Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 3.7e-166 588.2 306 100.0
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 1.6e-81 307.0 331 59.5
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 1.2e-71 274.2 376 51.3
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 3.2e-69 266.2 395 48.4
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 2.1e-68 263.5 396 47.5
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 6.0e-68 261.9 319 54.5
BraA03t10548Z Brassica rapa HOM05D012436 ORTHO05D003476 6.7e-67 258.5 402 47.3
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 1.3e-62 244.2 459 41.6
BcaB01g04480 Brassica carinata HOM05D012436 ORTHO05D003476 2.5e-61 240.0 391 45.0
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 3.1e-56 223.0 309 52.4
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 2.5e-53 213.4 418 41.6
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 2.2e-49 200.3 409 39.9
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 1.4e-27 127.9 321 36.8
BcaB01g04545 Brassica carinata HOM05D012436 ORTHO05D003476 9.1e-16 88.6 204 38.7
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 1.0e-14 85.1 203 33.5
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 1.1e-13 81.6 121 38.0
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 2.5e-13 80.5 110 44.5
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 3.3e-13 80.1 136 36.8
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 1.2e-12 78.2 130 36.2
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 1.6e-12 77.8 93 45.2
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 2.8e-12 77.0 77 48.1
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 3.6e-12 76.6 330 26.4
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 8.0e-12 75.5 80 47.5
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 1.4e-11 74.7 307 27.4
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 2.3e-11 73.9 290 27.6
Sopen03g029780 Solanum pennellii HOM05D008057 ORTHO05D003476 2.3e-11 73.9 102 40.2
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 2.3e-11 73.9 231 28.6
VMungo0464G0225 Vigna mungo HOM05D008057 ORTHO05D003476 2.3e-11 73.9 62 54.8
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 2.3e-11 73.9 79 46.8
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 3.0e-11 73.6 282 27.3
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 6.8e-11 72.4 296 27.7
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 6.8e-11 72.4 279 26.2
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 8.9e-11 72.0 90 38.9
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 1.2e-10 71.6 58 58.6
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 1.2e-10 71.6 307 25.1
Hund06726 Selenicereus undatus HOM05D008057 ORTHO05D003476 1.5e-10 71.2 90 44.4
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 2.0e-10 70.9 62 53.2
Phvul.004G136200 Phaseolus vulgaris HOM05D008057 ORTHO05D003476 2.6e-10 70.5 82 41.5
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 4.4e-10 69.7 114 42.1
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 4.4e-10 69.7 136 35.3
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 5.7e-10 69.3 259 27.0
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 7.5e-10 68.9 62 50.0
arahy.Tifrunner.gnm1.ann1.1W7ASM Arachis hypogaea HOM05D008057 ORTHO05D003476 9.8e-10 68.6 62 50.0
arahy.Tifrunner.gnm1.ann1.RQNS35 Arachis hypogaea HOM05D008057 ORTHO05D003476 9.8e-10 68.6 62 50.0
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 1.3e-09 68.2 136 34.6
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 1.7e-09 67.8 103 34.0
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 2.2e-09 67.4 54 53.7
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 2.2e-09 67.4 334 24.3
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 2.2e-09 67.4 315 25.4
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 2.9e-09 67.0 299 26.1
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 2.9e-09 67.0 302 26.5
Prupe.8G056400 Prunus persica HOM05D015681 ORTHO05D003476 2.9e-09 67.0 101 40.6
RcHm_v2.0_Chr7g0218101 Rosa chinensis HOM05D015681 ORTHO05D003476 2.9e-09 67.0 52 59.6
TAR629G2050 Trochodendron aralioides HOM05D008057 ORTHO05D003476 2.9e-09 67.0 307 27.4
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 3.7e-09 66.6 191 28.3
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 3.7e-09 66.6 75 45.3
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 3.7e-09 66.6 50 56.0
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 4.9e-09 66.2 278 26.3
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 4.9e-09 66.2 72 45.8
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 4.9e-09 66.2 72 43.1
Eucgr.K02337 Eucalyptus grandis HOM05D008057 ORTHO05D003476 4.9e-09 66.2 302 26.2
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 4.9e-09 66.2 54 53.7
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 6.3e-09 65.9 75 44.0
FAN08G2522 Fragaria x ananassa HOM05D015681 ORTHO05D003476 6.3e-09 65.9 52 57.7
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 6.3e-09 65.9 324 26.2
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 6.3e-09 65.9 75 45.3
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 8.3e-09 65.5 329 25.5
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 8.3e-09 65.5 81 38.3
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 8.3e-09 65.5 317 26.2
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 8.3e-09 65.5 103 37.9
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 1.1e-08 65.1 72 43.1
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 1.4e-08 64.7 63 46.0
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 1.4e-08 64.7 54 51.9
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 1.4e-08 64.7 75 41.3
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 1.4e-08 64.7 54 51.9
Sed0002498 Sechium edule HOM05D008057 ORTHO05D003476 1.4e-08 64.7 72 44.4
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 1.8e-08 64.3 171 31.0
DCAR_014755 Daucus carota HOM05D008057 ORTHO05D003476 1.8e-08 64.3 163 31.3
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 1.8e-08 64.3 72 44.4
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 1.8e-08 64.3 220 30.0
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 2.4e-08 63.9 322 28.3
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 2.4e-08 63.9 54 48.1
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 3.2e-08 63.5 72 38.9
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 3.2e-08 63.5 63 42.9
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 3.2e-08 63.5 54 50.0
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 3.2e-08 63.5 88 38.6
