Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g23280 Schrenkiella parvula HOM05D007692 ORTHO05D009696 3.8e-41 171.4 108 100.0
C09p54830 Brassica napus HOM05D007692 ORTHO05D009696 3.3e-37 158.3 108 83.3
BolC9t58343H Brassica oleracea HOM05D007692 ORTHO05D009696 3.3e-37 158.3 108 83.3
A10p18810 Brassica napus HOM05D007692 ORTHO05D009696 8.2e-36 153.7 109 82.6
BraA10t43961Z Brassica rapa HOM05D007692 ORTHO05D009696 8.2e-36 153.7 109 82.6
BcaB08g36470 Brassica carinata HOM05D007692 ORTHO05D009696 1.4e-35 152.9 108 80.6
Thhalv10015977m.g Eutrema salsugineum HOM05D007692 ORTHO05D009696 2.4e-35 152.1 106 83.0
CARHR191630 Cardamine hirsuta HOM05D007692 ORTHO05D009696 9.3e-32 140.2 110 77.3
THA.LOC104810956 Tarenaya hassleriana HOM05D007692 ORTHO05D009696 3.3e-29 131.7 110 69.1
AT5G21910 Arabidopsis thaliana HOM05D007692 ORTHO05D009696 1.2e-26 123.2 113 78.8
Carub.0006s1955 Capsella rubella HOM05D007692 ORTHO05D009696 4.5e-26 121.3 111 75.7
Carub.0005s0963 Capsella rubella HOM05D007692 ORTHO05D009696 3.8e-25 118.2 105 81.0
QL02p017055 Quercus lobata HOM05D007692 ORTHO05D009696 5.9e-18 94.4 102 50.0
QL02p017043 Quercus lobata HOM05D007692 ORTHO05D009696 2.5e-16 89.0 100 49.0
Ciclev10010178m.g Citrus clementina HOM05D007692 ORTHO05D009696 5.5e-16 87.8 94 60.6
Duzib168G1711 Durio zibethinus HOM05D007692 ORTHO05D009696 9.4e-16 87.0 94 47.9
MD15G1049600 Malus domestica HOM05D007692 ORTHO05D009696 2.7e-15 85.5 103 49.5
FvH4_2g30960 Fragaria vesca HOM05D007692 ORTHO05D009696 4.7e-15 84.7 104 46.2
Thecc.09G063700 Theobroma cacao HOM05D007692 ORTHO05D009696 4.7e-15 84.7 102 44.1
Glyma.17G225900 Glycine max HOM05D007692 ORTHO05D009696 6.1e-15 84.3 103 51.5
Manes.16G085800 Manihot esculenta HOM05D007692 ORTHO05D009696 6.1e-15 84.3 104 45.2
MD08G1071600 Malus domestica HOM05D007692 ORTHO05D009696 1.0e-14 83.6 104 46.2
COL.COLO4_21142 Corchorus olitorius HOM05D007692 ORTHO05D009696 1.4e-14 83.2 103 44.7
Psat6g022960 Pisum sativum HOM05D007692 ORTHO05D009696 1.8e-14 82.8 101 46.5
Sabra06G0170400 Salix brachista HOM05D007692 ORTHO05D009696 1.8e-14 82.8 102 44.1
BcaB01g04756 Brassica carinata HOM05D007692 ORTHO05D009696 2.3e-14 82.4 42 88.1
Lsat_1_v5_gn_7_58320 Lactuca sativa HOM05D006390 ORTHO05D007899 2.3e-14 82.4 101 48.5
Potri.006G220500 Populus trichocarpa HOM05D007692 ORTHO05D009696 3.0e-14 82.0 102 44.1
Ah.11g044290 Amaranthus hybridus HOM05D007692 ORTHO05D009696 5.2e-14 81.3 93 54.8
HanXRQChr03g0065641 Helianthus annuus HOM05D007692 ORTHO05D009696 6.7e-14 80.9 108 52.8
