Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 5.4e-237 823.9 413 100.0
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 6.0e-204 714.1 414 86.7
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 3.9e-203 711.4 411 85.6
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 2.0e-199 699.1 411 84.7
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 2.6e-199 698.7 411 84.7
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 1.7e-198 696.0 420 84.0
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 2.1e-196 689.1 408 85.5
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 2.7e-196 688.7 411 83.2
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 2.7e-196 688.7 411 83.2
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 5.1e-195 684.5 417 83.0
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 7.3e-194 680.6 407 84.8
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 2.1e-193 679.1 422 81.8
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 1.2e-191 673.3 407 84.0
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 1.2e-191 673.3 407 84.0
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 8.7e-187 657.1 404 83.2
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 4.3e-186 654.8 375 87.2
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 1.3e-182 643.3 386 83.7
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 3.2e-173 612.1 411 73.7
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 2.6e-167 592.4 414 71.7
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 1.8e-147 526.6 408 66.2
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 4.8e-145 518.5 352 71.9
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 2.7e-143 512.7 353 70.8
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 6.5e-142 508.1 349 70.2
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 8.5e-142 507.7 350 69.1
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 1.1e-141 507.3 343 71.4
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 1.5e-141 506.9 348 70.4
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 4.2e-141 505.4 346 69.7
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 9.4e-141 504.2 349 69.9
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.1e-140 503.1 349 69.3
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 3.6e-140 502.3 343 71.1
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 4.7e-140 501.9 348 68.1
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 6.1e-140 501.5 337 71.8
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 6.1e-140 501.5 351 69.2
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 1.0e-139 500.7 352 68.2
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 1.4e-139 500.4 343 70.0
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.3e-139 499.6 348 69.5
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 3.0e-139 499.2 346 70.8
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 3.0e-139 499.2 350 69.4
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 5.2e-139 498.4 346 70.5
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 2.6e-138 496.1 345 70.1
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 5.7e-138 495.0 349 67.9
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 5.7e-138 495.0 346 69.1
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 9.8e-138 494.2 350 68.0
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 9.8e-138 494.2 352 69.6
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 2.2e-137 493.0 353 69.1
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 2.8e-137 492.7 350 67.4
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 6.3e-137 491.5 338 71.6
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 8.3e-137 491.1 351 69.2
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 2.4e-136 489.6 325 74.2
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 4.1e-136 488.8 325 74.2
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 4.1e-136 488.8 325 74.2
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 4.1e-136 488.8 346 68.2
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 7.0e-136 488.0 371 65.5
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 9.1e-136 487.6 345 68.4
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 1.6e-135 486.9 345 68.4
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 2.0e-135 486.5 344 67.2
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 2.7e-135 486.1 345 68.1
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 2.7e-135 486.1 337 68.0
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 5.9e-135 485.0 350 67.4
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.0e-134 484.2 319 72.7
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 1.3e-134 483.8 365 65.8
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 1.1e-133 480.7 350 66.6
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 1.1e-133 480.7 381 63.3
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 5.5e-133 478.4 344 66.6
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 1.6e-132 476.9 344 66.3
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 2.1e-132 476.5 344 66.6
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 2.7e-132 476.1 342 68.1
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 2.7e-132 476.1 344 65.4
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 4.7e-132 475.3 344 65.1
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 4.7e-132 475.3 344 65.1
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 8.0e-132 474.6 344 67.7
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.0e-131 474.2 344 64.2
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.4e-131 473.8 341 67.4
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.4e-131 473.8 344 64.5
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 5.2e-131 471.9 319 70.8
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 1.5e-130 470.3 399 58.9
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 1.5e-130 470.3 344 64.5
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 2.6e-130 469.5 263 87.1
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 9.8e-130 467.6 400 59.0
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 2.8e-129 466.1 349 66.2
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 1.4e-128 463.8 314 70.1
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 1.4e-128 463.8 355 63.4
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 1.8e-128 463.4 324 67.9
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 5.4e-128 461.8 358 62.8
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.3e-126 457.2 346 64.2
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 3.8e-126 455.7 354 63.6
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 8.6e-126 454.5 344 62.8
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 1.5e-125 453.8 351 63.2
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 8.0e-124 448.0 346 62.4
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 1.0e-123 447.6 311 71.1
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 1.4e-123 447.2 318 66.7
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 6.8e-123 444.9 341 61.9
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 3.4e-122 442.6 335 62.7
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 3.7e-121 439.1 342 62.0
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 1.4e-120 437.2 354 63.8
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 1.6e-119 433.7 350 60.6
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 3.1e-115 419.5 343 58.9
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 4.0e-115 419.1 425 52.2
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 1.7e-113 413.7 308 66.6
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 1.1e-112 411.0 331 61.6
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 3.2e-112 409.5 291 70.8
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 9.2e-112 407.9 268 72.4
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 1.7e-110 403.7 282 70.2
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 3.0e-110 402.9 354 59.0
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 8.6e-110 401.4 268 71.6
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 1.5e-106 390.6 316 59.8
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 9.8e-106 387.9 312 59.0
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 1.7e-105 387.1 311 62.4
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 3.7e-105 386.0 293 67.6
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 4.3e-101 372.5 298 61.4
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 2.8e-100 369.8 568 40.3
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 4.0e-99 365.9 348 52.9
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 8.6e-94 348.2 316 53.5
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 2.8e-92 343.2 360 49.2
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 3.6e-92 342.8 344 54.7
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 7.6e-90 335.1 316 52.8
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.7e-89 334.0 320 51.9
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 3.9e-86 322.8 238 73.5
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 3.9e-86 322.8 228 68.9
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 6.0e-79 298.9 224 65.2
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 3.3e-77 293.1 216 62.5
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 2.1e-76 290.4 220 58.2
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 2.8e-76 290.0 267 54.7
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 5.6e-69 265.8 171 69.0
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 1.3e-68 264.6 205 65.9
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 6.2e-68 262.3 202 66.8
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 8.1e-68 261.9 239 58.2
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 2.0e-66 257.3 277 55.6
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 4.8e-60 236.1 243 50.2
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 6.3e-60 235.7 119 89.9
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.1e-53 214.9 224 53.1
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 5.9e-42 176.0 352 33.0
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.1e-37 161.8 149 51.0
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 9.7e-37 158.7 310 31.0
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 2.2e-36 157.5 93 75.3
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 2.1e-31 141.0 336 30.4
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 1.8e-30 137.9 84 72.6
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 1.9e-24 117.9 98 50.0
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 1.7e-17 94.7 89 48.3
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 1.7e-17 94.7 81 69.1
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 4.4e-13 80.1 80 52.5
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 9.8e-13 79.0 188 28.2


User provided reference genes

Program Settings