Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g20560 Schrenkiella parvula HOM05D005811 ORTHO05D007070 8.8e-48 193.4 102 100.0
A10p15470 Brassica napus HOM05D005811 ORTHO05D007070 3.5e-44 181.4 102 91.2
BolC9t57959H Brassica oleracea HOM05D005811 ORTHO05D007070 3.5e-44 181.4 102 91.2
BraA10t43688Z Brassica rapa HOM05D005811 ORTHO05D007070 3.5e-44 181.4 102 91.2
BcaC04g19852 Brassica carinata HOM05D005811 ORTHO05D007070 1.7e-43 179.1 102 90.2
BcaC04g19853 Brassica carinata HOM05D005811 ORTHO05D007070 1.7e-43 179.1 102 90.2
C09p51020 Brassica napus HOM05D005811 ORTHO05D007070 2.2e-43 178.7 102 90.2
Thhalv10015099m.g Eutrema salsugineum HOM05D005811 ORTHO05D007070 8.0e-41 170.2 103 87.4
CARHR272810 Cardamine hirsuta HOM05D005811 ORTHO05D007070 2.7e-36 155.2 102 81.4
THA.LOC104799405 Tarenaya hassleriana HOM05D005811 ORTHO05D007070 5.5e-26 120.9 102 69.6
Carub.0005s1331 Capsella rubella HOM05D005811 ORTHO05D007070 4.0e-24 114.8 109 63.3
AL5G26310 Arabidopsis lyrata HOM05D005811 ORTHO05D007070 2.6e-23 112.1 99 65.7
AT3G47070 Arabidopsis thaliana HOM05D005811 ORTHO05D007070 2.6e-23 112.1 98 68.4
BcaC01g01857 Brassica carinata HOM05D005811 ORTHO05D007070 9.8e-23 110.2 108 63.9
BcaC01g01858 Brassica carinata HOM05D005811 ORTHO05D007070 9.8e-23 110.2 108 63.9
A06p20460 Brassica napus HOM05D005811 ORTHO05D007070 9.8e-23 110.2 108 64.8
BraA06t25121Z Brassica rapa HOM05D005811 ORTHO05D007070 9.8e-23 110.2 108 64.8
Aa31LG4G15980 Aethionema arabicum HOM05D005811 ORTHO05D007070 1.7e-22 109.4 109 64.2
C03p71300 Brassica napus HOM05D005811 ORTHO05D007070 2.2e-22 109.0 108 63.9
BolC3t19415H Brassica oleracea HOM05D005811 ORTHO05D007070 2.2e-22 109.0 108 63.9
A06p27110 Brassica napus HOM05D005811 ORTHO05D007070 2.8e-22 108.6 109 63.3
BraA06t25647Z Brassica rapa HOM05D005811 ORTHO05D007070 2.8e-22 108.6 109 63.3
TPR.G13272 Trifolium pratense HOM05D005811 ORTHO05D007070 6.3e-22 107.5 101 54.5
BcaC01g02249 Brassica carinata HOM05D005811 ORTHO05D007070 3.1e-21 105.1 109 61.5
BolC3t19011H Brassica oleracea HOM05D005811 ORTHO05D007070 3.1e-21 105.1 109 61.5
BNapus_Darmor_BZH_scaffold_82p00020 Brassica napus HOM05D005811 ORTHO05D007070 7.0e-21 104.0 109 60.6
Thhalv10010831m.g Eutrema salsugineum HOM05D005811 ORTHO05D007070 9.2e-21 103.6 120 58.3
Sp5g14660 Schrenkiella parvula HOM05D005811 ORTHO05D007070 1.6e-20 102.8 129 53.5
BcaB01g00949 Brassica carinata HOM05D005811 ORTHO05D007070 2.0e-20 102.4 108 61.1
BcaB02g10703 Brassica carinata HOM05D005811 ORTHO05D007070 2.9e-19 98.6 103 59.2
Lj6g0027141 Lotus japonicus HOM05D005811 ORTHO05D007070 2.9e-19 98.6 103 56.3
Duzib168G1366 Durio zibethinus HOM05D005811 ORTHO05D007070 1.1e-18 96.7 103 56.3
Carub.0008s1950 Capsella rubella HOM05D005811 ORTHO05D007070 2.5e-18 95.5 61 85.2
Thecc.09G304900 Theobroma cacao HOM05D005811 ORTHO05D007070 4.3e-18 94.7 100 53.0
Glyma.18G065900 Glycine max HOM05D005811 ORTHO05D007070 5.6e-18 94.4 101 57.4
Duzib150G1392 Durio zibethinus HOM05D005811 ORTHO05D007070 1.6e-17 92.8 101 54.5
Sc06g0008440 Simmondsia chinensis HOM05D005811 ORTHO05D007070 2.1e-17 92.4 101 55.4
Duzib170G0110 Durio zibethinus HOM05D005811 ORTHO05D007070 2.8e-17 92.0 100 55.0
Cpa.g.sc112.49 Carica papaya HOM05D005811 ORTHO05D007070 4.7e-17 91.3 102 55.9
