Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g25910 Schrenkiella parvula HOM05D002281 ORTHO05D005599 0.0e+00 2515.0 1276 100.0
BolC3t13512H Brassica oleracea HOM05D002281 ORTHO05D005599 0.0e+00 2456.8 1292 96.7
BraA03t10208Z Brassica rapa HOM05D002281 ORTHO05D005599 0.0e+00 2449.1 1295 96.4
AT5G18410 Arabidopsis thaliana HOM05D002281 ORTHO05D005599 0.0e+00 2448.7 1286 96.8
AL6G29660 Arabidopsis lyrata HOM05D002281 ORTHO05D005599 0.0e+00 2447.2 1287 96.8
CARHR194610 Cardamine hirsuta HOM05D002281 ORTHO05D005599 0.0e+00 2446.8 1286 96.8
Thhalv10012457m.g Eutrema salsugineum HOM05D002281 ORTHO05D005599 0.0e+00 2443.3 1287 96.7
Carub.0006s1667 Capsella rubella HOM05D002281 ORTHO05D005599 0.0e+00 2441.8 1286 96.5
C03p10320 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2397.1 1293 95.0
A03p08830 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2396.3 1290 95.1
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 0.0e+00 2367.8 1293 94.0
THA.LOC104820753 Tarenaya hassleriana HOM05D002281 ORTHO05D005599 0.0e+00 2321.2 1286 91.3
Gohir.A13G102900 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2187.1 1287 85.1
Gorai.013G119000 Gossypium raimondii HOM05D002281 ORTHO05D005599 0.0e+00 2185.6 1287 84.8
Gohir.D13G106101 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2182.5 1287 84.7
Thecc.05G264800 Theobroma cacao HOM05D002281 ORTHO05D005599 0.0e+00 2174.1 1288 84.8
Atru.chr2.1138 Acer truncatum HOM05D002281 ORTHO05D005599 0.0e+00 2157.9 1287 83.9
CANSAT54G0020 Cannabis sativa HOM05D002281 ORTHO05D005599 0.0e+00 2152.9 1287 83.3
Cfa006304 Carpinus fangiana HOM05D002281 ORTHO05D005599 0.0e+00 2151.7 1288 83.5
GSVIVG01026355001 Vitis vinifera HOM05D002281 ORTHO05D005599 0.0e+00 2148.6 1299 82.4
Dinv05786 Davidia involucrata HOM05D002281 ORTHO05D005599 0.0e+00 2146.3 1289 83.6
Potri.019G025200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2143.6 1288 83.2
Manes.09G145500 Manihot esculenta HOM05D002281 ORTHO05D005599 0.0e+00 2140.2 1288 82.8
Eucgr.B02169 Eucalyptus grandis HOM05D002281 ORTHO05D005599 0.0e+00 2138.2 1290 83.3
CiPaw.07G076600 Carya illinoinensis HOM05D002281 ORTHO05D005599 0.0e+00 2137.1 1287 83.1
Aa31LG11G11220 Aethionema arabicum HOM05D002281 ORTHO05D005599 0.0e+00 2134.8 1289 86.1
Prupe.6G354800 Prunus persica HOM05D002281 ORTHO05D005599 0.0e+00 2134.0 1287 83.1
CSS0028465 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D005599 0.0e+00 2132.8 1289 82.6
Duzib106G1897 Durio zibethinus HOM05D002281 ORTHO05D005599 0.0e+00 2130.5 1287 83.2
TWI60G0078 Tripterygium wilfordii HOM05D002281 ORTHO05D005599 0.0e+00 2125.5 1287 82.3
Glyma.19G250600 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2120.9 1286 82.5
Phvul.006G107600 Phaseolus vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2120.9 1285 82.6
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2119.0 1287 82.5
Glyma.03G253000 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2118.2 1286 82.4
FvH4_6g01330 Fragaria vesca HOM05D002281 ORTHO05D005599 0.0e+00 2117.8 1286 82.3
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2115.9 1297 81.7
arahy.Tifrunner.gnm1.ann1.KCE1UK Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2114.7 1320 81.1
PGR142G2635 Punica granatum HOM05D002281 ORTHO05D005599 0.0e+00 2114.7 1288 82.8
TAR362G0445 Trochodendron aralioides HOM05D002281 ORTHO05D005599 0.0e+00 2112.0 1288 82.1
Medtr7g116590 Medicago truncatula HOM05D002281 ORTHO05D005599 0.0e+00 2111.3 1288 82.5
