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 1.6e-27 126.3 122 54.1
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 2.1e-27 125.9 123 56.1
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 2.1e-27 125.9 128 55.5
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 2.7e-27 125.6 122 54.9
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 3.6e-27 125.2 122 54.1
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 3.6e-27 125.2 127 55.9
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 1.0e-26 123.6 122 55.7
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 1.0e-26 123.6 129 53.5
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 3.0e-26 122.1 120 55.0
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 3.0e-26 122.1 122 53.3
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 3.0e-26 122.1 122 53.3
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 4.0e-26 121.7 123 53.7
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 1.6e-22 109.8 125 47.2
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 2.7e-22 109.0 124 48.4
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 7.7e-22 107.5 100 52.0
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 7.7e-22 107.5 125 49.6
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 2.9e-21 105.5 130 46.9
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 2.9e-21 105.5 129 44.2
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 3.8e-21 105.1 128 46.1
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 1.5e-20 103.2 96 52.1
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.9e-20 102.8 125 46.4
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 3.2e-20 102.1 123 44.7
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 4.2e-20 101.7 102 50.0
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 4.2e-20 101.7 118 44.9
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 2.1e-19 99.4 87 52.9
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 3.6e-19 98.6 85 54.1
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 4.7e-19 98.2 126 42.9
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 6.1e-19 97.8 126 42.9
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 6.1e-19 97.8 126 42.9
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 6.1e-19 97.8 106 45.3
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 6.1e-19 97.8 122 42.6
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.0e-18 97.1 128 43.8
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 6.8e-18 94.4 135 42.2
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 8.8e-18 94.0 126 43.7
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 1.5e-17 93.2 102 46.1
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 3.4e-17 92.0 94 46.8
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.4e-17 92.0 93 46.2
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 5.7e-17 91.3 128 43.8
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 7.5e-17 90.9 131 42.7
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 9.8e-17 90.5 123 42.3
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 9.8e-17 90.5 93 45.2
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 9.8e-17 90.5 95 44.2
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 9.8e-17 90.5 114 45.6
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.3e-16 90.1 93 45.2
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.3e-16 90.1 93 45.2
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.7e-16 89.7 122 45.9
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 1.7e-16 89.7 83 53.0
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 2.2e-16 89.4 83 51.8
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 2.2e-16 89.4 120 42.5
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.8e-16 89.0 121 43.0
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 3.7e-16 88.6 93 45.2
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.7e-16 88.6 125 41.6
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 3.7e-16 88.6 122 41.8
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 4.8e-16 88.2 115 44.3
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 6.3e-16 87.8 124 43.5
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 6.3e-16 87.8 127 42.5
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 8.3e-16 87.4 79 53.2
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 8.3e-16 87.4 127 42.5
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 1.1e-15 87.0 86 53.5
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.1e-15 87.0 86 50.0
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 1.8e-15 86.3 101 47.5
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.8e-15 86.3 119 42.9
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 2.4e-15 85.9 140 39.3
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 2.4e-15 85.9 127 37.0
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 2.4e-15 85.9 82 53.7
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 3.1e-15 85.5 126 41.3
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 3.1e-15 85.5 122 43.4
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 4.1e-15 85.1 105 45.7
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 4.1e-15 85.1 126 42.1
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 4.1e-15 85.1 113 42.5
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 5.4e-15 84.7 83 53.0
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 5.4e-15 84.7 124 41.9
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 7.0e-15 84.3 121 40.5
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 9.1e-15 84.0 118 40.7
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 1.2e-14 83.6 83 49.4
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 1.6e-14 83.2 128 38.3
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 1.6e-14 83.2 85 50.6
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.0e-14 82.8 124 43.5
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 2.0e-14 82.8 92 46.7
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 2.0e-14 82.8 110 40.9
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 2.0e-14 82.8 83 47.0
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 2.0e-14 82.8 126 38.1
