Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 5.9e-164 580.9 310 100.0
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 1.6e-145 519.6 300 92.0
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 1.1e-141 506.9 312 89.4
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 1.0e-139 500.4 314 87.9
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 1.0e-139 500.4 314 87.9
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 2.3e-139 499.2 319 87.1
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 5.2e-136 488.0 310 85.5
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 5.8e-135 484.6 314 84.4
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 1.7e-131 473.0 310 82.3
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 4.9e-126 454.9 267 87.6
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 3.1e-120 435.6 279 83.2
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 1.3e-115 420.2 310 71.0
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 3.9e-115 418.7 275 76.4
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 3.3e-114 415.6 278 75.9
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 3.3e-114 415.6 298 76.5
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 5.6e-114 414.8 278 75.9
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 3.7e-113 412.1 235 94.0
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 1.8e-112 409.8 284 74.6
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 2.6e-111 406.0 271 76.0
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 5.8e-111 404.8 289 70.9
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 7.6e-111 404.4 294 75.9
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 1.3e-110 403.7 268 81.0
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 8.4e-110 401.0 279 75.3
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 9.3e-109 397.5 310 68.7
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 2.3e-107 392.9 274 78.8
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 2.3e-107 392.9 278 77.3
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 2.3e-107 392.9 278 77.3
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 2.3e-107 392.9 268 74.3
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 3.0e-107 392.5 269 75.1
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 1.1e-106 390.6 278 77.0
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 7.4e-106 387.9 314 67.2
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 7.4e-106 387.9 309 64.7
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 2.2e-105 386.3 269 74.7
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 2.2e-105 386.3 298 72.8
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 2.8e-105 386.0 307 66.1
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 4.8e-105 385.2 271 72.3
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 6.3e-105 384.8 307 65.5
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 8.2e-105 384.4 271 70.8
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 8.2e-105 384.4 271 70.5
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 1.1e-104 384.0 271 71.2
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 1.8e-104 383.3 275 70.5
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 1.8e-104 383.3 298 72.8
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 1.8e-104 383.3 271 70.1
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 6.9e-104 381.3 271 71.2
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 9.0e-104 380.9 264 73.5
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 1.5e-103 380.2 267 72.3
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 2.0e-103 379.8 297 67.3
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 1.0e-102 377.5 268 71.3
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 1.0e-102 377.5 275 71.6
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 5.0e-102 375.2 271 70.5
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 5.0e-102 375.2 270 76.7
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 5.0e-102 375.2 271 72.3
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 6.5e-102 374.8 323 66.9
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 1.1e-101 374.0 275 70.2
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 1.4e-101 373.6 288 72.6
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 2.5e-101 372.9 270 70.0
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 3.2e-101 372.5 308 68.5
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 7.2e-101 371.3 278 66.9
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 7.2e-101 371.3 270 71.5
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 7.2e-101 371.3 287 67.9
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 7.2e-101 371.3 268 70.5
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.2e-100 370.5 293 66.9
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 1.2e-100 370.5 290 66.9
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.6e-100 370.2 269 75.5
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 2.7e-100 369.4 271 70.1
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 3.6e-100 369.0 268 72.0
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 3.6e-100 369.0 235 79.1
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 6.1e-100 368.2 268 70.5
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 1.8e-99 366.7 270 75.2
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 1.8e-99 366.7 275 73.1
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 2.3e-99 366.3 269 70.3
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 3.0e-99 365.9 270 69.3
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 5.1e-99 365.2 269 70.6
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 6.7e-99 364.8 275 69.5
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 4.3e-98 362.1 275 72.7
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 9.7e-98 360.9 270 71.1
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 1.3e-97 360.5 278 65.8
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 1.7e-97 360.1 299 63.2
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.8e-97 359.4 279 70.6
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 3.7e-97 359.0 305 63.0
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 6.3e-97 358.2 245 72.2
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 1.4e-96 357.1 270 67.4
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 3.1e-96 355.9 271 69.0
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 5.3e-96 355.1 281 66.5
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 6.9e-96 354.8 270 69.3
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 1.2e-95 354.0 293 64.8
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 5.9e-95 351.7 286 64.7
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 3.8e-94 349.0 304 61.2
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 1.4e-93 347.1 271 67.5
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 1.9e-93 346.7 271 67.5
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 1.2e-92 344.0 270 67.4
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 7.9e-92 341.3 271 67.2
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 1.0e-91 340.9 269 66.9
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 6.3e-89 331.6 276 65.6
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 1.8e-88 330.1 272 66.2
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 5.9e-87 325.1 271 66.4
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 1.1e-85 320.9 268 63.8
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 4.4e-82 308.9 270 66.7
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 5.7e-82 308.5 212 72.6
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 3.1e-80 302.8 271 59.8
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 7.7e-79 298.1 260 60.8
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 8.5e-78 294.7 226 67.7
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 2.7e-76 289.7 310 51.9
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 9.1e-72 274.6 260 56.2
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 2.5e-69 266.5 240 58.3
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 7.2e-69 265.0 299 52.2
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 2.8e-65 253.1 186 71.5
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 3.7e-65 252.7 170 72.9
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 2.4e-64 250.0 172 73.3
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 1.1e-61 241.1 229 55.0
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 5.4e-56 222.2 233 54.1
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 5.9e-55 218.8 271 45.4
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 1.3e-54 217.6 198 58.6
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 8.9e-43 178.3 134 69.4
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 9.2e-40 168.3 185 53.5
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.2e-39 167.9 267 46.4
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 5.6e-29 132.5 81 92.6
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 1.5e-26 124.4 85 76.5
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 2.0e-26 124.0 127 61.4
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 1.7e-25 120.9 117 56.4
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 3.8e-25 119.8 127 60.6
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 1.8e-11 74.3 66 62.1
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 1.5e-10 71.2 75 57.3


User provided reference genes

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