Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g22920 Schrenkiella parvula HOM05D012474 ORTHO05D008520 3.4e-123 446.0 455 100.0
C09p54250 Brassica napus HOM05D012474 ORTHO05D008520 4.2e-73 279.6 461 80.3
BcaB08g36440 Brassica carinata HOM05D012474 ORTHO05D008520 5.4e-73 279.3 462 81.4
BraA10t43930Z Brassica rapa HOM05D012474 ORTHO05D008520 6.0e-72 275.8 463 82.5
A10p18500 Brassica napus HOM05D012474 ORTHO05D008520 2.3e-71 273.9 463 82.3
BolC9t58300H Brassica oleracea HOM05D012474 ORTHO05D008520 1.1e-70 271.6 462 79.2
C09p54330 Brassica napus HOM05D012474 ORTHO05D008520 6.4e-66 255.8 452 79.2
AL6G33340 Arabidopsis lyrata HOM05D012474 ORTHO05D008520 3.5e-64 250.0 455 77.1
Carub.0006s2006 Capsella rubella HOM05D012474 ORTHO05D008520 1.0e-63 248.4 452 73.9
Thhalv10013516m.g Eutrema salsugineum HOM05D012474 ORTHO05D008520 1.1e-62 245.0 455 76.5
AT5G22320 Arabidopsis thaliana HOM05D012474 ORTHO05D008520 9.0e-60 235.3 453 79.2
CARHR191220 Cardamine hirsuta HOM05D012474 ORTHO05D008520 1.4e-57 228.0 453 71.1
BcaC04g19565 Brassica carinata HOM05D012474 ORTHO05D008520 7.9e-56 222.2 457 74.0
Aa31LG1G13230 Aethionema arabicum HOM05D012474 ORTHO05D008520 4.3e-54 216.5 458 72.7
THA.LOC104810927 Tarenaya hassleriana HOM05D007535 ORTHO05D008520 3.9e-31 140.2 455 61.8
Atru.chr3.3166 Acer truncatum HOM05D007535 ORTHO05D008520 5.0e-18 96.7 259 32.8
RcHm_v2.0_Chr5g0046091 Rosa chinensis HOM05D007535 ORTHO05D008520 1.9e-17 94.7 267 31.1
Nn6g34805 Nelumbo nucifera HOM05D007535 ORTHO05D008520 3.2e-17 94.0 260 31.9
TAR633G1755 Trochodendron aralioides HOM05D007535 ORTHO05D008520 1.5e-14 85.1 261 28.7
vmacro03328 Vaccinium macrocarpon HOM05D007535 ORTHO05D008520 1.5e-14 85.1 255 31.0
FAN11G3206 Fragaria x ananassa HOM05D007535 ORTHO05D008520 4.4e-14 83.6 269 32.3
Medtr2g086950 Medicago truncatula HOM05D007535 ORTHO05D008520 4.4e-14 83.6 267 30.7
FvH4_3g25730 Fragaria vesca HOM05D007535 ORTHO05D008520 5.7e-14 83.2 269 30.1
FAN25G3072 Fragaria x ananassa HOM05D007535 ORTHO05D008520 5.7e-14 83.2 267 30.3
FAN21G0330 Fragaria x ananassa HOM05D007535 ORTHO05D008520 7.5e-14 82.8 269 30.9
Prupe.6G137100 Prunus persica HOM05D007535 ORTHO05D008520 9.7e-14 82.4 493 49.3
Manes.04G001100 Manihot esculenta HOM05D007535 ORTHO05D008520 1.3e-13 82.0 294 29.6
Rhsim13G0113500 Rhododendron simsii HOM05D000001 ORTHO05D000003 3.7e-13 80.5 291 29.2
Cpa.g.sc195.29 Carica papaya HOM05D007535 ORTHO05D008520 9.1e-12 75.9 259 29.0
Hma1.2p1_2164F.1_g315730 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 9.1e-12 75.9 281 29.2
Hma1.2p1_2164F.1_g315740 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 9.1e-12 75.9 281 29.2
Lalb_Chr24g0393491 Lupinus albus HOM05D007535 ORTHO05D008520 9.1e-12 75.9 254 30.3
Nitab4.5_0008177g0030 Nicotiana tabacum HOM05D007535 ORTHO05D008520 9.1e-12 75.9 258 31.0
Lj2A969T70 Lonicera japonica HOM05D007535 ORTHO05D008520 1.2e-11 75.5 262 27.9
PGR119G1786 Punica granatum HOM05D007535 ORTHO05D008520 1.2e-11 75.5 254 28.7
GSVIVG01036079001 Vitis vinifera HOM05D007535 ORTHO05D008520 1.6e-11 75.1 252 29.0
Ciclev10028368m.g Citrus clementina HOM05D007535 ORTHO05D008520 2.7e-11 74.3 277 28.2
Nitab4.5_0000731g0020 Nicotiana tabacum HOM05D007535 ORTHO05D008520 2.7e-11 74.3 252 30.2
Psat5g257880 Pisum sativum HOM05D007535 ORTHO05D008520 5.9e-11 73.2 266 29.3
Hund18777 Selenicereus undatus HOM05D007535 ORTHO05D008520 7.7e-11 72.8 290 27.2
Cc00_g20950 Coffea canephora HOM05D007535 ORTHO05D008520 1.3e-10 72.0 246 27.6
ClCG01G011770 Citrullus lanatus HOM05D007535 ORTHO05D008520 1.7e-10 71.6 281 27.0