Potri.013G051200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2111.3 1288 82.4
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2110.9 1286 82.1
Lj1g0020458 Lotus japonicus HOM05D002281 ORTHO05D005599 0.0e+00 2110.5 1285 81.9
VMungo0540G0745 Vigna mungo HOM05D002281 ORTHO05D005599 0.0e+00 2105.1 1285 81.9
Hma1.2p1_0153F.1_g067890 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 2097.8 1293 81.7
Sabra19G0037800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2097.4 1304 81.2
Sabra19G0034800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2093.2 1304 81.0
Ciclev10023801m.g Citrus clementina HOM05D002281 ORTHO05D005599 0.0e+00 2092.0 1282 82.8
Sed0017844 Sechium edule HOM05D002281 ORTHO05D005599 0.0e+00 2077.8 1298 79.9
Aqoxy5G01434 Aquilegia oxysepala HOM05D002281 ORTHO05D005599 0.0e+00 2076.2 1288 80.8
HanXRQChr04g0111671 Helianthus annuus HOM05D002281 ORTHO05D005599 0.0e+00 2066.2 1298 80.2
ECA233G3880 Erigeron canadensis HOM05D002281 ORTHO05D005599 0.0e+00 2065.0 1286 80.5
Solyc11g013280.1 Solanum lycopersicum HOM05D002281 ORTHO05D005599 0.0e+00 2063.5 1289 80.4
Nn1g03089 Nelumbo nucifera HOM05D002281 ORTHO05D005599 0.0e+00 2063.1 1287 80.0
Sc09g0001770 Simmondsia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 2062.7 1288 80.7
arahy.Tifrunner.gnm1.ann1.T4Q4MP Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2060.8 1288 81.0
COL.COLO4_38179 Corchorus olitorius HOM05D002281 ORTHO05D005599 0.0e+00 2059.6 1288 80.7
Sopen11g008300 Solanum pennellii HOM05D002281 ORTHO05D005599 0.0e+00 2052.7 1289 80.2
Ca_09474_v3 Cicer arietinum L. HOM05D002281 ORTHO05D005599 0.0e+00 2051.6 1307 80.0
Lsat_1_v5_gn_8_2941 Lactuca sativa HOM05D002281 ORTHO05D005599 0.0e+00 2041.2 1288 79.9
PSO674G0074 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2039.6 1287 79.4
SalBow7G0462 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2038.8 1288 78.7
MSTRG.1472 Avicennia marina HOM05D002281 ORTHO05D005599 0.0e+00 2037.3 1289 78.4
Migut.C01166 Erythranthe guttata HOM05D002281 ORTHO05D005599 0.0e+00 2037.3 1288 78.5
PSO170G6144 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2025.8 1287 78.9
SalBow7G2659 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2016.9 1288 78.3
EL10Ac4g09788 Beta vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2013.8 1287 78.5
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2010.7 1286 79.0
Nitab4.5_0000494g0100 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 2005.7 1289 78.7
Haze_04485 Corylus avellana HOM05D002281 ORTHO05D005599 0.0e+00 1999.9 1308 78.4
SGA_v2.0_scaffold52G18996 Striga asiatica HOM05D002281 ORTHO05D005599 0.0e+00 1928.7 1215 78.8
Nitab4.5_0000051g0330 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 1921.0 1416 71.1
Os03g0143800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D005599 0.0e+00 1888.6 1294 73.0
Sabra13G0046600 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1885.2 1551 66.0
Hund07164 Selenicereus undatus HOM05D002281 ORTHO05D005599 0.0e+00 1879.8 1222 77.1
Cc10_g10590 Coffea canephora HOM05D002281 ORTHO05D005599 0.0e+00 1864.4 1174 79.6
Zm00001eb003550 Zea mays HOM05D002281 ORTHO05D005599 0.0e+00 1852.8 1291 71.6
AUR62000642 Chenopodium quinoa HOM05D002281 ORTHO05D005599 0.0e+00 1723.8 1315 69.3
Cpa.g.sc51.37 Carica papaya HOM05D002281 ORTHO05D005599 0.0e+00 1604.7 960 84.4
Psat0s3583g0040 Pisum sativum HOM05D002281 ORTHO05D005599 0.0e+00 1598.6 954 84.6
