Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g25210 Schrenkiella parvula HOM05D004989 ORTHO05D006335 1.6e-208 729.2 373 100.0
AL6G30570 Arabidopsis lyrata HOM05D004989 ORTHO05D006335 2.4e-191 672.2 373 92.8
Thhalv10013830m.g Eutrema salsugineum HOM05D004989 ORTHO05D006335 5.3e-191 671.0 372 93.0
BcaB01g04874 Brassica carinata HOM05D004989 ORTHO05D006335 3.2e-188 661.8 373 90.6
BolC3t13560H Brassica oleracea HOM05D004989 ORTHO05D006335 1.2e-187 659.8 373 90.9
Carub.0006s1748 Capsella rubella HOM05D004989 ORTHO05D006335 3.5e-187 658.3 374 91.7
BcaB01g05136 Brassica carinata HOM05D004989 ORTHO05D006335 8.7e-186 653.7 373 89.8
BraA03t10257Z Brassica rapa HOM05D004989 ORTHO05D006335 3.6e-184 648.3 386 88.1
A03p09380 Brassica napus HOM05D004989 ORTHO05D006335 4.0e-183 644.8 363 91.7
CARHR193800 Cardamine hirsuta HOM05D004989 ORTHO05D006335 4.0e-183 644.8 373 89.3
AT5G19150 Arabidopsis thaliana HOM05D004989 ORTHO05D006335 4.5e-182 641.3 373 90.3
C03p10950 Brassica napus HOM05D004989 ORTHO05D006335 4.2e-180 634.8 382 86.4
Aa31LG11G10490 Aethionema arabicum HOM05D004989 ORTHO05D006335 1.4e-175 619.8 377 85.7
C03p10960 Brassica napus HOM05D004989 ORTHO05D006335 3.4e-174 615.1 372 86.0
BraA02t05485Z Brassica rapa HOM05D004989 ORTHO05D006335 7.2e-164 580.9 322 92.5
BcaC03g13646 Brassica carinata HOM05D004989 ORTHO05D006335 1.1e-161 573.5 322 90.7
BolC2t06940H Brassica oleracea HOM05D004989 ORTHO05D006335 1.1e-161 573.5 322 90.7
BcaB05g23373 Brassica carinata HOM05D004989 ORTHO05D006335 2.5e-161 572.4 322 91.3
A02p05270 Brassica napus HOM05D004989 ORTHO05D006335 9.7e-161 570.5 319 90.6
THA.LOC104818802 Tarenaya hassleriana HOM05D004989 ORTHO05D006335 1.7e-157 559.7 388 76.5
C02p10390 Brassica napus HOM05D004989 ORTHO05D006335 2.2e-157 559.3 327 88.1
C03p10860 Brassica napus HOM05D004989 ORTHO05D006335 1.2e-142 510.4 366 75.7
CiPaw.02G093300 Carya illinoinensis HOM05D004989 ORTHO05D006335 5.9e-142 508.1 380 68.9
BcaB01g05294 Brassica carinata HOM05D004989 ORTHO05D006335 8.5e-141 504.2 380 73.7
Thecc.04G224100 Theobroma cacao HOM05D004989 ORTHO05D006335 1.5e-140 503.4 383 70.0
MD16G1186000 Malus domestica HOM05D004989 ORTHO05D006335 1.6e-139 500.0 387 69.5
Cfa015597 Carpinus fangiana HOM05D004989 ORTHO05D006335 4.7e-139 498.4 382 70.2
Prupe.1G152800 Prunus persica HOM05D004989 ORTHO05D006335 4.7e-139 498.4 380 70.3
Gohir.D02G037100 Gossypium hirsutum HOM05D004989 ORTHO05D006335 1.0e-138 497.3 382 69.6
CSS0017868 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 1.8e-138 496.5 353 71.7
Gorai.005G041000 Gossypium raimondii HOM05D004989 ORTHO05D006335 2.3e-138 496.1 382 69.4
Manes.03G183100 Manihot esculenta HOM05D004989 ORTHO05D006335 2.3e-138 496.1 377 69.2
Potri.008G203600 Populus trichocarpa HOM05D004989 ORTHO05D006335 3.0e-138 495.7 376 69.4
VMungo1215G0587 Vigna mungo HOM05D004989 ORTHO05D006335 3.0e-138 495.7 357 72.0
arahy.Tifrunner.gnm1.ann1.L7AGGG Arachis hypogaea HOM05D004989 ORTHO05D006335 4.0e-138 495.4 363 71.6
Dinv44490 Davidia involucrata HOM05D004989 ORTHO05D006335 1.2e-137 493.8 356 71.3
Dinv38405 Davidia involucrata HOM05D004989 ORTHO05D006335 1.5e-137 493.4 356 71.6
arahy.Tifrunner.gnm1.ann1.8A1ZYN Arachis hypogaea HOM05D004989 ORTHO05D006335 3.3e-137 492.3 363 71.3
