Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 2.8e-79 298.5 147 100.0
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 2.8e-71 271.9 154 89.0
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 2.8e-71 271.9 154 89.0
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 6.2e-71 270.8 152 89.5
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 2.4e-70 268.9 152 88.2
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 5.8e-69 264.2 151 90.1
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 2.2e-68 262.3 148 85.8
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 3.8e-68 261.5 147 87.8
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 1.9e-67 259.2 152 84.2
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 7.1e-67 257.3 149 87.2
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 2.1e-66 255.8 151 84.1
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 4.6e-66 254.6 150 86.7
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 6.0e-66 254.2 151 86.1
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 1.3e-65 253.1 147 86.4
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 2.3e-65 252.3 149 86.6
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 6.7e-65 250.8 151 85.4
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 3.7e-63 245.0 156 82.1
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 1.3e-60 236.5 152 75.7
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 2.9e-60 235.3 145 79.3
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 6.1e-58 227.6 165 75.8
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.4e-57 226.5 153 73.9
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 2.5e-56 222.2 148 79.7
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 2.8e-55 218.8 137 75.2
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.8e-49 199.5 157 64.3
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 3.9e-49 198.4 152 65.8
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 2.6e-48 195.7 159 64.8
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 4.4e-48 194.9 136 71.3
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.2e-45 186.8 158 60.1
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 2.6e-45 185.7 160 58.8
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 2.6e-45 185.7 158 59.5
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 1.3e-44 183.3 140 66.4
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 1.3e-44 183.3 158 58.9
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 1.3e-44 183.3 158 58.9
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 1.7e-44 183.0 140 66.4
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 3.8e-44 181.8 149 61.7
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 3.8e-44 181.8 158 62.7
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 5.0e-44 181.4 154 59.7
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 6.5e-44 181.0 130 67.7
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 8.5e-44 180.6 158 58.2
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.1e-43 180.3 154 59.1
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 1.4e-43 179.9 141 63.8
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.4e-43 179.9 130 64.6
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 1.9e-43 179.5 132 65.9
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 1.9e-43 179.5 128 70.3
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 5.5e-43 177.9 136 61.8
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 5.5e-43 177.9 141 63.8
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 1.2e-42 176.8 153 60.1
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 1.6e-42 176.4 123 69.9
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 2.7e-42 175.6 131 67.2
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 3.6e-42 175.3 156 59.0
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 3.6e-42 175.3 156 59.0
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 3.6e-42 175.3 156 59.0
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 1.4e-41 173.3 160 59.4
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 1.4e-41 173.3 154 61.7
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 1.8e-41 172.9 122 68.9
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 5.2e-41 171.4 161 57.1
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 5.2e-41 171.4 157 58.0
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 6.7e-41 171.0 145 61.4
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 8.8e-41 170.6 146 59.6
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 8.8e-41 170.6 137 59.9
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 1.1e-40 170.2 152 58.6
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 1.5e-40 169.9 135 61.5
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 5.7e-40 167.9 160 54.4
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 7.4e-40 167.5 159 57.9
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 1.7e-39 166.4 143 54.5
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 4.8e-39 164.9 137 59.1
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 6.3e-39 164.5 152 55.3
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 8.2e-39 164.1 152 56.6
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 8.2e-39 164.1 145 60.7
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 1.4e-38 163.3 139 59.7
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.4e-38 163.3 162 51.9
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 1.8e-38 162.9 145 57.9
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 1.8e-38 162.9 96 77.1
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 1.8e-38 162.9 140 60.7
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 2.4e-38 162.5 149 59.1
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 4.1e-38 161.8 151 58.9
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 4.1e-38 161.8 151 57.6
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 7.0e-38 161.0 158 56.3
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 9.1e-38 160.6 149 56.4
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 9.1e-38 160.6 139 57.6
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 9.1e-38 160.6 152 55.3
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.2e-37 160.2 142 57.7
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 2.0e-37 159.5 154 56.5
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.0e-37 159.5 137 56.9
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 3.5e-37 158.7 149 55.7
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 4.5e-37 158.3 155 56.8
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 4.5e-37 158.3 161 52.8
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 4.5e-37 158.3 162 55.6
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 7.7e-37 157.5 150 53.3
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 1.0e-36 157.1 155 56.1
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 2.9e-36 155.6 83 80.7
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 2.9e-36 155.6 142 57.0
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 5.0e-36 154.8 131 61.1
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 5.0e-36 154.8 148 53.4
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 6.5e-36 154.5 95 71.6
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 8.5e-36 154.1 161 53.4
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 1.1e-35 153.7 148 52.7
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 1.5e-35 153.3 146 54.1
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 2.5e-35 152.5 90 74.4
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 3.2e-35 152.1 154 55.8
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 4.2e-35 151.8 87 75.9
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 4.2e-35 151.8 79 81.0
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 5.5e-35 151.4 142 54.9
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 9.4e-35 150.6 146 54.1
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 2.7e-34 149.1 103 67.0
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 2.7e-34 149.1 79 82.3
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 3.6e-34 148.7 131 58.8
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 4.7e-34 148.3 128 54.7
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 8.0e-34 147.5 155 51.6
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 8.0e-34 147.5 126 55.6
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 1.0e-33 147.1 97 68.0
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 5.2e-33 144.8 95 67.4
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 8.8e-33 144.1 84 77.4
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 1.2e-32 143.7 145 55.2
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 2.2e-31 139.4 135 55.6
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 9.1e-30 134.0 95 64.2
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 7.7e-29 131.0 108 56.5
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 1.5e-27 126.7 127 50.4
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 4.7e-26 121.7 107 57.0
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.0e-25 120.6 152 43.4
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 2.3e-25 119.4 81 76.5
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 8.8e-25 117.5 54 88.9
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 1.5e-24 116.7 113 55.8
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 3.4e-24 115.5 86 66.3
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 3.4e-24 115.5 77 71.4
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 9.8e-24 114.0 112 55.4
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 1.7e-23 113.2 52 90.4
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 4.1e-22 108.6 79 64.6
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 3.5e-21 105.5 137 44.5
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 2.9e-20 102.4 126 45.2
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 6.6e-20 101.3 86 51.2
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 1.0e-17 94.0 94 47.9
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 4.0e-17 92.0 155 38.1
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 4.9e-15 85.1 95 50.5
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 5.4e-14 81.6 63 65.1
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 3.8e-12 75.5 85 41.2
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 7.3e-11 71.2 83 49.4
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 8.0e-10 67.8 105 38.1
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 5.2e-09 65.1 44 61.4
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 1.2e-08 63.9 43 62.8
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 2.2e-07 59.7 41 61.0
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 1.1e-06 57.4 49 53.1


User provided reference genes

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