Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 6.6e-162 573.9 282 100.0
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 1.5e-134 483.0 287 84.7
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 1.2e-131 473.4 282 83.3
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 1.3e-130 469.9 283 83.4
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 1.9e-129 466.1 280 82.1
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 5.3e-127 458.0 278 83.1
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 3.8e-125 451.8 272 82.4
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 1.4e-124 449.9 280 81.8
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 1.0e-122 443.7 282 78.7
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 3.9e-122 441.8 280 79.3
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 5.1e-122 441.4 280 79.3
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 3.7e-120 435.3 280 77.9
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 1.1e-119 433.7 285 80.4
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 3.1e-119 432.2 282 78.4
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 2.0e-118 429.5 288 78.8
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 3.4e-118 428.7 287 78.7
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 3.9e-114 415.2 285 76.5
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 1.5e-113 413.3 285 76.1
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 1.5e-113 413.3 285 76.1
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 1.5e-113 413.3 285 76.1
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 2.2e-104 382.9 287 71.8
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 4.8e-104 381.7 299 70.6
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 1.1e-97 360.5 282 68.1
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 1.7e-80 303.5 290 60.3
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 4.9e-80 302.0 292 59.6
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 1.5e-76 290.4 291 58.1
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 1.9e-76 290.0 290 59.0
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 1.0e-74 284.3 291 55.3
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 2.6e-73 279.6 283 58.3
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 2.9e-72 276.2 287 56.1
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 1.8e-71 273.5 283 57.2
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 1.8e-71 273.5 283 57.2
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 5.4e-71 271.9 285 56.5
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 8.6e-69 264.6 279 57.0
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 1.1e-68 264.2 284 56.0
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 2.8e-67 259.6 309 54.0
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 4.4e-65 252.3 290 53.4
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 4.9e-64 248.8 287 54.4
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 1.1e-50 204.5 290 48.3
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 1.8e-50 203.8 292 49.0
THA.LOC104827275 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 3.7e-48 196.1 271 47.6
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 6.4e-48 195.3 235 49.8
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 4.6e-46 189.1 298 43.0
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 6.8e-42 175.3 306 39.2
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 4.4e-41 172.6 320 39.4
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 4.4e-41 172.6 320 39.4
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 9.3e-39 164.9 309 41.4
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 1.6e-38 164.1 325 40.0
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 3.9e-37 159.5 311 40.5
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 3.3e-36 156.4 300 37.3
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 5.6e-36 155.6 326 39.3
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 4.8e-35 152.5 317 39.4
BcaC03g13578 Brassica carinata HOM05D003715 ORTHO05D003958 1.4e-34 151.0 101 75.2
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 1.8e-34 150.6 308 37.7
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 2.0e-33 147.1 312 36.5
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 4.4e-33 146.0 312 35.9
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 7.6e-33 145.2 296 39.2
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 7.6e-33 145.2 317 38.2
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 1.3e-32 144.4 294 38.4
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 2.2e-32 143.7 294 39.1
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 2.9e-32 143.3 308 36.7
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 2.9e-32 143.3 294 38.1
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 3.8e-32 142.9 317 36.9
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 2.4e-31 140.2 306 37.3
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 3.2e-31 139.8 291 37.1
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 5.4e-31 139.0 302 36.8
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 9.3e-31 138.3 292 35.3
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 9.3e-31 138.3 318 35.5
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 9.3e-31 138.3 297 36.7
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 3.5e-30 136.3 316 36.1
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 7.9e-30 135.2 286 36.4
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 7.9e-30 135.2 290 32.8
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 1.0e-29 134.8 307 37.5
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 2.3e-29 133.7 293 34.8
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 2.3e-29 133.7 316 35.8
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 5.1e-29 132.5 319 33.9
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 5.1e-29 132.5 305 37.7
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 6.6e-29 132.1 292 37.7
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 1.1e-28 131.3 293 35.2
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 1.5e-28 131.0 319 35.7
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.5e-28 131.0 310 37.1
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 3.3e-28 129.8 309 35.0
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 3.3e-28 129.8 316 34.5
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 4.3e-28 129.4 291 36.8
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 7.4e-28 128.6 306 35.0
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 7.4e-28 128.6 295 35.3
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 7.4e-28 128.6 311 35.7
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 9.6e-28 128.3 319 35.7
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 9.6e-28 128.3 333 34.5
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 9.6e-28 128.3 302 33.1
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 1.3e-27 127.9 298 34.2
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 1.3e-27 127.9 311 35.4