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 4.1e-08 63.2 54 48.1
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 4.1e-08 63.2 54 50.0
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 4.1e-08 63.2 72 44.4
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 5.4e-08 62.8 63 44.4
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 5.4e-08 62.8 271 28.0
Glyma.09G160700 Glycine max HOM05D008057 ORTHO05D003476 5.4e-08 62.8 213 28.2
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 5.4e-08 62.8 63 42.9
Os02g0638000 Oryza sativa ssp. japonica HOM05D008057 ORTHO05D003476 5.4e-08 62.8 298 26.5
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 5.4e-08 62.8 83 45.8
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 7.0e-08 62.4 119 33.6
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 7.0e-08 62.4 96 37.5
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 7.0e-08 62.4 150 30.0
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 7.0e-08 62.4 72 40.3
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 7.0e-08 62.4 54 50.0
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 7.0e-08 62.4 134 32.1
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 7.0e-08 62.4 97 37.1
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 7.0e-08 62.4 163 28.2
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 7.0e-08 62.4 105 33.3
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 7.0e-08 62.4 54 50.0
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 9.2e-08 62.0 153 29.4
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 9.2e-08 62.0 63 46.0
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 9.2e-08 62.0 54 48.1
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 9.2e-08 62.0 169 30.8
Sc12g0007990 Simmondsia chinensis HOM05D008057 ORTHO05D003476 9.2e-08 62.0 48 58.3
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 9.2e-08 62.0 146 29.5
HPP92_025600 Vanilla planifolia HOM05D061565 ORTHO05D003476 9.2e-08 62.0 97 34.0
AagrBONN_evm.TU.Sc2ySwM_369.432 Anthoceros agrestis HOM05D008307 ORTHO05D010374 1.2e-07 61.6 55 54.5
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 1.2e-07 61.6 88 37.5
SMO165G0083 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 1.2e-07 61.6 70 44.3
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 1.2e-07 61.6 218 26.1
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 1.6e-07 61.2 50 50.0
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 1.6e-07 61.2 137 30.7
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 2.0e-07 60.8 77 45.5
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 2.0e-07 60.8 54 46.3
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 2.0e-07 60.8 54 48.1
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 2.0e-07 60.8 235 26.0
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 2.0e-07 60.8 311 27.3
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 2.0e-07 60.8 72 41.7
SGA_v2.0_scaffold28G11776 Striga asiatica HOM05D008057 ORTHO05D003476 2.0e-07 60.8 163 28.8
Zm00001eb248340 Zea mays HOM05D046263 ORTHO05D003476 2.0e-07 60.8 64 42.2
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 2.7e-07 60.5 202 30.7
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 2.7e-07 60.5 94 35.1
PSO782G0732 Papaver somniferum HOM05D045975 ORTHO05D003476 2.7e-07 60.5 140 26.4
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 3.5e-07 60.1 157 31.2
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 4.6e-07 59.7 81 35.8
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 4.6e-07 59.7 243 27.6
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 4.6e-07 59.7 246 25.2
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 4.6e-07 59.7 54 46.3
vmacro12841 Vaccinium macrocarpon HOM05D008057 ORTHO05D003476 4.6e-07 59.7 51 49.0
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 5.9e-07 59.3 113 32.7
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 5.9e-07 59.3 74 33.8
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 5.9e-07 59.3 74 33.8
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 5.9e-07 59.3 237 28.3
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 5.9e-07 59.3 78 41.0
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 7.8e-07 58.9 54 40.7
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 7.8e-07 58.9 207 28.5
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 7.8e-07 58.9 178 28.1
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 7.8e-07 58.9 54 40.7
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 7.8e-07 58.9 249 26.5
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 7.8e-07 58.9 54 40.7
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 7.8e-07 58.9 160 30.6
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 1.0e-06 58.5 143 30.1
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 1.0e-06 58.5 215 26.0
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 1.3e-06 58.2 210 23.8
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 1.3e-06 58.2 72 40.3
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.3e-06 58.2 72 40.3
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.3e-06 58.2 72 40.3
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 1.3e-06 58.2 137 31.4
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 1.7e-06 57.8 213 29.1
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 2.3e-06 57.4 207 28.5
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.3e-06 57.4 72 40.3
PGSC0003DMG401015209 Solanum tuberosum HOM05D008057 ORTHO05D003476 2.3e-06 57.4 245 25.7
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 2.9e-06 57.0 104 33.7
Solyc03g019840.4 Solanum lycopersicum HOM05D008057 ORTHO05D003476 2.9e-06 57.0 232 28.9
MD10G1047400 Malus domestica HOM05D015681 ORTHO05D003476 3.9e-06 56.6 302 22.2
PSO063G6649 Papaver somniferum HOM05D045975 ORTHO05D003476 3.9e-06 56.6 140 26.4
EL10Ac9g22929 Beta vulgaris HOM05D008057 ORTHO05D003476 5.0e-06 56.2 330 25.8
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 5.0e-06 56.2 284 24.6
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 5.0e-06 56.2 229 24.9
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 6.6e-06 55.8 215 26.5
unitig_746.g26880 Utricularia gibba HOM05D008057 ORTHO05D003476 6.6e-06 55.8 286 27.3
Ca_25286_v3 Cicer arietinum L. HOM05D008057 ORTHO05D003476 8.6e-06 55.5 41 58.5
HanXRQChr08g0226101 Helianthus annuus HOM05D008057 ORTHO05D003476 8.6e-06 55.5 293 25.3
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 8.6e-06 55.5 257 26.5
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 8.6e-06 55.5 92 32.6


User provided reference genes

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