Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 5.9e-229 797.3 426 100.0
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 2.1e-194 682.6 426 85.7
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 1.0e-188 663.7 426 83.6
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 3.0e-188 662.1 428 84.6
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 5.0e-188 661.4 424 84.9
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 5.0e-188 661.4 424 84.9
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 1.5e-187 659.8 425 84.0
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 2.5e-187 659.1 425 84.0
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 2.5e-187 659.1 425 84.0
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 1.2e-186 656.8 426 82.6
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 4.0e-185 651.7 426 84.5
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 1.7e-175 619.8 426 83.6
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 1.6e-138 496.9 426 69.5
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 8.2e-130 468.0 426 61.7
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 6.3e-90 335.5 415 47.2
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 2.4e-89 333.6 419 47.0
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 4.5e-88 329.3 419 46.5
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 4.5e-88 329.3 413 46.7
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.0e-87 328.2 419 46.5
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 1.3e-87 327.8 432 46.3
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 2.3e-87 327.0 419 46.1
Nitab4.5_0005520g0050 Nicotiana tabacum HOM05D006752 ORTHO05D008597 6.6e-87 325.5 423 46.3
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 9.5e-86 321.6 415 47.7
Nitab4.5_0001164g0060 Nicotiana tabacum HOM05D006752 ORTHO05D008597 2.8e-85 320.1 422 44.8
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 1.0e-84 318.2 431 45.5
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 1.4e-84 317.8 406 44.8
Prupe.7G235200 Prunus persica HOM05D006752 ORTHO05D008597 1.8e-84 317.4 417 45.8
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 6.8e-84 315.5 406 44.8
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 3.4e-83 313.2 406 44.8
Duzib168G0331 Durio zibethinus HOM05D006752 ORTHO05D008597 1.3e-82 311.2 422 44.8
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 2.2e-82 310.5 389 47.3
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 2.2e-82 310.5 420 45.2
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 3.1e-81 306.6 430 45.6
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 1.6e-80 304.3 410 44.4
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 2.7e-80 303.5 431 45.2
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 5.9e-80 302.4 412 44.7
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 7.8e-80 302.0 483 42.2
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 7.8e-80 302.0 403 44.9
PGSC0003DMG400020684 Solanum tuberosum HOM05D006752 ORTHO05D008597 1.3e-79 301.2 430 44.0
CAN.G377.33 Capsicum annuum HOM05D006752 ORTHO05D008597 5.0e-79 299.3 431 43.4
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 1.1e-78 298.1 418 40.9
vmacro20678 Vaccinium macrocarpon HOM05D006752 ORTHO05D008597 1.1e-78 298.1 397 45.8
ClCG06G010500 Citrullus lanatus HOM05D006752 ORTHO05D008597 5.6e-78 295.8 404 45.3
Solyc12g006710.3 Solanum lycopersicum HOM05D006752 ORTHO05D008597 9.5e-78 295.0 423 43.0
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 1.2e-77 294.7 419 42.5
Sopen12g002660 Solanum pennellii HOM05D006752 ORTHO05D008597 1.6e-77 294.3 423 43.3
EL10Ac8g18558 Beta vulgaris HOM05D006752 ORTHO05D008597 2.1e-77 293.9 427 46.1
Cpa.g.sc23.163 Carica papaya HOM05D006752 ORTHO05D008597 2.8e-77 293.5 434 44.9
Sed0015690 Sechium edule HOM05D006752 ORTHO05D008597 3.1e-76 290.0 404 44.1
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 3.1e-76 290.0 381 44.9
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 5.2e-76 289.3 424 44.8
Rhsim01G0090500 Rhododendron simsii HOM05D006752 ORTHO05D008597 1.2e-75 288.1 426 41.5
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 1.5e-75 287.7 471 42.0
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 2.6e-75 287.0 408 43.6
QL02p086379 Quercus lobata HOM05D006752 ORTHO05D008597 1.3e-74 284.6 550 37.3
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 2.9e-74 283.5 426 43.9
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 3.7e-74 283.1 423 43.7
Haze_25667 Corylus avellana HOM05D006752 ORTHO05D008597 6.4e-74 282.3 405 45.2
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 1.1e-73 281.6 416 43.0
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 1.4e-73 281.2 406 44.3
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 1.4e-73 281.2 430 40.9
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 1.9e-73 280.8 401 44.1
Cc06_g09220 Coffea canephora HOM05D006752 ORTHO05D008597 2.4e-73 280.4 424 43.9
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 5.4e-73 279.3 421 43.5
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 9.2e-73 278.5 454 40.3
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 9.2e-73 278.5 408 42.9
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 9.2e-73 278.5 437 41.6
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 1.6e-72 277.7 481 40.7
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 2.0e-72 277.3 455 41.5
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 2.7e-72 276.9 491 40.7
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 3.5e-72 276.6 434 42.4