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 1.3e-27 127.9 297 36.4
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.6e-27 127.5 292 33.2
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 1.6e-27 127.5 300 34.3
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 2.1e-27 127.1 284 34.2
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 2.1e-27 127.1 308 35.1
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 2.8e-27 126.7 299 35.5
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 3.6e-27 126.3 294 33.3
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 4.8e-27 125.9 279 35.1
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 8.1e-27 125.2 260 38.8
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 8.1e-27 125.2 306 34.0
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 8.1e-27 125.2 301 34.2
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 1.1e-26 124.8 303 33.7
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 1.1e-26 124.8 304 34.9
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 1.1e-26 124.8 314 36.6
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 1.4e-26 124.4 298 35.9
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 1.4e-26 124.4 315 35.6
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.8e-26 124.0 292 33.6
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 2.4e-26 123.6 284 35.2
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.4e-26 123.6 291 36.8
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 9.0e-26 121.7 308 35.4
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 1.2e-25 121.3 315 37.1
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 2.0e-25 120.6 298 37.6
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 3.4e-25 119.8 280 35.0
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 3.4e-25 119.8 324 34.6
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 4.5e-25 119.4 294 33.0
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 5.8e-25 119.0 284 35.2
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 1.3e-24 117.9 317 32.5
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 1.7e-24 117.5 310 33.9
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 2.2e-24 117.1 301 35.9
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 2.2e-24 117.1 294 35.0
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 2.9e-24 116.7 319 32.3
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 3.8e-24 116.3 294 35.0
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 6.4e-24 115.5 309 36.2
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 8.4e-24 115.2 298 34.9
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 8.4e-24 115.2 303 32.3
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 4.2e-23 112.8 300 35.0
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 4.2e-23 112.8 315 35.9
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 7.1e-23 112.1 296 34.5
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 7.1e-23 112.1 307 33.2
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 1.6e-22 110.9 286 32.2
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 4.6e-22 109.4 309 34.3
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 1.0e-21 108.2 322 28.9
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.0e-21 108.2 197 39.1
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 1.0e-21 108.2 247 34.8
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 1.3e-21 107.8 292 34.2
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 2.3e-21 107.1 170 44.1
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 6.7e-21 105.5 180 38.3
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 6.7e-21 105.5 286 31.8
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 7.4e-20 102.1 253 34.4
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 4.8e-19 99.4 179 39.1
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 8.1e-19 98.6 111 48.6
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 8.1e-19 98.6 296 30.7
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 1.8e-18 97.4 296 31.1
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 2.4e-18 97.1 101 57.4
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 6.9e-18 95.5 308 29.2
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 9.0e-18 95.1 311 29.3
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 9.0e-18 95.1 267 34.1
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 5.8e-17 92.4 277 31.0
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.0e-16 91.7 267 31.1
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 1.3e-16 91.3 234 32.5
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 1.7e-16 90.9 288 29.5
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 1.7e-16 90.9 269 30.1
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 2.9e-16 90.1 277 33.2
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 2.9e-16 90.1 257 36.2
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 3.8e-16 89.7 294 30.3
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 1.1e-15 88.2 294 29.3
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 1.1e-15 88.2 293 31.1
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.5e-15 87.0 201 33.3
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 3.2e-15 86.7 183 33.3
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 5.5e-15 85.9 290 28.6
FAN19G0160 Fragaria x ananassa HOM05D003715 ORTHO05D003958 7.1e-15 85.5 269 29.0
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 2.1e-14 84.0 201 34.8
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 2.7e-14 83.6 190 32.6
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 3.5e-14 83.2 293 28.7
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 4.6e-14 82.8 300 29.7
Os07g0204100 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 1.3e-13 81.3 93 49.5
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.8e-13 80.9 282 28.4
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 6.7e-13 79.0 293 27.6
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 6.7e-13 79.0 95 45.3
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 3.3e-12 76.6 161 32.9
Lsat_1_v5_gn_2_58261 Lactuca sativa HOM05D003715 ORTHO05D003958 1.4e-10 71.2 251 31.9
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 1.8e-10 70.9 71 52.1
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 2.4e-10 70.5 102 48.0
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 2.4e-10 70.5 292 25.3
HPP92_014229 Vanilla planifolia HOM05D035551 ORTHO05D003958 2.4e-10 70.5 125 36.8
arahy.Tifrunner.gnm1.ann1.85Z4HY Arachis hypogaea HOM05D003715 ORTHO05D003958 3.1e-10 70.1 283 26.1
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 3.1e-10 70.1 107 40.2
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 5.3e-10 69.3 276 29.7
PSO782G0808 Papaver somniferum HOM05D003715 ORTHO05D003958 2.2e-08 63.9 142 33.1
unitig_0.g211 Utricularia gibba HOM05D003715 ORTHO05D003958 5.0e-08 62.8 280 27.9
Peaxi162Scf00249g00717 Petunia axillaris HOM05D003715 ORTHO05D003958 2.7e-06 57.0 204 31.9


User provided reference genes

Program Settings