Phvul.006G065100 Phaseolus vulgaris HOM05D005811 ORTHO05D007070 1.0e-16 90.1 101 55.4
Sabra16G0151600 Salix brachista HOM05D005811 ORTHO05D007070 1.0e-16 90.1 99 54.5
Medtr5g069990 Medicago truncatula HOM05D005811 ORTHO05D007070 1.4e-16 89.7 106 51.9
Sabra09G0031000 Salix brachista HOM05D005811 ORTHO05D007070 1.4e-16 89.7 99 53.5
Gohir.A03G049700 Gossypium hirsutum HOM05D005811 ORTHO05D007070 1.8e-16 89.4 99 50.5
Gohir.D03G117600 Gossypium hirsutum HOM05D005811 ORTHO05D007070 1.8e-16 89.4 100 50.0
Gorai.003G124000 Gossypium raimondii HOM05D005811 ORTHO05D007070 1.8e-16 89.4 100 50.0
VMungo0540G1301 Vigna mungo HOM05D005811 ORTHO05D007070 1.8e-16 89.4 102 56.9
Ciclev10029657m.g Citrus clementina HOM05D005811 ORTHO05D007070 5.2e-16 87.8 105 51.4
Potri.001G249600 Populus trichocarpa HOM05D005811 ORTHO05D007070 5.2e-16 87.8 99 53.5
Lalb_Chr04g0252281 Lupinus albus HOM05D005811 ORTHO05D007070 8.9e-16 87.0 102 51.0
Gohir.A05G089600 Gossypium hirsutum HOM05D005811 ORTHO05D007070 1.5e-15 86.3 104 52.9
LjContig00155g0018843 Lotus japonicus HOM05D005811 ORTHO05D007070 1.5e-15 86.3 101 53.5
MELO3C025865.2 Cucumis melo HOM05D005811 ORTHO05D007070 2.0e-15 85.9 100 52.0
Gorai.009G093000 Gossypium raimondii HOM05D005811 ORTHO05D007070 2.0e-15 85.9 104 52.9
Ah.15g099770 Amaranthus hybridus HOM05D005811 ORTHO05D007070 3.4e-15 85.1 106 50.9
Gohir.D05G090500 Gossypium hirsutum HOM05D005811 ORTHO05D007070 5.8e-15 84.3 104 51.0
TAR369G0215 Trochodendron aralioides HOM05D005811 ORTHO05D007070 5.8e-15 84.3 100 49.0
Haze_24267 Corylus avellana HOM05D005811 ORTHO05D007070 7.5e-15 84.0 100 49.0
Cfa011662 Carpinus fangiana HOM05D005811 ORTHO05D007070 9.8e-15 83.6 100 50.0
Psat2g059240 Pisum sativum HOM05D005811 ORTHO05D007070 1.3e-14 83.2 104 51.0
PGR102G1689 Punica granatum HOM05D005811 ORTHO05D007070 1.3e-14 83.2 99 50.5
Ca_05589_v3 Cicer arietinum L. HOM05D005811 ORTHO05D007070 2.2e-14 82.4 103 52.4
TWI75G0861 Tripterygium wilfordii HOM05D005811 ORTHO05D007070 2.9e-14 82.0 101 53.5
CsaV3_6G016350 Cucumis sativus L. HOM05D005811 ORTHO05D007070 3.7e-14 81.6 101 50.5
CiPaw.13G080400 Carya illinoinensis HOM05D005811 ORTHO05D007070 4.9e-14 81.3 99 54.5
Lalb_Chr04g0252321 Lupinus albus HOM05D005811 ORTHO05D007070 4.9e-14 81.3 103 50.5
MSTRG.18574 Avicennia marina HOM05D005811 ORTHO05D007070 6.4e-14 80.9 91 53.8
MBI06_g39483_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 6.4e-14 80.9 103 50.5
MBI06_g42850_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 6.4e-14 80.9 103 50.5
Manes.02G121312 Manihot esculenta HOM05D005811 ORTHO05D007070 8.3e-14 80.5 105 48.6
ClCG02G019670 Citrullus lanatus HOM05D005811 ORTHO05D007070 2.4e-13 79.0 101 50.5
AUR62001678 Chenopodium quinoa HOM05D005811 ORTHO05D007070 5.4e-13 77.8 106 49.1
Glyma.11G176000 Glycine max HOM05D005811 ORTHO05D007070 7.0e-13 77.4 101 50.5
Sed0022374 Sechium edule HOM05D005811 ORTHO05D007070 9.2e-13 77.0 100 51.0
AUR62020102 Chenopodium quinoa HOM05D005811 ORTHO05D007070 1.6e-12 76.3 106 48.1
Prupe.6G060300 Prunus persica HOM05D005811 ORTHO05D007070 1.6e-12 76.3 105 48.6
Hund04884 Selenicereus undatus HOM05D004319 ORTHO05D007070 2.7e-12 75.5 87 54.0
MD11G1079700 Malus domestica HOM05D005811 ORTHO05D007070 4.6e-12 74.7 105 46.7
