Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g26410 Schrenkiella parvula HOM05D005516 ORTHO05D006713 4.5e-75 284.6 158 100.0
Thhalv10014907m.g Eutrema salsugineum HOM05D005516 ORTHO05D006713 2.7e-64 248.8 158 89.9
AL6G28930 Arabidopsis lyrata HOM05D005516 ORTHO05D006713 9.7e-62 240.4 158 85.4
BcaB01g04919 Brassica carinata HOM05D005516 ORTHO05D006713 5.3e-60 234.6 161 83.9
BraA03t10176Z Brassica rapa HOM05D005516 ORTHO05D006713 4.5e-59 231.5 159 84.9
BcaB01g05159 Brassica carinata HOM05D005516 ORTHO05D006713 1.0e-58 230.3 159 84.3
C03p09930 Brassica napus HOM05D005516 ORTHO05D006713 1.0e-58 230.3 159 84.3
BolC3t13481H Brassica oleracea HOM05D005516 ORTHO05D006713 1.0e-58 230.3 159 84.3
AT5G17840 Arabidopsis thaliana HOM05D005516 ORTHO05D006713 3.8e-58 228.4 158 84.8
Carub.0006s1607 Capsella rubella HOM05D005516 ORTHO05D006713 2.1e-56 222.6 158 83.5
Aa31LG11G11740 Aethionema arabicum HOM05D005516 ORTHO05D006713 5.2e-55 218.0 158 74.7
A03p08520 Brassica napus HOM05D005516 ORTHO05D006713 3.3e-54 215.3 160 81.9
CARHR195330 Cardamine hirsuta HOM05D005516 ORTHO05D006713 1.7e-53 213.0 158 81.6
THA.LOC104820795 Tarenaya hassleriana HOM05D005516 ORTHO05D006713 1.7e-50 203.0 158 72.2
C02p25840 Brassica napus HOM05D005516 ORTHO05D006713 2.1e-48 196.1 163 77.9
BcaB05g23282 Brassica carinata HOM05D005516 ORTHO05D006713 1.0e-34 150.6 128 67.2
Duzib106G1703 Durio zibethinus HOM05D005516 ORTHO05D006713 1.0e-34 150.6 165 53.9
Thecc.05G241500 Theobroma cacao HOM05D005516 ORTHO05D006713 4.3e-33 145.2 161 58.4
Cfa017721 Carpinus fangiana HOM05D005516 ORTHO05D006713 9.5e-33 144.1 112 75.0
COL.COLO4_20092 Corchorus olitorius HOM05D005516 ORTHO05D006713 9.5e-33 144.1 101 73.3
Ca_08316_v3 Cicer arietinum L. HOM05D005516 ORTHO05D006713 1.2e-32 143.7 114 71.9
Psat3g086560 Pisum sativum HOM05D005516 ORTHO05D006713 1.2e-32 143.7 146 63.7
BcaC03g15036 Brassica carinata HOM05D005516 ORTHO05D006713 3.6e-32 142.1 113 71.7
BolC2t08658H Brassica oleracea HOM05D005516 ORTHO05D006713 3.6e-32 142.1 113 71.7
Hma1.2p1_0526F.1_g172910 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 3.6e-32 142.1 119 68.1
arahy.Tifrunner.gnm1.ann1.BMR428 Arachis hypogaea HOM05D005516 ORTHO05D006713 6.1e-32 141.4 105 71.4
PSO339G3932 Papaver somniferum HOM05D005516 ORTHO05D006713 6.1e-32 141.4 100 73.0
Hma1.2p1_0526F.1_g172920 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 8.0e-32 141.0 90 73.3
Lalb_Chr14g0364851 Lupinus albus HOM05D005516 ORTHO05D006713 8.0e-32 141.0 114 68.4
GSVIVG01029962001 Vitis vinifera HOM05D005516 ORTHO05D006713 1.0e-31 140.6 114 73.7
Glyma.16G035800 Glycine max HOM05D005516 ORTHO05D006713 1.4e-31 140.2 115 63.5
Gorai.013G196100 Gossypium raimondii HOM05D005516 ORTHO05D006713 1.8e-31 139.8 90 72.2
CiPaw.09G166400 Carya illinoinensis HOM05D005516 ORTHO05D006713 2.3e-31 139.4 146 54.8
PSO384G4582 Papaver somniferum HOM05D005516 ORTHO05D006713 2.3e-31 139.4 128 62.5
