Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 2.5e-181 639.0 428 100.0
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 6.7e-166 587.8 427 85.0
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 1.1e-165 587.0 428 84.8
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 2.6e-165 585.9 429 93.9
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 2.2e-164 582.8 423 85.1
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 3.7e-164 582.0 426 84.5
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 2.0e-162 576.2 435 91.5
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 2.0e-162 576.2 428 83.6
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 3.8e-161 572.0 437 87.9
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 5.0e-161 571.6 435 79.1
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 1.4e-158 563.5 441 78.0
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 9.1e-155 550.8 435 77.2
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 9.8e-141 504.2 440 70.2
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 2.2e-132 476.5 435 68.5
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 1.4e-123 447.2 448 61.8
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 1.0e-121 441.0 436 61.5
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 6.6e-121 438.3 436 61.5
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 4.3e-120 435.6 436 62.6
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 5.6e-120 435.3 442 61.1
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.4e-118 430.6 436 62.4
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.3e-118 429.9 436 62.4
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 8.9e-118 427.9 449 58.6
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 2.6e-117 426.4 449 61.0
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 4.4e-117 425.6 436 61.2
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 4.4e-117 425.6 440 61.6
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.5e-117 424.9 436 61.7
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 1.7e-116 423.7 443 59.1
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 1.7e-116 423.7 443 59.1
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 2.2e-116 423.3 449 59.5
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 4.9e-116 422.2 436 61.0
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 8.3e-116 421.4 449 60.1
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 2.7e-114 416.4 436 60.1
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 4.6e-114 415.6 436 58.7
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 1.3e-113 414.1 448 59.4
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 2.3e-113 413.3 465 56.1
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 3.9e-113 412.5 448 59.4
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 8.6e-113 411.4 435 59.8
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 3.3e-112 409.5 449 58.6
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 6.2e-111 405.2 446 57.4
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 1.1e-110 404.4 436 61.2
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 1.8e-110 403.7 413 60.8
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 6.8e-110 401.7 448 55.8
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 8.9e-110 401.4 442 56.8
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 1.5e-109 400.6 434 56.9
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 2.0e-109 400.2 432 56.9
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 9.9e-109 397.9 435 58.6
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 1.3e-108 397.5 456 55.7
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 1.7e-108 397.1 445 56.4
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.7e-108 397.1 448 55.8
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 2.2e-108 396.7 436 56.2
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 3.7e-108 396.0 434 57.8
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 8.3e-108 394.8 437 57.0
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 1.1e-107 394.4 443 56.0
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 1.4e-107 394.0 448 56.5
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 4.1e-107 392.5 436 56.7
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 1.2e-106 391.0 426 59.4
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 1.2e-106 391.0 442 57.5
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 1.6e-106 390.6 444 56.8
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 2.7e-106 389.8 438 56.4
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 4.6e-106 389.0 453 55.0
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 6.0e-106 388.7 421 58.2
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 1.0e-105 387.9 442 55.2
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 1.7e-105 387.1 448 54.0
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 2.3e-105 386.7 436 55.3
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 3.0e-105 386.3 427 61.1
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 3.0e-105 386.3 427 61.1
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 6.6e-105 385.2 447 54.1
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 8.6e-105 384.8 448 56.0
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 1.9e-104 383.6 437 59.0
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 3.3e-104 382.9 327 70.0
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 3.3e-104 382.9 445 54.8
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 3.3e-104 382.9 446 54.5
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 4.3e-104 382.5 443 55.3
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 5.6e-104 382.1 448 54.9
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 7.3e-104 381.7 449 56.1
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 1.2e-103 380.9 441 54.4
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 3.6e-103 379.4 436 55.7
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 6.2e-103 378.6 458 53.3
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 1.4e-102 377.5 442 54.5
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 2.4e-102 376.7 442 54.1
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 5.2e-102 375.6 442 54.5
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 9.9e-101 371.3 443 54.0
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 9.9e-101 371.3 446 53.4
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 9.9e-101 371.3 440 53.6
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 2.9e-100 369.8 436 55.3
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 2.9e-100 369.8 443 53.7
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 5.4e-99 365.5 454 52.9
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 1.7e-97 360.5 391 60.4
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 3.6e-95 352.8 436 53.0
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 9.0e-94 348.2 301 73.4
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 2.6e-93 346.7 343 60.6
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 1.7e-92 344.0 476 49.8
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.8e-92 342.8 379 59.4
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 4.2e-91 339.3 444 51.8
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 2.3e-89 333.6 444 50.7
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 3.0e-89 333.2 415 54.2
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 5.6e-88 328.9 332 60.5
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 2.8e-87 326.6 314 65.3
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 3.6e-87 326.2 457 47.0
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 6.2e-87 325.5 342 60.5
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 1.2e-82 311.2 335 57.6
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.1e-82 310.5 360 56.9
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 7.9e-82 308.5 209 90.0
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 1.8e-81 307.4 453 46.4
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 1.1e-80 304.7 334 64.4
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 1.3e-79 301.2 257 76.3
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 6.2e-79 298.9 326 57.4
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 9.6e-72 275.0 272 64.0
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 9.6e-72 275.0 419 45.6
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 3.7e-71 273.1 462 42.4
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.6e-66 257.7 334 53.0
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 3.5e-66 256.5 344 50.0
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 8.2e-63 245.4 270 55.6
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 1.4e-57 228.0 364 43.1
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 1.5e-56 224.6 455 40.2
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.8e-47 193.7 298 47.3
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 3.5e-45 186.8 244 50.8
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 4.2e-43 179.9 196 54.1
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 9.4e-43 178.7 364 38.2
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 3.6e-42 176.8 360 40.6
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 9.7e-40 168.7 187 56.1
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 3.7e-39 166.8 447 33.1
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 2.6e-37 160.6 425 33.6
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 1.0e-36 158.7 166 58.4
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 2.2e-36 157.5 157 62.4
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 2.9e-36 157.1 147 63.3
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 5.7e-32 142.9 249 45.0
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 2.5e-27 127.5 94 80.9
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 4.2e-27 126.7 273 39.6
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 7.2e-27 125.9 149 57.0
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.4e-25 121.7 161 50.3
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 1.5e-24 118.2 122 54.9
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 3.7e-23 113.6 181 48.6
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 1.1e-19 102.1 61 91.8
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 1.2e-16 92.0 147 42.2
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.5e-16 91.7 60 80.0
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 2.9e-15 87.4 126 48.4
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 3.7e-15 87.0 128 46.1
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 6.3e-15 86.3 91 61.5
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 3.2e-14 84.0 53 84.9
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 5.6e-11 73.2 48 81.2


User provided reference genes

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