Gohir.A02G029300 Gossypium hirsutum HOM05D004989 ORTHO05D006335 3.3e-137 492.3 382 68.8
Lalb_Chr18g0056141 Lupinus albus HOM05D004989 ORTHO05D006335 7.5e-137 491.1 377 68.7
CSS0000312 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 2.8e-136 489.2 357 70.3
Lj6g0002948 Lotus japonicus HOM05D004989 ORTHO05D006335 3.7e-136 488.8 359 71.6
RcHm_v2.0_Chr4g0417841 Rosa chinensis HOM05D004989 ORTHO05D006335 3.7e-136 488.8 382 68.6
PSO017G3853 Papaver somniferum HOM05D004989 ORTHO05D006335 6.3e-136 488.0 368 69.8
GSVIVG01017902001 Vitis vinifera HOM05D004989 ORTHO05D006335 6.3e-136 488.0 366 70.8
QL06p003872 Quercus lobata HOM05D004989 ORTHO05D006335 2.4e-135 486.1 394 66.0
Aqoxy3G00936 Aquilegia oxysepala HOM05D004989 ORTHO05D006335 4.1e-135 485.3 356 69.7
FvH4_4g14760 Fragaria vesca HOM05D004989 ORTHO05D006335 7.0e-135 484.6 376 68.9
TAR365G0616 Trochodendron aralioides HOM05D004989 ORTHO05D006335 7.0e-135 484.6 370 68.9
EL10Ac3g05973 Beta vulgaris HOM05D004989 ORTHO05D006335 1.6e-134 483.4 374 67.1
Glyma.17G016200 Glycine max HOM05D004989 ORTHO05D006335 2.7e-134 482.6 352 70.2
MELO3C006557.2 Cucumis melo HOM05D004989 ORTHO05D006335 7.7e-134 481.1 360 70.0
CANSAT78G0752 Cannabis sativa HOM05D004989 ORTHO05D006335 1.0e-133 480.7 361 70.9
Glyma.07G257800 Glycine max HOM05D004989 ORTHO05D006335 1.0e-133 480.7 355 69.9
TWI73G0966 Tripterygium wilfordii HOM05D004989 ORTHO05D006335 1.0e-133 480.7 368 67.7
Atru.chr4.2544 Acer truncatum HOM05D004989 ORTHO05D006335 1.3e-133 480.3 312 77.2
C03p10910 Brassica napus HOM05D004989 ORTHO05D006335 1.3e-133 480.3 257 93.8
Medtr2g022530 Medicago truncatula HOM05D004989 ORTHO05D006335 1.3e-133 480.3 353 70.0
Sed0017941 Sechium edule HOM05D004989 ORTHO05D006335 1.3e-133 480.3 357 69.5
CsaV3_3G013610 Cucumis sativus L. HOM05D004989 ORTHO05D006335 1.7e-133 479.9 360 70.3
Peaxi162Scf00134g02033 Petunia axillaris HOM05D004989 ORTHO05D006335 1.7e-133 479.9 358 69.8
Cc03_g03230 Coffea canephora HOM05D004989 ORTHO05D006335 2.9e-133 479.2 364 69.0
Nn1g02182 Nelumbo nucifera HOM05D004989 ORTHO05D006335 2.9e-133 479.2 368 68.5
Eucgr.B01122 Eucalyptus grandis HOM05D004989 ORTHO05D006335 1.9e-132 476.5 356 70.2
COL.COLO4_26626 Corchorus olitorius HOM05D004989 ORTHO05D006335 2.5e-132 476.1 416 62.3
HanXRQChr12g0359311 Helianthus annuus HOM05D004989 ORTHO05D006335 3.6e-131 472.2 359 68.5
Sabra08G0157900 Salix brachista HOM05D004989 ORTHO05D006335 8.0e-131 471.1 412 62.4
Phvul.003G091700 Phaseolus vulgaris HOM05D004989 ORTHO05D006335 2.3e-130 469.5 321 73.8
Ca_00634_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 4.0e-130 468.8 363 67.2
ECA234G2869 Erigeron canadensis HOM05D004989 ORTHO05D006335 1.5e-129 466.8 326 71.8
MBI14_g28267_MAGBIO Magnolia biondii HOM05D004989 ORTHO05D006335 3.4e-129 465.7 372 65.6
FAN17G0130 Fragaria x ananassa HOM05D004989 ORTHO05D006335 5.7e-129 464.9 395 64.6
CDE07G1289 Ceratophyllum demersum HOM05D004989 ORTHO05D006335 2.2e-128 463.0 357 68.1
Migut.G00301 Erythranthe guttata HOM05D004989 ORTHO05D006335 2.2e-128 463.0 364 67.0
vmacro15315 Vaccinium macrocarpon HOM05D004989 ORTHO05D006335 2.2e-128 463.0 355 67.0
MSTRG.4001 Avicennia marina HOM05D004989 ORTHO05D006335 1.4e-127 460.3 359 67.1
