Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 1.1e-123 447.2 329 100.0
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 4.6e-114 415.2 329 88.1
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 1.0e-113 414.1 329 88.4
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 3.0e-113 412.5 329 88.1
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 5.1e-113 411.8 329 88.1
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 1.5e-112 410.2 329 88.1
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 1.5e-112 410.2 329 88.1
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 6.2e-111 404.8 329 87.2
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 8.1e-111 404.4 329 87.2
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 4.4e-109 398.7 319 94.0
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 3.8e-108 395.6 329 86.0
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 3.8e-108 395.6 319 86.8
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 2.4e-107 392.9 319 92.5
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 2.4e-107 392.9 319 92.5
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 1.7e-105 386.7 322 86.3
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 1.8e-102 376.7 329 82.4
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 4.6e-98 362.1 303 86.1
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 2.4e-94 349.7 326 84.4
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 3.4e-93 345.9 328 75.3
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.5e-88 329.7 316 82.6
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.3e-88 329.3 316 82.9
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.3e-88 329.3 316 82.9
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 5.6e-88 328.6 328 80.2
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 7.4e-88 328.2 328 76.5
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 9.6e-88 327.8 316 82.6
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 2.8e-87 326.2 323 76.5
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 2.8e-87 326.2 319 79.9
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 6.2e-87 325.1 316 82.3
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 8.2e-87 324.7 336 70.8
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 1.4e-86 323.9 328 79.9
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 6.9e-86 321.6 318 67.6
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 5.8e-85 318.5 328 70.7
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 7.6e-85 318.2 236 85.6
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 1.3e-84 317.4 314 70.7
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 1.7e-84 317.0 328 78.4
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 6.5e-84 315.1 319 65.8
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 8.4e-84 314.7 328 76.5
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.1e-83 314.3 328 73.5
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 1.9e-83 313.5 318 71.1
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.2e-83 312.8 328 76.8
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 2.1e-82 310.1 319 71.2
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 2.1e-82 310.1 327 72.5
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 4.6e-82 308.9 325 74.8
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 6.0e-82 308.5 328 76.5
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 2.3e-81 306.6 323 70.6
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 2.3e-81 306.6 326 68.4
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 1.1e-80 304.3 314 71.0
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 1.1e-80 304.3 330 68.8
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 1.1e-80 304.3 326 71.8
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 1.1e-80 304.3 334 62.0
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 4.3e-80 302.4 316 71.5
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 5.7e-80 302.0 328 72.3
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 7.4e-80 301.6 316 69.3
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 1.3e-79 300.8 315 70.5
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 1.3e-79 300.8 337 67.4
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 2.8e-79 299.7 329 73.9
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 3.7e-79 299.3 315 70.2
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 6.3e-79 298.5 314 77.7
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 1.1e-78 297.7 323 68.4
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 1.8e-78 297.0 303 74.3
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 2.4e-78 296.6 323 64.4
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 4.1e-78 295.8 328 71.0
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 4.1e-78 295.8 318 77.7
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 4.1e-78 295.8 322 75.2
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 5.3e-78 295.4 328 73.8
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 6.9e-78 295.0 316 75.3
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 6.9e-78 295.0 319 71.5
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 1.5e-77 293.9 311 71.7
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 2.0e-77 293.5 320 72.2
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 2.0e-77 293.5 320 72.8
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 3.4e-77 292.7 305 79.7
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 3.4e-77 292.7 329 73.6
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 4.5e-77 292.4 316 75.3
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 5.9e-77 292.0 327 66.4
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 5.9e-77 292.0 327 66.4
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 5.9e-77 292.0 311 76.8
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.0e-76 291.2 326 73.6
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 2.2e-76 290.0 318 64.2
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 3.8e-76 289.3 328 69.5
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 1.1e-75 287.7 311 74.3
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 1.9e-75 287.0 329 63.5
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 2.5e-75 286.6 317 64.0
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 2.5e-75 286.6 317 64.0
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 4.2e-75 285.8 318 74.5