Duzib128G1828 Durio zibethinus HOM05D005516 ORTHO05D006713 5.2e-31 138.3 136 55.9
CSS0039228 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 8.9e-31 137.5 81 75.3
ECA248G2342 Erigeron canadensis HOM05D005516 ORTHO05D006713 8.9e-31 137.5 115 74.8
DCAR_016961 Daucus carota HOM05D005516 ORTHO05D006713 1.2e-30 137.1 121 57.0
Haze_20402 Corylus avellana HOM05D005516 ORTHO05D006713 1.5e-30 136.7 114 72.8
Dinv13791 Davidia involucrata HOM05D005516 ORTHO05D006713 1.5e-30 136.7 95 68.4
Ciclev10022543m.g Citrus clementina HOM05D005516 ORTHO05D006713 2.6e-30 136.0 171 56.1
Lj1g0004780 Lotus japonicus HOM05D005516 ORTHO05D006713 2.6e-30 136.0 130 65.4
TPR.G34794 Trifolium pratense HOM05D005516 ORTHO05D006713 2.6e-30 136.0 82 76.8
TWI32G0326 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 2.6e-30 136.0 160 60.0
Atru.chr2.1522 Acer truncatum HOM05D005516 ORTHO05D006713 3.4e-30 135.6 106 77.4
VMungo1383G1686 Vigna mungo HOM05D005516 ORTHO05D006713 3.4e-30 135.6 114 71.1
CSS0003853 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 4.4e-30 135.2 80 75.0
TWI60G0181 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 4.4e-30 135.2 122 69.7
MSTRG.6254 Avicennia marina HOM05D005516 ORTHO05D006713 5.7e-30 134.8 133 53.4
Manes.08G152800 Manihot esculenta HOM05D005516 ORTHO05D006713 5.7e-30 134.8 168 56.0
Duzib177G0157 Durio zibethinus HOM05D005516 ORTHO05D006713 7.5e-30 134.4 107 64.5
MBI05_g16554_MAGBIO Magnolia biondii HOM05D005516 ORTHO05D006713 7.5e-30 134.4 117 70.1
Phvul.001G105600 Phaseolus vulgaris HOM05D005516 ORTHO05D006713 7.5e-30 134.4 114 71.1
Potri.019G040400 Populus trichocarpa HOM05D005516 ORTHO05D006713 7.5e-30 134.4 117 59.8
vmacro08774 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.3e-29 133.7 98 68.4
Peaxi162Scf00575g00619 Petunia axillaris HOM05D005516 ORTHO05D006713 1.7e-29 133.3 81 74.1
Rhsim08G0097500 Rhododendron simsii HOM05D005516 ORTHO05D006713 1.7e-29 133.3 81 76.5
SGA_v2.0_scaffold66G22373 Striga asiatica HOM05D005516 ORTHO05D006713 2.9e-29 132.5 121 55.4
Glyma.19G117300 Glycine max HOM05D005516 ORTHO05D006713 3.7e-29 132.1 114 71.1
Sc07g0007460 Simmondsia chinensis HOM05D005516 ORTHO05D006713 3.7e-29 132.1 111 64.0
Sopen10g031880 Solanum pennellii HOM05D005516 ORTHO05D006713 3.7e-29 132.1 100 71.0
Hund20711 Selenicereus undatus HOM05D005516 ORTHO05D006713 4.9e-29 131.7 126 54.8
ClCG04G004680 Citrullus lanatus HOM05D005516 ORTHO05D006713 6.4e-29 131.3 80 75.0
Sabra13G0057700 Salix brachista HOM05D005516 ORTHO05D006713 8.3e-29 131.0 80 76.2
PGSC0003DMG400028211 Solanum tuberosum HOM05D005516 ORTHO05D006713 8.3e-29 131.0 100 70.0
arahy.Tifrunner.gnm1.ann1.253MNK Arachis hypogaea HOM05D005516 ORTHO05D006713 1.1e-28 130.6 105 73.3
MELO3C008865.2 Cucumis melo HOM05D005516 ORTHO05D006713 1.1e-28 130.6 100 76.0