Nitab4.5_0000010g0190 Nicotiana tabacum HOM05D005811 ORTHO05D007070 4.6e-12 74.7 78 56.4
Solyc06g076790.1 Solanum lycopersicum HOM05D005811 ORTHO05D007070 4.6e-12 74.7 88 52.3
CANSAT54G2446 Cannabis sativa HOM05D005811 ORTHO05D007070 6.0e-12 74.3 99 48.5
Manes.01G163700 Manihot esculenta HOM05D005811 ORTHO05D007070 6.0e-12 74.3 103 48.5
Nn2g11406 Nelumbo nucifera HOM05D005811 ORTHO05D007070 1.0e-11 73.6 100 47.0
PGSC0003DMG400030440 Solanum tuberosum HOM05D005811 ORTHO05D007070 1.0e-11 73.6 73 54.8
Nitab4.5_0004144g0020 Nicotiana tabacum HOM05D005811 ORTHO05D007070 2.3e-11 72.4 89 51.7
Sed0014350 Sechium edule HOM05D005811 ORTHO05D007070 2.3e-11 72.4 100 50.0
CAN.G394.109 Capsicum annuum HOM05D005811 ORTHO05D007070 3.9e-11 71.6 95 50.5
Nitab4.5_0000102g0070 Nicotiana tabacum HOM05D005811 ORTHO05D007070 8.6e-11 70.5 97 49.5
MD03G1073700 Malus domestica HOM05D005811 ORTHO05D007070 1.1e-10 70.1 101 45.5
Peaxi162Scf01058g00001 Petunia axillaris HOM05D005811 ORTHO05D007070 1.5e-10 69.7 74 59.5
EL10Ac7g16131 Beta vulgaris HOM05D005811 ORTHO05D007070 1.9e-10 69.3 106 47.2
arahy.Tifrunner.gnm1.ann1.8DRC0W Arachis hypogaea HOM05D005811 ORTHO05D007070 2.5e-10 68.9 101 45.5
arahy.Tifrunner.gnm1.ann1.AMG8UC Arachis hypogaea HOM05D005811 ORTHO05D007070 2.5e-10 68.9 101 45.5
Nn2g13640 Nelumbo nucifera HOM05D005811 ORTHO05D007070 2.5e-10 68.9 100 44.0
PGSC0003DMG400004165 Solanum tuberosum HOM05D005811 ORTHO05D007070 2.5e-10 68.9 90 51.1
ATR0618G101 Amborella trichopoda HOM05D005811 ORTHO05D007070 3.3e-10 68.6 103 44.7
MBI14_g04429_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 2.1e-09 65.9 101 44.6
Dinv28620 Davidia involucrata HOM05D005811 ORTHO05D007070 4.7e-09 64.7 96 41.7
unitig_746.g26735 Utricularia gibba HOM05D005811 ORTHO05D007070 8.0e-09 63.9 72 52.8
Actinidia34450 Actinidia chinensis HOM05D000731 ORTHO05D003068 1.1e-08 63.5 104 44.2
CiPaw.14G060800 Carya illinoinensis HOM05D005811 ORTHO05D007070 1.4e-08 63.2 101 44.6
TPR.G24035 Trifolium pratense HOM05D005811 ORTHO05D007070 1.4e-08 63.2 103 43.7
Potri.009G043600 Populus trichocarpa HOM05D005811 ORTHO05D007070 1.8e-08 62.8 99 41.4
Medtr3g462990 Medicago truncatula HOM05D005811 ORTHO05D007070 4.0e-08 61.6 63 49.2
QL01p037422 Quercus lobata HOM05D005811 ORTHO05D007070 4.0e-08 61.6 99 41.4
Ca_14913_v3 Cicer arietinum L. HOM05D005811 ORTHO05D007070 8.9e-08 60.5 63 54.0
DCAR_018965 Daucus carota HOM05D005811 ORTHO05D007070 1.2e-07 60.1 110 40.9
Migut.D02091 Erythranthe guttata HOM05D005811 ORTHO05D007070 2.0e-07 59.3 112 42.0
SGA_v2.0_scaffold443G51693 Striga asiatica HOM05D005811 ORTHO05D007070 5.8e-07 57.8 43 62.8
CAN.G780.4 Capsicum annuum HOM05D005811 ORTHO05D007070 9.8e-07 57.0 70 50.0
Aqoxy2G00950 Aquilegia oxysepala HOM05D005811 ORTHO05D007070 1.3e-06 56.6 61 49.2
CDE02G0229 Ceratophyllum demersum HOM05D005811 ORTHO05D007070 1.3e-06 56.6 76 48.7
RcHm_v2.0_Chr5g0068741 Rosa chinensis HOM05D005811 ORTHO05D007070 1.3e-06 56.6 107 44.9
PSO339G4375 Papaver somniferum HOM05D005811 ORTHO05D007070 3.7e-06 55.1 100 38.0
unitig_899.g15251 Utricularia gibba HOM05D005811 ORTHO05D007070 8.3e-06 53.9 89 42.7
HPP92_012634 Vanilla planifolia HOM05D005811 ORTHO05D007070 8.3e-06 53.9 106 39.6


User provided reference genes

Program Settings