Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 4.4e-124 448.0 228 100.0
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 1.1e-111 406.8 229 90.8
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 2.5e-111 405.6 227 89.9
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 3.3e-111 405.2 227 89.9
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 2.1e-110 402.5 227 89.0
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 2.1e-110 402.5 227 89.0
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 5.3e-109 397.9 228 88.2
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 5.3e-109 397.9 227 88.5
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 2.0e-108 396.0 228 88.2
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 2.4e-106 389.0 226 85.8
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 1.6e-105 386.3 228 87.7
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 7.8e-105 384.0 227 86.3
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 7.3e-103 377.5 226 81.9
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 1.3e-96 356.7 228 79.8
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 8.1e-94 347.4 227 79.3
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 3.2e-90 335.5 225 72.9
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 2.1e-89 332.8 225 72.0
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 4.6e-89 331.6 225 71.1
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 1.0e-88 330.5 224 71.4
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 2.3e-88 329.3 226 73.0
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 3.0e-88 328.9 224 72.8
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 8.7e-88 327.4 225 71.1
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 8.7e-88 327.4 221 72.4
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 1.1e-87 327.0 225 69.8
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 1.9e-87 326.2 225 72.9
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.9e-87 326.2 225 70.2
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.9e-87 326.2 225 70.2
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 1.9e-87 326.2 226 69.9
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 3.3e-87 325.5 230 68.7
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 3.3e-87 325.5 226 70.4
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 3.3e-87 325.5 222 72.1
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 7.4e-87 324.3 225 69.8
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 9.6e-87 323.9 225 70.7
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 1.3e-86 323.6 230 68.3
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 1.6e-86 323.2 225 71.6
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 2.1e-86 322.8 225 70.2
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 2.8e-86 322.4 225 70.2
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 3.7e-86 322.0 225 69.8
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 4.8e-86 321.6 225 69.3
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 4.8e-86 321.6 226 69.0
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 1.1e-85 320.5 229 68.1
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 3.1e-85 318.9 225 69.3
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 3.1e-85 318.9 225 69.3
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 4.0e-85 318.5 213 73.2
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 5.3e-85 318.2 225 70.7
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 5.3e-85 318.2 225 68.9
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 6.9e-85 317.8 225 68.9
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.2e-84 317.0 225 68.9
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 1.5e-84 316.6 222 69.8
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 2.6e-84 315.8 225 70.7
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 3.4e-84 315.5 225 68.9
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 3.4e-84 315.5 227 67.0
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 4.5e-84 315.1 213 72.3
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 5.8e-84 314.7 225 68.4
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 5.8e-84 314.7 225 70.7
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 1.0e-83 313.9 228 67.1
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 1.3e-83 313.5 225 70.2
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 1.3e-83 313.5 229 67.7
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 1.7e-83 313.2 216 70.8
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 2.2e-83 312.8 220 69.1
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 3.8e-83 312.0 220 70.5
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 6.5e-83 311.2 225 70.2
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 6.5e-83 311.2 221 70.1
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 8.4e-83 310.8 226 67.3
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 8.4e-83 310.8 226 67.7
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 8.4e-83 310.8 227 68.3
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 1.9e-82 309.7 227 67.8
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 1.9e-82 309.7 224 68.3
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 1.9e-82 309.7 225 68.0
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 7.1e-82 307.8 227 67.8
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 1.2e-81 307.0 230 63.0
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 1.2e-81 307.0 228 67.1
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.2e-81 307.0 224 67.4
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 1.6e-81 306.6 220 67.7
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.6e-81 306.6 218 68.3
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 3.5e-81 305.4 221 67.4
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 6.1e-81 304.7 227 67.4
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 1.0e-80 303.9 232 61.6
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 1.3e-80 303.5 221 67.4
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 1.3e-80 303.5 225 67.1
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 1.3e-80 303.5 225 67.1
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 5.1e-80 301.6 225 65.8
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 8.7e-80 300.8 236 61.0
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.1e-79 300.4 220 68.6
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 1.1e-79 300.4 236 61.0
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 2.5e-79 299.3 229 66.4
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 2.5e-79 299.3 229 65.9
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.5e-79 299.3 227 61.2
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.8e-78 295.8 228 61.0
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 8.2e-78 294.3 228 63.6
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 1.1e-77 293.9 214 63.6
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 1.1e-77 293.9 218 64.2
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 2.4e-77 292.7 248 60.1
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 3.1e-77 292.4 228 63.6
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 3.1e-77 292.4 222 66.2
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 3.1e-77 292.4 224 63.8
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 5.3e-77 291.6 225 65.8
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 5.9e-76 288.1 221 65.2
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 7.7e-76 287.7 216 64.8
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.0e-75 287.3 221 67.0
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 2.2e-75 286.2 227 63.0
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 3.8e-75 285.4 326 50.0
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 5.0e-75 285.0 220 63.2
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 5.0e-75 285.0 226 62.8
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 1.4e-74 283.5 219 62.6
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 1.9e-74 283.1 357 46.5
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 2.5e-74 282.7 219 62.6
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 1.6e-73 280.0 221 61.5
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 2.7e-73 279.3 221 61.5
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 3.6e-73 278.9 226 60.6
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 6.1e-73 278.1 219 63.0
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 7.9e-73 277.7 216 63.9
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 1.0e-72 277.3 227 61.7
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 2.3e-72 276.2 152 92.1
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 2.3e-72 276.2 227 59.9
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 5.1e-72 275.0 227 59.5
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 2.0e-71 273.1 308 50.0
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 4.3e-71 271.9 216 61.1
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 7.4e-71 271.2 221 62.0
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 3.7e-70 268.9 221 60.2
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 1.1e-69 267.3 220 58.6
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 1.5e-68 263.5 152 88.8
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 7.7e-68 261.2 220 57.7
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 2.8e-62 242.7 152 77.0
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 2.4e-61 239.6 180 67.8
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 4.5e-60 235.3 226 53.1
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 3.2e-58 229.2 152 70.4
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.3e-51 207.2 177 62.7
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 8.5e-51 204.5 111 91.0
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 8.5e-51 204.5 111 91.0
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 8.5e-51 204.5 143 69.2
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 2.1e-49 199.9 124 78.2
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 2.3e-48 196.4 129 74.4
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 1.5e-47 193.7 203 53.2
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 1.7e-46 190.3 167 56.3
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 3.5e-44 182.6 224 46.4
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 5.0e-43 178.7 107 79.4
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 5.2e-40 168.7 99 79.8
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 4.5e-36 155.6 109 70.6
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 1.0e-35 154.5 118 64.4
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 5.5e-34 148.7 115 60.9
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 1.6e-33 147.1 191 39.8
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 1.8e-32 143.7 120 63.3
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 4.0e-32 142.5 119 61.3
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 2.3e-27 126.7 143 45.5
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 4.3e-26 122.5 106 60.4
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 4.3e-26 122.5 83 67.5
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 2.3e-24 116.7 128 52.3
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 3.0e-19 99.8 81 58.0
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 3.7e-14 82.8 55 69.1
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 4.6e-12 75.9 65 56.9
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 4.3e-10 69.3 83 42.2
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 8.9e-08 61.6 47 59.6


User provided reference genes

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