RcHm_v2.0_Chr6g0311901 Rosa chinensis HOM05D007692 ORTHO05D009696 1.1e-13 80.1 103 42.7
CANSAT25G1329 Cannabis sativa HOM05D007692 ORTHO05D009696 1.5e-13 79.7 101 52.5
Prupe.1G403900 Prunus persica HOM05D007692 ORTHO05D009696 1.5e-13 79.7 103 45.6
Cpa.g.sc126.21 Carica papaya HOM05D007692 ORTHO05D009696 2.0e-13 79.3 102 44.1
Medtr1g015470 Medicago truncatula HOM05D007692 ORTHO05D009696 2.0e-13 79.3 100 46.0
TPR.G38893 Trifolium pratense HOM05D007692 ORTHO05D009696 2.6e-13 79.0 101 44.6
DCAR_001232 Daucus carota HOM05D006390 ORTHO05D007899 4.4e-13 78.2 100 43.0
VMungo0647G2522 Vigna mungo HOM05D007692 ORTHO05D009696 4.4e-13 78.2 103 42.7
Nn2g12400 Nelumbo nucifera HOM05D007692 ORTHO05D009696 7.4e-13 77.4 103 39.8
TAR624G0897 Trochodendron aralioides HOM05D007692 ORTHO05D009696 7.4e-13 77.4 94 42.6
Sc06g0001120 Simmondsia chinensis HOM05D007692 ORTHO05D009696 9.7e-13 77.0 107 43.0
MELO3C016914.2 Cucumis melo HOM05D007692 ORTHO05D009696 1.3e-12 76.6 102 44.1
CsaV3_4G036060 Cucumis sativus L. HOM05D007692 ORTHO05D009696 1.3e-12 76.6 102 44.1
Gohir.D05G040100 Gossypium hirsutum HOM05D007692 ORTHO05D009696 1.3e-12 76.6 103 40.8
Gorai.009G040500 Gossypium raimondii HOM05D007692 ORTHO05D009696 1.3e-12 76.6 103 40.8
Solyc08g061640.1 Solanum lycopersicum HOM05D007692 ORTHO05D009696 1.7e-12 76.3 93 45.2
Sopen08g017100 Solanum pennellii HOM05D007692 ORTHO05D009696 1.7e-12 76.3 93 45.2
PGSC0003DMG400045083 Solanum tuberosum HOM05D007692 ORTHO05D009696 1.7e-12 76.3 93 45.2
Cfa017868 Carpinus fangiana HOM05D007692 ORTHO05D009696 2.2e-12 75.9 95 42.1
Peaxi162Scf00486g00102 Petunia axillaris HOM05D007692 ORTHO05D009696 2.2e-12 75.9 92 45.7
CAN.G567.82 Capsicum annuum HOM05D007692 ORTHO05D009696 2.8e-12 75.5 93 44.1
Nitab4.5_0008422g0010 Nicotiana tabacum HOM05D007692 ORTHO05D009696 4.8e-12 74.7 93 43.0
PGR031G0311 Punica granatum HOM05D007692 ORTHO05D009696 6.3e-12 74.3 90 47.8
Lj5g0021751 Lotus japonicus HOM05D007692 ORTHO05D009696 1.1e-11 73.6 101 42.6
VMungo1309G1304 Vigna mungo HOM05D007692 ORTHO05D009696 1.1e-11 73.6 110 41.8
Nitab4.5_0000446g0120 Nicotiana tabacum HOM05D007692 ORTHO05D009696 1.4e-11 73.2 93 41.9
PSO675G1902 Papaver somniferum HOM05D007692 ORTHO05D009696 1.4e-11 73.2 97 44.3
arahy.Tifrunner.gnm1.ann1.0E4SK3 Arachis hypogaea HOM05D007692 ORTHO05D009696 2.4e-11 72.4 103 46.6
CiPaw.15G091700 Carya illinoinensis HOM05D007692 ORTHO05D009696 2.4e-11 72.4 110 42.7
Gohir.A05G038600 Gossypium hirsutum HOM05D007692 ORTHO05D009696 2.4e-11 72.4 103 39.8
PSO541G2080 Papaver somniferum HOM05D007692 ORTHO05D009696 3.1e-11 72.0 97 44.3