RcHm_v2.0_Chr3g0448901 Rosa chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1534.6 935 80.6
Rhsim05G0168900 Rhododendron simsii HOM05D002281 ORTHO05D005599 0.0e+00 1516.5 1069 74.1
Pp3c21_8020 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1488.4 1327 57.1
HPP92_013019 Vanilla planifolia HOM05D002281 ORTHO05D005599 0.0e+00 1481.1 1205 63.5
AagrBONN_evm.TU.Sc2ySwM_344.4016 Anthoceros agrestis HOM05D002281 ORTHO05D005599 0.0e+00 1479.5 1292 58.4
Mapoly0078s0045 Marchantia polymorpha HOM05D002281 ORTHO05D005599 0.0e+00 1474.5 1293 58.4
MELO3C015463.2 Cucumis melo HOM05D002281 ORTHO05D005599 0.0e+00 1466.8 939 77.1
SMO348G0052 Selaginella moellendorffii HOM05D002281 ORTHO05D005599 0.0e+00 1458.0 1288 57.6
Lalb_Chr18g0044201 Lupinus albus HOM05D002281 ORTHO05D005599 0.0e+00 1455.7 909 79.0
Actinidia03823 Actinidia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1454.9 907 79.2
unitig_736.g22260 Utricularia gibba HOM05D002281 ORTHO05D005599 0.0e+00 1416.7 1184 63.9
CsaV3_1G040360 Cucumis sativus L. HOM05D002281 ORTHO05D005599 0.0e+00 1414.8 913 76.7
ClCG03G011410 Citrullus lanatus HOM05D002281 ORTHO05D005599 0.0e+00 1413.7 912 76.3
MD12G1252900 Malus domestica HOM05D002281 ORTHO05D005599 0.0e+00 1372.1 835 81.2
Peaxi162Scf00285g00226 Petunia axillaris HOM05D002281 ORTHO05D005599 0.0e+00 1348.6 909 74.1
Pp3c2_6040 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1299.3 1311 51.8
DCAR_005524 Daucus carota HOM05D002281 ORTHO05D005599 0.0e+00 1296.2 952 69.9
ATR0787G096 Amborella trichopoda HOM05D002281 ORTHO05D005599 0.0e+00 1256.9 919 68.0
Hma1.2p1_0153F.1_g067920 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 1081.6 687 79.6
Ah.06g188740 Amaranthus hybridus HOM05D002281 ORTHO05D005599 1.6e-239 833.9 824 55.1
Lj2A49T37 Lonicera japonica HOM05D002281 ORTHO05D005599 7.0e-235 818.5 479 87.1
CAN.G61.7 Capsicum annuum HOM05D002281 ORTHO05D005599 1.9e-232 810.4 803 55.9
AUR62006997 Chenopodium quinoa HOM05D002281 ORTHO05D005599 9.8e-213 745.0 499 78.2
MD12G1252700 Malus domestica HOM05D002281 ORTHO05D005599 1.4e-203 714.5 454 81.5
SHI14430 Sapria himalayana HOM05D002281 ORTHO05D005599 1.6e-191 674.5 552 64.7
Actinidia03824 Actinidia chinensis HOM05D002281 ORTHO05D005599 1.1e-176 625.2 349 91.7
RcHm_v2.0_Chr3g0448911 Rosa chinensis HOM05D002281 ORTHO05D005599 8.4e-172 609.0 349 89.4
SEGI_41506 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.4e-171 608.2 420 72.1
CAN.G61.6 Capsicum annuum HOM05D002281 ORTHO05D005599 3.0e-169 600.5 348 89.1
Lalb_Chr18g0044191 Lupinus albus HOM05D002281 ORTHO05D005599 3.0e-169 600.5 348 88.5
ATR0787G220 Amborella trichopoda HOM05D002281 ORTHO05D005599 4.0e-166 590.1 349 86.5
CDE01G0796 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 2.1e-162 577.8 449 64.6
ClCG03G011400 Citrullus lanatus HOM05D002281 ORTHO05D005599 7.4e-160 569.3 351 83.8
CsaV3_1G040370 Cucumis sativus L. HOM05D002281 ORTHO05D005599 1.4e-155 555.1 351 82.3
CBR_g23328 Chara braunii HOM05D002281 ORTHO05D005599 2.1e-146 524.6 637 44.6
CDE01G0576 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 2.5e-144 517.7 381 69.0
Psat0s2603g0080 Pisum sativum HOM05D002281 ORTHO05D005599 2.2e-143 514.6 333 75.4
vmacro19963 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 6.9e-142 509.6 395 70.6
Cpa.g.sc51.41 Carica papaya HOM05D002281 ORTHO05D005599 9.4e-139 499.2 299 79.3
Peaxi162Scf00285g00225 Petunia axillaris HOM05D002281 ORTHO05D005599 2.1e-138 498.0 275 91.6
DCAR_005525 Daucus carota HOM05D002281 ORTHO05D005599 1.5e-128 465.3 255 91.8