CsaV3_4G031610 Cucumis sativus L. HOM05D005516 ORTHO05D006713 1.1e-28 130.6 115 69.6
HanXRQChr13g0406451 Helianthus annuus HOM05D005516 ORTHO05D006713 1.1e-28 130.6 88 70.5
CANSAT78G1214 Cannabis sativa HOM05D005516 ORTHO05D006713 1.8e-28 129.8 96 72.9
FAN26G2397 Fragaria x ananassa HOM05D005516 ORTHO05D006713 2.4e-28 129.4 127 62.2
Solyc10g081380.2 Solanum lycopersicum HOM05D005516 ORTHO05D006713 2.4e-28 129.4 100 72.0
FAN23G0165 Fragaria x ananassa HOM05D005516 ORTHO05D006713 3.2e-28 129.0 127 61.4
QL07p017420 Quercus lobata HOM05D005516 ORTHO05D006713 3.2e-28 129.0 97 63.9
SGA_v2.0_scaffold69G23215 Striga asiatica HOM05D000039 ORTHO05D000370 3.2e-28 129.0 77 76.6
CSS0031486 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 4.1e-28 128.6 89 68.5
Hma1.2p1_0106F.1_g051205 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 4.1e-28 128.6 81 70.4
Nitab4.5_0000613g0140 Nicotiana tabacum HOM05D005516 ORTHO05D006713 4.1e-28 128.6 80 73.8
RcHm_v2.0_Chr3g0496031 Rosa chinensis HOM05D005516 ORTHO05D006713 4.1e-28 128.6 117 67.5
FvH4_1g29880 Fragaria vesca HOM05D005516 ORTHO05D006713 5.4e-28 128.3 127 61.4
FAN19G1175 Fragaria x ananassa HOM05D005516 ORTHO05D006713 5.4e-28 128.3 105 58.1
Sed0005064 Sechium edule HOM05D005516 ORTHO05D006713 5.4e-28 128.3 100 75.0
HPP92_000977 Vanilla planifolia HOM05D005516 ORTHO05D006713 5.4e-28 128.3 154 55.2
Gorai.004G252300 Gossypium raimondii HOM05D005516 ORTHO05D006713 7.0e-28 127.9 162 51.2
Lsat_1_v5_gn_5_154420 Lactuca sativa HOM05D005516 ORTHO05D006713 7.0e-28 127.9 90 68.9
Cc06_g21500 Coffea canephora HOM05D005516 ORTHO05D006713 9.2e-28 127.5 119 64.7
Potri.013G066000 Populus trichocarpa HOM05D005516 ORTHO05D006713 1.2e-27 127.1 166 54.8
Hund20712 Selenicereus undatus HOM05D005516 ORTHO05D006713 1.2e-27 127.1 122 55.7
vmacro04358 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.2e-27 127.1 129 53.5
HPP92_001001 Vanilla planifolia HOM05D005516 ORTHO05D006713 1.2e-27 127.1 154 54.5
Zm00001eb052720 Zea mays HOM05D005516 ORTHO05D006713 1.2e-27 127.1 115 65.2
Actinidia06205 Actinidia chinensis HOM05D005516 ORTHO05D006713 1.6e-27 126.7 112 70.5
vmacro18891 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.6e-27 126.7 81 74.1
Eucgr.K01534 Eucalyptus grandis HOM05D005516 ORTHO05D006713 2.0e-27 126.3 114 69.3
Medtr7g086700 Medicago truncatula HOM05D005516 ORTHO05D006713 2.7e-27 125.9 96 78.1
CAN.G128.137 Capsicum annuum HOM05D005516 ORTHO05D006713 4.6e-27 125.2 81 70.4
Gohir.A13G161100 Gossypium hirsutum HOM05D005516 ORTHO05D006713 5.9e-27 124.8 143 50.3
Oeu044207.1 Olea europaea HOM05D005516 ORTHO05D006713 5.9e-27 124.8 109 62.4
DCAR_020653 Daucus carota HOM05D005516 ORTHO05D006713 7.8e-27 124.4 117 65.0
Nitab4.5_0000811g0010 Nicotiana tabacum HOM05D005516 ORTHO05D006713 7.8e-27 124.4 98 75.5
MD12G1011900 Malus domestica HOM05D005516 ORTHO05D006713 1.0e-26 124.0 141 59.6
Gohir.A08G219566 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.3e-26 123.6 114 65.8