ClCG05G015760 Citrullus lanatus HOM05D007692 ORTHO05D009696 7.0e-11 70.9 104 42.3
Glyma.06G056100 Glycine max HOM05D007692 ORTHO05D009696 7.0e-11 70.9 101 41.6
Haze_18297 Corylus avellana HOM05D007692 ORTHO05D009696 9.1e-11 70.5 108 40.7
Sed0007061 Sechium edule HOM05D007692 ORTHO05D009696 9.1e-11 70.5 105 39.0
TPR.G3568 Trifolium pratense HOM05D007692 ORTHO05D009696 9.1e-11 70.5 112 39.3
Nn8g39911 Nelumbo nucifera HOM05D007692 ORTHO05D009696 1.6e-10 69.7 100 44.0
SGA_v2.0_scaffold20G09157 Striga asiatica HOM05D006390 ORTHO05D007899 2.0e-10 69.3 95 40.0
Dinv22937 Davidia involucrata HOM05D007692 ORTHO05D009696 2.6e-10 68.9 111 39.6
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.6e-10 68.9 99 43.4
Phvul.009G082200 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 2.6e-10 68.9 101 40.6
Hma1.2p1_0278F.1_g111850 Hydrangea macrophylla HOM05D007692 ORTHO05D009696 3.5e-10 68.6 101 39.6
HPP92_004156 Vanilla planifolia HOM05D007692 ORTHO05D009696 3.5e-10 68.6 98 39.8
Eucgr.C00729 Eucalyptus grandis HOM05D007692 ORTHO05D009696 4.5e-10 68.2 112 39.3
Medtr3g105090 Medicago truncatula HOM05D007692 ORTHO05D009696 7.7e-10 67.4 111 40.5
Lj1g0020593 Lotus japonicus HOM05D007692 ORTHO05D009696 1.0e-09 67.0 111 50.5
TWI63G1278 Tripterygium wilfordii HOM05D007692 ORTHO05D009696 1.0e-09 67.0 102 41.2
EL10Ac2g03778 Beta vulgaris HOM05D007692 ORTHO05D009696 1.7e-09 66.2 102 41.2
Cc08_g01120 Coffea canephora HOM05D007692 ORTHO05D009696 1.7e-09 66.2 94 50.0
Lalb_Chr11g0063341 Lupinus albus HOM05D007692 ORTHO05D009696 2.2e-09 65.9 101 50.5
Oeu003971.1 Olea europaea HOM05D007692 ORTHO05D009696 2.9e-09 65.5 94 40.4
SalBow4G0926 Salvia bowleyana HOM05D007692 ORTHO05D009696 8.5e-09 63.9 107 40.2
unitig_32.g11527 Utricularia gibba HOM05D007692 ORTHO05D009696 1.5e-08 63.2 95 41.1
Zm00001eb005780 Zea mays HOM05D007692 ORTHO05D009696 1.5e-08 63.2 103 38.8
MBI13_g42817_MAGBIO Magnolia biondii HOM05D007692 ORTHO05D009696 1.9e-08 62.8 94 37.2
ATR0598G206 Amborella trichopoda HOM05D007692 ORTHO05D009696 3.2e-08 62.0 94 39.4
Aqoxy2G03896 Aquilegia oxysepala HOM05D007692 ORTHO05D009696 3.6e-07 58.5 103 35.9
Medtr1g015490 Medicago truncatula HOM05D007692 ORTHO05D009696 3.6e-07 58.5 94 41.5
Os03g0176900 Oryza sativa ssp. japonica HOM05D007692 ORTHO05D009696 6.1e-07 57.8 97 45.4
CSS0041722 Camellia sinensis var. sinensis HOM05D007692 ORTHO05D009696 6.7e-06 54.3 92 34.8
Psat5g030520 Pisum sativum HOM05D007692 ORTHO05D009696 6.7e-06 54.3 82 37.8


User provided reference genes

Program Settings