CAN.G69.27 Capsicum annuum HOM05D004989 ORTHO05D006335 2.4e-127 459.5 314 72.6
AUR62026218 Chenopodium quinoa HOM05D004989 ORTHO05D006335 2.4e-127 459.5 371 65.2
Sopen01g031620 Solanum pennellii HOM05D004989 ORTHO05D006335 2.4e-127 459.5 314 72.9
SalBow2G0224 Salvia bowleyana HOM05D004989 ORTHO05D006335 3.1e-127 459.1 371 65.0
Solyc01g079860.3 Solanum lycopersicum HOM05D004989 ORTHO05D006335 5.4e-127 458.4 314 73.2
PSO478G2898 Papaver somniferum HOM05D004989 ORTHO05D006335 2.0e-126 456.4 317 73.5
Ciclev10005119m.g Citrus clementina HOM05D004989 ORTHO05D006335 2.9e-125 452.6 317 73.5
MSTRG.10011 Avicennia marina HOM05D004989 ORTHO05D006335 1.1e-124 450.7 314 72.9
HPP92_005520 Vanilla planifolia HOM05D004989 ORTHO05D006335 1.1e-124 450.7 361 65.7
Rhsim02G0020900 Rhododendron simsii HOM05D004989 ORTHO05D006335 1.9e-124 449.9 394 60.7
unitig_736.g22488 Utricularia gibba HOM05D004989 ORTHO05D006335 2.5e-124 449.5 359 64.6
RcHm_v2.0_Chr0c32g0501661 Rosa chinensis HOM05D004989 ORTHO05D006335 7.2e-124 448.0 353 68.0
Zm00001eb168810 Zea mays HOM05D004989 ORTHO05D006335 9.5e-124 447.6 358 66.2
Ah.07g202120 Amaranthus hybridus HOM05D004989 ORTHO05D006335 2.1e-123 446.4 350 66.0
RcHm_v2.0_Chr0c32g0501471 Rosa chinensis HOM05D004989 ORTHO05D006335 2.1e-123 446.4 370 64.3
FAN22G1009 Fragaria x ananassa HOM05D004989 ORTHO05D006335 6.1e-123 444.9 394 62.7
Hund12013 Selenicereus undatus HOM05D004989 ORTHO05D006335 6.1e-123 444.9 317 69.7
Nitab4.5_0005927g0020 Nicotiana tabacum HOM05D004989 ORTHO05D006335 3.0e-122 442.6 392 62.8
Os11g0276300 Oryza sativa ssp. japonica HOM05D004989 ORTHO05D006335 8.9e-122 441.0 370 63.0
Oeu042787.2 Olea europaea HOM05D004989 ORTHO05D006335 3.4e-121 439.1 429 58.5
ATR0743G104 Amborella trichopoda HOM05D004989 ORTHO05D006335 2.8e-120 436.0 358 64.2
Nitab4.5_0000630g0050 Nicotiana tabacum HOM05D004989 ORTHO05D006335 2.8e-120 436.0 290 76.2
PGSC0003DMG400009024 Solanum tuberosum HOM05D004989 ORTHO05D006335 4.9e-120 435.3 292 75.3
Lj6g0017812 Lotus japonicus HOM05D004989 ORTHO05D006335 3.8e-117 425.6 321 68.5
Haze_00947 Corylus avellana HOM05D004989 ORTHO05D006335 8.6e-117 424.5 351 65.5
RcHm_v2.0_Chr3g0483801 Rosa chinensis HOM05D004989 ORTHO05D006335 5.6e-116 421.8 284 75.0
Actinidia36991 Actinidia chinensis HOM05D004989 ORTHO05D006335 1.6e-115 420.2 351 66.1
Sc13g0004100 Simmondsia chinensis HOM05D004989 ORTHO05D006335 2.3e-114 416.4 313 68.4
Psat1g182800 Pisum sativum HOM05D004989 ORTHO05D006335 9.5e-108 394.4 255 76.1
Lj6A574T37 Lonicera japonica HOM05D004989 ORTHO05D006335 1.6e-107 393.7 250 77.2
Hma1.2p1_2553F.1_g324330 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 6.4e-104 381.7 257 76.3
Mapoly0063s0079 Marchantia polymorpha HOM05D004989 ORTHO05D006335 1.0e-101 374.4 317 61.5
SMO361G0104 Selaginella moellendorffii HOM05D004989 ORTHO05D006335 6.6e-101 371.7 306 60.5
SHI00391 Sapria himalayana HOM05D004989 ORTHO05D006335 3.2e-95 352.8 293 61.4
CBR_g26053 Chara braunii HOM05D004989 ORTHO05D006335 2.1e-94 350.1 328 55.2
Duzib151G0886 Durio zibethinus HOM05D004989 ORTHO05D006335 8.1e-91 338.2 369 55.6
ClCG05G005360 Citrullus lanatus HOM05D004989 ORTHO05D006335 5.2e-90 335.5 243 70.4