MD14G1009500 Malus domestica HOM05D005516 ORTHO05D006713 3.9e-26 122.1 141 56.7
Prupe.7G015800 Prunus persica HOM05D005516 ORTHO05D006713 1.9e-25 119.8 114 64.0
MSTRG.26204 Avicennia marina HOM05D005516 ORTHO05D006713 2.5e-25 119.4 128 55.5
unitig_0.g583 Utricularia gibba HOM05D005516 ORTHO05D006713 2.5e-25 119.4 114 54.4
Gohir.D13G166400 Gossypium hirsutum HOM05D005516 ORTHO05D006713 4.3e-25 118.6 143 47.6
Zm00001eb218270 Zea mays HOM05D005516 ORTHO05D006713 7.3e-25 117.9 115 62.6
CDE07G0498 Ceratophyllum demersum HOM05D005516 ORTHO05D006713 9.5e-25 117.5 81 64.2
Nitab4.5_0000404g0040 Nicotiana tabacum HOM05D005516 ORTHO05D006713 2.1e-24 116.3 80 67.5
Cpa.g.sc161.38 Carica papaya HOM05D005516 ORTHO05D006713 2.8e-24 115.9 84 64.3
BolC2t06845H Brassica oleracea HOM05D005516 ORTHO05D006713 2.3e-23 112.8 93 73.1
SEGI_32239 Sequoiadendron giganteum HOM05D005516 ORTHO05D006713 2.3e-23 112.8 77 63.6
EL10Ac3g06621 Beta vulgaris HOM05D005516 ORTHO05D006713 4.0e-23 112.1 112 65.2
Os03g0656201 Oryza sativa ssp. japonica HOM05D005516 ORTHO05D006713 4.0e-23 112.1 141 53.2
Ah.13g074870 Amaranthus hybridus HOM05D005516 ORTHO05D006713 8.9e-23 110.9 82 63.4
AUR62018088 Chenopodium quinoa HOM05D005516 ORTHO05D006713 1.2e-22 110.5 82 61.0
Aqoxy1G00508 Aquilegia oxysepala HOM05D005516 ORTHO05D006713 4.4e-22 108.6 127 51.2
AUR62032011 Chenopodium quinoa HOM05D005516 ORTHO05D006713 5.8e-22 108.2 109 50.5
Pp3c8_890 Physcomitrium patens HOM05D005516 ORTHO05D006713 8.3e-21 104.4 115 54.8
Lalb_Chr24g0401101 Lupinus albus HOM05D005516 ORTHO05D006713 4.6e-19 98.6 84 73.8
SalBow6G3354 Salvia bowleyana HOM05D005516 ORTHO05D006713 1.5e-17 93.6 96 54.2
Mapoly0020s0169 Marchantia polymorpha HOM05D005516 ORTHO05D006713 7.3e-17 91.3 98 57.1
Peaxi162Scf00575g00620 Petunia axillaris HOM05D005516 ORTHO05D006713 1.8e-15 86.7 75 56.0
Gohir.D02G044500 Gossypium hirsutum HOM05D005516 ORTHO05D006713 6.8e-15 84.7 81 59.3
Oeu029775.1 Olea europaea HOM05D005516 ORTHO05D006713 1.2e-14 84.0 56 67.9
Ciclev10013836m.g Citrus clementina HOM05D005516 ORTHO05D006713 2.0e-14 83.2 73 57.5
Sed0000674 Sechium edule HOM05D005516 ORTHO05D006713 3.4e-14 82.4 81 54.3
Actinidia07963 Actinidia chinensis HOM05D005516 ORTHO05D006713 5.8e-14 81.6 70 57.1
Gohir.A06G040900 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.1e-12 77.4 81 61.7
Gohir.D05G109301 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.1e-12 77.4 81 61.7
CBR_g28089 Chara braunii HOM05D005516 ORTHO05D006713 2.7e-11 72.8 64 64.1
TAR633G1766 Trochodendron aralioides HOM05D005516 ORTHO05D006713 3.5e-11 72.4 45 71.1
Nn6g32378 Nelumbo nucifera HOM05D005516 ORTHO05D006713 7.3e-09 64.7 55 61.8
SMO367G1142 Selaginella moellendorffii HOM05D005516 ORTHO05D006713 2.8e-08 62.8 39 69.2


User provided reference genes

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