Eucgr.J00525 Eucalyptus grandis HOM05D007535 ORTHO05D008520 1.7e-10 71.6 255 31.0
Lj3g0000707 Lotus japonicus HOM05D007535 ORTHO05D008520 5.0e-10 70.1 276 28.3
CANSAT54G2250 Cannabis sativa HOM05D007535 ORTHO05D008520 6.5e-10 69.7 270 27.4
Gohir.D08G017000 Gossypium hirsutum HOM05D007535 ORTHO05D008520 8.5e-10 69.3 279 27.6
EL10Ac7g16124 Beta vulgaris HOM05D007535 ORTHO05D008520 1.1e-09 68.9 263 28.5
Haze_23344 Corylus avellana HOM05D007535 ORTHO05D008520 1.1e-09 68.9 248 29.4
Actinidia07260 Actinidia chinensis HOM05D007535 ORTHO05D008520 1.5e-09 68.6 300 26.7
Cfa009985 Carpinus fangiana HOM05D007535 ORTHO05D008520 2.5e-09 67.8 260 28.8
Gorai.004G011300 Gossypium raimondii HOM05D007535 ORTHO05D008520 2.5e-09 67.8 274 30.7
MBI17_g01489_MAGBIO Magnolia biondii HOM05D007535 ORTHO05D008520 2.5e-09 67.8 247 28.3
Thecc.09G278200 Theobroma cacao HOM05D007535 ORTHO05D008520 2.5e-09 67.8 499 39.1
MD03G1150100 Malus domestica HOM05D007535 ORTHO05D008520 4.2e-09 67.0 487 50.5
HPP92_011495 Vanilla planifolia HOM05D007535 ORTHO05D008520 4.2e-09 67.0 251 28.7
Migut.N02473 Erythranthe guttata HOM05D007535 ORTHO05D008520 5.5e-09 66.6 250 28.4
Ca_01647_v3 Cicer arietinum L. HOM05D002184 ORTHO05D002379 7.2e-09 66.2 272 27.2
Glyma.12G186700 Glycine max HOM05D007535 ORTHO05D008520 9.4e-09 65.9 268 27.2
SGA_v2.0_scaffold177G39436 Striga asiatica HOM05D007535 ORTHO05D008520 1.2e-08 65.5 254 28.3
CSS0035480 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 2.7e-08 64.3 311 25.1
Sc12g0004670 Simmondsia chinensis HOM05D007535 ORTHO05D008520 3.6e-08 63.9 267 27.0
Sc12g0004620 Simmondsia chinensis HOM05D007535 ORTHO05D008520 4.7e-08 63.5 266 27.4
TPR.G4567 Trifolium pratense HOM05D007535 ORTHO05D008520 1.0e-07 62.4 268 37.7
Glyma.13G314800 Glycine max HOM05D007535 ORTHO05D008520 1.8e-07 61.6 257 27.2
Gohir.A08G006800 Gossypium hirsutum HOM05D007535 ORTHO05D008520 1.8e-07 61.6 271 28.4
Aqoxy4G02717 Aquilegia oxysepala HOM05D007535 ORTHO05D008520 2.3e-07 61.2 256 25.8
CAN.G745.17 Capsicum annuum HOM05D007535 ORTHO05D008520 2.3e-07 61.2 282 25.2
unitig_27.g25117 Utricularia gibba HOM05D007535 ORTHO05D008520 2.3e-07 61.2 270 25.6
Actinidia24230 Actinidia chinensis HOM05D007535 ORTHO05D008520 3.0e-07 60.8 75 42.7
arahy.Tifrunner.gnm1.ann1.TGP3GH Arachis hypogaea HOM05D007535 ORTHO05D008520 3.0e-07 60.8 282 26.2
Duzib150G0908 Durio zibethinus HOM05D007535 ORTHO05D008520 3.0e-07 60.8 61 47.5
Solyc11g068690.2 Solanum lycopersicum HOM05D007535 ORTHO05D008520 3.0e-07 60.8 75 42.7
Sopen11g027410 Solanum pennellii HOM05D007535 ORTHO05D008520 3.0e-07 60.8 75 42.7
PSO384G1635 Papaver somniferum HOM05D007535 ORTHO05D008520 5.2e-07 60.1 263 25.1
Sed0017293 Sechium edule HOM05D007535 ORTHO05D008520 5.2e-07 60.1 261 26.4
Potri.004G199200 Populus trichocarpa HOM05D007535 ORTHO05D008520 6.8e-07 59.7 477 52.2
Ciclev10029981m.g Citrus clementina HOM05D007535 ORTHO05D008520 8.8e-07 59.3 278 26.3
CiPaw.14G097800 Carya illinoinensis HOM05D007535 ORTHO05D008520 1.2e-06 58.9 71 45.1
PGSC0003DMG400026347 Solanum tuberosum HOM05D007535 ORTHO05D008520 1.2e-06 58.9 75 41.3
Os01g0966400 Oryza sativa ssp. japonica HOM05D007535 ORTHO05D008520 1.5e-06 58.5 268 28.0
TWI79G0866 Tripterygium wilfordii HOM05D007535 ORTHO05D008520 1.5e-06 58.5 282 25.5
AUR62001527 Chenopodium quinoa HOM05D007535 ORTHO05D008520 2.0e-06 58.2 304 26.0
HanXRQChr14g0433121 Helianthus annuus HOM05D007535 ORTHO05D008520 3.4e-06 57.4 248 25.8
FAN16G1906 Fragaria x ananassa HOM05D007535 ORTHO05D008520 9.8e-06 55.8 258 26.4


User provided reference genes

Program Settings