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 2.0e-14 82.8 111 45.0
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 2.0e-14 82.8 118 40.7
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.7e-14 82.4 89 43.8
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.7e-14 82.4 89 43.8
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.7e-14 82.4 89 43.8
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.7e-14 82.4 89 43.8
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 2.7e-14 82.4 91 47.3
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 3.5e-14 82.0 128 39.8
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 3.5e-14 82.0 127 40.2
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 7.7e-14 80.9 129 43.4
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 7.7e-14 80.9 133 40.6
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 7.7e-14 80.9 93 43.0
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 7.7e-14 80.9 83 51.8
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 7.7e-14 80.9 83 51.8
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 7.7e-14 80.9 90 50.0
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.3e-13 80.1 109 44.0
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 1.3e-13 80.1 115 41.7
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 1.3e-13 80.1 94 46.8
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 1.3e-13 80.1 117 39.3
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.3e-13 80.1 79 53.2
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.3e-13 80.1 125 40.8
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 2.2e-13 79.3 84 47.6
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 2.2e-13 79.3 79 48.1
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.9e-13 79.0 79 50.6
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 3.8e-13 78.6 129 41.1
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 3.8e-13 78.6 112 41.1
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 5.0e-13 78.2 82 47.6
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 5.0e-13 78.2 128 39.1
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 8.5e-13 77.4 83 50.6
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 8.5e-13 77.4 100 43.0
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 8.5e-13 77.4 121 39.7
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 1.1e-12 77.0 80 48.8
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 1.1e-12 77.0 108 40.7
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.1e-12 77.0 123 40.7
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 1.1e-12 77.0 116 41.4
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 1.9e-12 76.3 126 38.9
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 1.9e-12 76.3 88 43.2
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 3.2e-12 75.5 89 46.1
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 5.5e-12 74.7 83 48.2
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 5.5e-12 74.7 79 53.2
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 7.2e-12 74.3 79 53.2
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 9.4e-12 73.9 79 53.2
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 9.4e-12 73.9 89 43.8
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.2e-11 73.6 78 48.7
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.2e-11 73.6 123 33.3
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.6e-11 73.2 101 41.6
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.6e-11 73.2 84 50.0
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.6e-11 73.2 97 42.3
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.1e-11 72.8 90 42.2
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 2.7e-11 72.4 83 45.8
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 2.7e-11 72.4 88 43.2
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 2.7e-11 72.4 120 35.0
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 3.6e-11 72.0 81 48.1
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 3.6e-11 72.0 99 47.5
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 3.6e-11 72.0 89 42.7
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.7e-11 71.6 79 41.8
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.0e-10 70.5 114 43.0
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 1.4e-10 70.1 98 36.7
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 1.4e-10 70.1 114 43.0
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.4e-10 70.1 82 52.4
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 1.8e-10 69.7 85 43.5
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.3e-10 69.3 80 40.0
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.0e-10 68.9 98 48.0
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 3.0e-10 68.9 82 41.5
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 8.8e-10 67.4 67 47.8
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 8.8e-10 67.4 110 40.9
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 1.2e-09 67.0 98 39.8
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.2e-09 67.0 80 51.2
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 1.2e-09 67.0 83 43.4
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.5e-09 66.6 83 42.2
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 2.6e-09 65.9 83 43.4
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 5.7e-09 64.7 79 40.5
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 9.8e-09 63.9 89 41.6
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 2.2e-08 62.8 99 35.4
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 2.8e-08 62.4 83 39.8
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 4.9e-08 61.6 85 44.7
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 6.3e-08 61.2 88 47.7
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 6.3e-08 61.2 80 33.8
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.4e-07 59.3 94 40.4
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 4.1e-07 58.5 91 35.2
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 5.4e-07 58.2 39 59.0
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 9.2e-07 57.4 84 40.5
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 2.7e-06 55.8 83 38.6


User provided reference genes

Program Settings