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 9.4e-75 284.6 320 75.0
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 1.2e-74 284.3 315 73.7
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 3.6e-74 282.7 316 74.4
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 1.0e-73 281.2 327 66.7
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 2.3e-73 280.0 346 56.6
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 3.0e-73 279.6 320 67.5
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 3.9e-73 279.3 324 72.5
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 6.7e-73 278.5 217 76.5
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 6.7e-73 278.5 291 82.1
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 1.9e-72 276.9 321 72.6
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 2.5e-72 276.6 308 76.3
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 4.3e-72 275.8 305 77.7
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 5.7e-72 275.4 216 80.1
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 1.3e-71 274.2 327 65.1
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 1.7e-71 273.9 327 66.4
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 1.7e-71 273.9 323 66.3
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 2.8e-71 273.1 293 80.2
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 4.8e-71 272.3 301 77.1
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 3.1e-70 269.6 310 73.2
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 4.1e-70 269.2 310 62.6
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 1.5e-69 267.3 217 87.1
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 5.0e-68 262.3 289 72.3
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.4e-67 260.8 297 76.8
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 9.4e-67 258.1 175 87.4
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 1.2e-66 257.7 310 68.1
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 1.6e-66 257.3 175 87.4
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 2.1e-66 256.9 245 69.8
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 4.7e-66 255.8 174 78.7
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 6.1e-66 255.4 174 77.6
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 6.7e-65 251.9 315 70.5
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.7e-64 248.8 316 60.4
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 9.7e-64 248.1 301 69.1
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 1.7e-63 247.3 356 52.8
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 3.7e-63 246.1 174 83.9
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 5.0e-60 235.7 164 77.4
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 1.4e-59 234.2 318 58.5
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 1.2e-58 231.1 143 86.7
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 3.6e-58 229.6 184 91.3
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 1.8e-57 227.3 313 56.2
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 3.5e-53 213.0 186 72.6
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 3.5e-53 213.0 293 61.1
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 1.7e-52 210.7 229 80.3
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 2.2e-52 210.3 330 58.2
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 3.8e-52 209.5 150 77.3
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 3.8e-52 209.5 324 53.7
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 1.5e-48 197.6 296 62.8
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 1.5e-48 197.6 317 56.8
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 4.4e-48 196.1 217 62.2
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 5.7e-48 195.7 308 64.3
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 1.8e-46 190.7 113 87.6
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.5e-43 181.0 167 60.5
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 4.2e-43 179.5 152 73.7
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.4e-41 174.5 308 49.0
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 5.7e-40 169.1 157 73.2
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.7e-39 167.5 129 70.5
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 2.8e-39 166.8 315 46.7
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 5.4e-38 162.5 156 63.5
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.6e-37 161.0 158 58.2
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 2.7e-37 160.2 212 79.2
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 3.5e-37 159.8 323 53.3
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 7.2e-35 152.1 151 72.2
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.4e-33 147.9 207 73.4
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 3.0e-33 146.7 331 42.0
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 6.8e-33 145.6 159 59.1
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 8.9e-33 145.2 170 54.1
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.3e-28 130.6 181 77.3
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.2e-21 108.2 84 69.0
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.6e-21 106.3 84 67.9
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.6e-21 106.3 84 67.9
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 1.9e-19 100.9 96 59.4
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 2.1e-18 97.4 144 42.4
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.1e-18 97.4 77 67.5
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 1.8e-17 94.4 102 55.9
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 2.3e-17 94.0 96 54.2
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.3e-15 88.2 77 62.3
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.9e-14 84.3 67 67.2
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 4.1e-14 83.2 67 67.2
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.6e-13 81.3 158 60.1
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 1.0e-12 78.6 160 38.1
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 1.4e-09 68.2 106 43.4
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.0e-09 66.6 62 59.7
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 5.2e-09 66.2 46 71.7
C03p68800 Brassica napus HOM05D004175 ORTHO05D004664 3.4e-08 63.5 56 58.9
HPP92_002875 Vanilla planifolia HOM05D004175 ORTHO05D004664 4.9e-07 59.7 83 43.4


User provided reference genes

Program Settings