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 1.0e-71 275.0 437 42.1
Migut.J01179 Erythranthe guttata HOM05D006752 ORTHO05D008597 6.6e-71 272.3 432 40.7
DCAR_010437 Daucus carota HOM05D006752 ORTHO05D008597 7.3e-70 268.9 423 40.9
Peaxi162Scf00984g00260 Petunia axillaris HOM05D006752 ORTHO05D008597 2.1e-69 267.3 407 43.2
SalBow6G5676 Salvia bowleyana HOM05D006752 ORTHO05D008597 2.3e-68 263.8 434 40.1
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 6.8e-68 262.3 405 40.7
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 1.2e-67 261.5 417 39.8
MELO3C025306.2 Cucumis melo HOM05D006752 ORTHO05D008597 1.5e-67 261.2 462 39.2
MBI01_g13570_MAGBIO Magnolia biondii HOM05D006752 ORTHO05D008597 4.9e-66 256.1 468 38.5
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 1.4e-65 254.6 359 42.9
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 1.4e-65 254.6 447 40.0
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 2.4e-65 253.8 434 40.3
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 4.1e-65 253.1 433 40.0
Lsat_1_v5_gn_5_99240 Lactuca sativa HOM05D006752 ORTHO05D008597 1.2e-64 251.5 419 38.9
Os01g0178100 Oryza sativa ssp. japonica HOM05D006752 ORTHO05D008597 3.9e-63 246.5 413 38.5
Oeu018257.1 Olea europaea HOM05D006752 ORTHO05D008597 9.5e-62 241.9 359 43.7
AUR62033416 Chenopodium quinoa HOM05D006752 ORTHO05D008597 8.9e-60 235.3 421 39.0
HPP92_008698 Vanilla planifolia HOM05D006752 ORTHO05D008597 7.1e-57 225.7 409 36.7
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 1.2e-53 214.9 422 37.0
Ca_05468_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 1.4e-52 211.5 210 53.3
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 1.2e-51 208.4 402 37.3
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 1.3e-50 204.9 329 41.6
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 4.2e-49 199.9 189 54.5
SEGI_05783 Sequoiadendron giganteum HOM05D006752 ORTHO05D008597 2.4e-44 184.1 493 30.8
Sc08g0007030 Simmondsia chinensis HOM05D006752 ORTHO05D008597 5.3e-44 183.0 190 48.9
CsaV3_1G030960 Cucumis sativus L. HOM05D006752 ORTHO05D008597 5.4e-33 146.4 271 40.6
Pp3c9_1660 Physcomitrium patens HOM05D006752 ORTHO05D008597 3.0e-31 140.6 416 30.0
Pp3c9_1669 Physcomitrium patens HOM05D006752 ORTHO05D008597 3.0e-31 140.6 416 30.0
Cc08_g07650 Coffea canephora HOM05D006752 ORTHO05D008597 1.8e-28 131.3 120 58.3
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 4.5e-27 126.7 507 26.6
MD00G1026200 Malus domestica HOM05D006752 ORTHO05D008597 2.9e-26 124.0 185 42.7
MD02G1041600 Malus domestica HOM05D006752 ORTHO05D008597 1.5e-19 101.7 86 60.5
Sc08g0007040 Simmondsia chinensis HOM05D006752 ORTHO05D008597 7.6e-19 99.4 145 42.1
Zm00001eb336920 Zea mays HOM05D006752 ORTHO05D008597 7.6e-19 99.4 249 33.7
CSS0032277 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 3.2e-17 94.0 171 39.8
MD00G1027300 Malus domestica HOM05D006752 ORTHO05D008597 2.7e-16 90.9 71 62.0
CSS0016306 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 3.5e-16 90.5 121 43.8
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 1.1e-14 85.5 419 29.8
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 2.5e-14 84.3 178 33.7
Ca_30697_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 3.3e-14 84.0 123 44.7
MD02G1038900 Malus domestica HOM05D006752 ORTHO05D008597 2.8e-13 80.9 64 65.6
MD02G1041500 Malus domestica HOM05D006752 ORTHO05D008597 2.4e-12 77.8 77 53.2
MD02G1040800 Malus domestica HOM05D006752 ORTHO05D008597 2.0e-11 74.7 80 45.0
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 2.9e-10 70.9 157 31.2
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.1e-09 68.9 175 29.7
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.9e-09 68.2 203 29.1
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 3.2e-09 67.4 159 30.8
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 4.2e-09 67.0 122 34.4
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 4.2e-09 67.0 122 34.4
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 1.2e-08 65.5 179 29.6
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.6e-08 65.1 122 32.8
MCO09G826 Micromonas commoda HOM05D006752 ORTHO05D008597 1.6e-08 65.1 137 32.8
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.1e-08 64.7 263 25.9
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 3.6e-08 63.9 122 32.8
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 4.6e-08 63.5 161 29.2
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.0e-07 62.4 122 32.8
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 2.3e-07 61.2 152 30.3
TWI32G0100 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 3.9e-07 60.5 101 39.6
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 6.7e-07 59.7 123 30.1
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 6.7e-07 59.7 154 27.3
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 8.8e-07 59.3 181 27.6
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 1.5e-06 58.5 101 36.6
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 2.0e-06 58.2 226 24.3
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.5e-06 57.8 244 25.8
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 3.3e-06 57.4 43 60.5
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 4.3e-06 57.0 257 25.3
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 7.4e-06 56.2 105 33.3
MD11G1046200 Malus domestica HOM05D006752 ORTHO05D008597 7.4e-06 56.2 41 65.9
MD02G1041100 Malus domestica HOM05D006752 ORTHO05D008597 9.7e-06 55.8 43 62.8


User provided reference genes

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