PGR142G2933 Punica granatum HOM05D004989 ORTHO05D006335 3.5e-86 322.8 379 50.4
HPP92_005588 Vanilla planifolia HOM05D004989 ORTHO05D006335 2.3e-85 320.1 297 59.9
arahy.Tifrunner.gnm1.ann1.BS3LH0 Arachis hypogaea HOM05D004989 ORTHO05D006335 6.9e-82 308.5 363 50.7
AagrBONN_evm.TU.Sc2ySwM_344.1251 Anthoceros agrestis HOM05D004989 ORTHO05D006335 1.5e-81 307.4 324 52.8
Pp3c8_1650 Physcomitrium patens HOM05D004989 ORTHO05D006335 2.6e-81 306.6 283 56.5
SGA_v2.0_scaffold39G15320 Striga asiatica HOM05D004989 ORTHO05D006335 3.8e-80 302.8 198 76.8
FAN07G2774 Fragaria x ananassa HOM05D004989 ORTHO05D006335 5.3e-74 282.3 283 56.9
Hma1.2p1_2553F.1_g324320 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 1.3e-72 277.7 201 72.1
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 1.3e-67 261.2 179 74.3
Cre06.g250500 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 2.9e-64 250.0 339 40.4
arahy.Tifrunner.gnm1.ann1.J5ZRE9 Arachis hypogaea HOM05D004989 ORTHO05D006335 6.4e-64 248.8 190 66.8
Cpa.g.sc147.7 Carica papaya HOM05D004989 ORTHO05D006335 1.2e-62 244.6 169 74.0
arahy.Tifrunner.gnm1.ann1.HR1U72 Arachis hypogaea HOM05D004989 ORTHO05D006335 3.0e-61 240.0 189 66.1
Ca_00654_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 6.9e-58 228.8 201 62.2
MCO05G313 Micromonas commoda HOM05D004989 ORTHO05D006335 2.6e-57 226.9 350 38.9
SEGI_35556 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.1e-55 221.5 203 59.1
TPR.G30683 Trifolium pratense HOM05D004989 ORTHO05D006335 1.1e-55 221.5 168 67.3
Hma1.2p1_0995F.1_g245810 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 1.6e-54 217.6 169 68.0
PRCOL_00001617 Prasinoderma coloniale HOM05D004989 ORTHO05D006335 1.6e-54 217.6 357 38.9
SEGI_27897 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 6.9e-50 202.2 133 73.7
SEGI_07547 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 5.0e-48 196.1 133 71.4
Cfa024379 Carpinus fangiana HOM05D004989 ORTHO05D006335 3.6e-46 189.9 289 38.8
Atru.chr4.2545 Acer truncatum HOM05D004989 ORTHO05D006335 1.0e-45 188.3 168 61.3
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 2.2e-43 180.6 343 36.2
Hund03167 Selenicereus undatus HOM05D004989 ORTHO05D006335 4.8e-43 179.5 143 62.2
Cre05.g234664 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 7.2e-39 165.6 363 31.7
Atru.chr4.2547 Acer truncatum HOM05D004989 ORTHO05D000586 4.1e-34 149.8 125 62.4
SEGI_12399 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.3e-32 144.8 129 58.9
Cfa015379 Carpinus fangiana HOM05D000407 ORTHO05D002981 6.1e-30 136.0 170 48.2
Cpa.g.sc147.5 Carica papaya HOM05D004989 ORTHO05D006335 3.5e-25 120.2 94 69.1
TPR.G30666 Trifolium pratense HOM05D004989 ORTHO05D006335 3.6e-22 110.2 87 65.5
Actinidia08511 Actinidia chinensis HOM05D004989 ORTHO05D006335 1.2e-20 105.1 308 31.5
CBR_g19747 Chara braunii HOM05D000409 ORTHO05D000184 4.4e-20 103.2 79 63.3
Cpa.g.sc147.6 Carica papaya HOM05D004989 ORTHO05D006335 2.8e-19 100.5 67 73.1
AUR62026378 Chenopodium quinoa HOM05D004989 ORTHO05D006335 8.8e-13 79.0 71 59.2
FAN07G1160 Fragaria x ananassa HOM05D004989 ORTHO05D006335 6.6e-08 62.8 47 63.8
A10p20470 Brassica napus HOM05D004989 ORTHO05D039594 8.6e-08 62.4 42 78.6


User provided reference genes

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