Haze_04492 Corylus avellana HOM05D002281 ORTHO05D005599 4.5e-117 427.2 277 81.2
CAN.G61.8 Capsicum annuum HOM05D002281 ORTHO05D005599 2.2e-116 424.9 408 56.9
HPP92_013016 Vanilla planifolia HOM05D002281 ORTHO05D005599 6.1e-114 416.8 304 67.4
HPP92_013015 Vanilla planifolia HOM05D002281 ORTHO05D005599 6.3e-111 406.8 348 62.9
Lj2A49G34 Lonicera japonica HOM05D002281 ORTHO05D005599 7.7e-109 399.8 243 81.1
arahy.Tifrunner.gnm1.ann1.I7KFZB Arachis hypogaea HOM05D002281 ORTHO05D005599 1.6e-101 375.6 264 76.5
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 2.8e-98 364.8 260 74.6
SEGI_00068 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 5.0e-84 317.4 264 60.6
vmacro19965 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 5.8e-72 277.3 166 80.1
Hma1.2p1_0153F.1_g067900 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 1.2e-69 269.6 154 89.0
CBR_g23326 Chara braunii HOM05D002281 ORTHO05D005599 1.7e-68 265.8 464 34.3
Ah.06g188770 Amaranthus hybridus HOM05D002281 ORTHO05D005599 9.3e-62 243.4 134 91.0
vmacro19966 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 1.7e-55 222.6 425 36.5
Cc10_g10600 Coffea canephora HOM05D002281 ORTHO05D005599 1.9e-54 219.2 130 86.9
SHI14432 Sapria himalayana HOM05D002281 ORTHO05D005599 1.8e-52 212.6 142 71.1
Lj2A50T26 Lonicera japonica HOM05D002281 ORTHO05D005599 2.3e-52 212.2 131 77.9
Lj2A49T38 Lonicera japonica HOM05D002281 ORTHO05D005599 1.7e-47 196.1 119 76.5
Lj2A49G35 Lonicera japonica HOM05D002281 ORTHO05D005599 2.2e-47 195.7 127 74.8
BraA03t10210Z Brassica rapa HOM05D002281 ORTHO05D005599 7.4e-43 180.6 123 78.9
CBR_g74560 Chara braunii HOM05D002281 ORTHO05D005599 1.0e-39 170.2 163 57.1
CDE02G3044 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 8.4e-39 167.2 127 65.4
A03p08860 Brassica napus HOM05D002281 ORTHO05D005599 1.0e-36 160.2 123 70.7
Gorai.007G272700 Gossypium raimondii HOM05D002281 ORTHO05D005599 3.0e-36 158.7 98 77.6
Gohir.D11G253675 Gossypium hirsutum HOM05D002281 ORTHO05D005599 1.9e-35 156.0 98 76.5
SEGI_02952 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.6e-34 152.9 113 66.4
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 3.1e-33 148.7 128 64.1
SEGI_33538 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 5.1e-28 131.3 95 63.2
Gohir.D11G253550 Gossypium hirsutum HOM05D002281 ORTHO05D005599 4.8e-26 124.8 73 76.7
Gorai.007G272500 Gossypium raimondii HOM05D002281 ORTHO05D005599 4.8e-26 124.8 73 75.3
Gohir.A11G244201 Gossypium hirsutum HOM05D002281 ORTHO05D005599 6.5e-23 114.4 72 69.4
SHI14427 Sapria himalayana HOM05D000030 ORTHO05D000009 8.5e-23 114.0 112 56.2
Nn6g32299 Nelumbo nucifera HOM05D002281 ORTHO05D005599 1.6e-21 109.8 73 69.9
SEGI_28731 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 3.6e-21 108.6 85 63.5
arahy.Tifrunner.gnm1.ann1.57298L Arachis hypogaea HOM05D002281 ORTHO05D005599 1.0e-15 90.5 104 51.0
HPP92_013017 Vanilla planifolia HOM05D002281 ORTHO05D005599 1.0e-12 80.5 54 70.4
QL06p040095 Quercus lobata HOM05D002281 ORTHO05D005599 1.4e-09 70.1 77 51.9
Ah.06g188760 Amaranthus hybridus HOM05D002281 ORTHO05D006774 2.0e-08 66.2 142 34.5
vmacro19964 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 1.3e-07 63.5 32 84.4
Gorai.007G272800 Gossypium raimondii HOM05D002281 ORTHO05D046983 4.2e-06 58.5 29 86.2
Gohir.D11G253750 Gossypium hirsutum HOM05D002281 ORTHO05D046983 7.2e-06 57.8 29 82.8


User provided reference genes

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