Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 4.3e-195 684.5 353 100.0
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 4.0e-180 634.8 355 91.8
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 2.6e-179 632.1 353 91.2
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 5.7e-179 630.9 355 91.5
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 1.3e-178 629.8 355 91.3
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 1.1e-174 616.7 355 89.9
BcaB05g22395 Brassica carinata HOM05D005260 ORTHO05D006390 5.7e-171 604.4 355 89.0
BolC2t07483H Brassica oleracea HOM05D005260 ORTHO05D006390 1.3e-170 603.2 355 89.0
C02p13690 Brassica napus HOM05D005260 ORTHO05D006390 8.3e-170 600.5 355 88.5
BcaC04g19916 Brassica carinata HOM05D005260 ORTHO05D006390 3.1e-169 598.6 356 87.1
A02p08050 Brassica napus HOM05D005260 ORTHO05D006390 3.1e-169 598.6 355 87.9
BraA10t43614Z Brassica rapa HOM05D005260 ORTHO05D006390 4.1e-169 598.2 356 87.4
BolC9t57839H Brassica oleracea HOM05D005260 ORTHO05D006390 7.0e-169 597.4 356 87.1
BraA02t05877Z Brassica rapa HOM05D005260 ORTHO05D006390 7.0e-169 597.4 355 87.9
C09p49880 Brassica napus HOM05D005260 ORTHO05D006390 9.1e-169 597.0 356 86.5
A10p16150 Brassica napus HOM05D005260 ORTHO05D006390 2.7e-168 595.5 356 87.1
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 8.3e-162 573.9 355 83.9
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 9.5e-134 480.7 354 71.2
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 6.4e-130 468.0 353 70.0
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 6.6e-119 431.4 350 64.9
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 4.6e-112 408.7 390 60.0
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 3.6e-109 399.1 354 61.0
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 2.4e-108 396.4 354 61.0
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 4.0e-108 395.6 352 61.4
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 5.3e-108 395.2 352 62.2
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 5.8e-107 391.7 352 60.8
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 2.9e-106 389.4 355 62.0
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 1.9e-105 386.7 384 57.6
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 4.2e-105 385.6 366 58.5
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 5.5e-105 385.2 371 60.1
Sabra06G0142800 Salix brachista HOM05D005260 ORTHO05D006390 7.1e-105 384.8 356 61.0
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 9.3e-105 384.4 388 56.2
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 4.6e-104 382.1 348 61.2
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 1.3e-103 380.6 357 60.2
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 3.0e-103 379.4 357 60.5
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 3.9e-103 379.0 379 57.5
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 3.9e-103 379.0 379 56.2
Cc06_g15200 Coffea canephora HOM05D005260 ORTHO05D006390 1.1e-102 377.5 376 56.4
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 1.1e-102 377.5 373 58.4
Manes.14G111500 Manihot esculenta HOM05D005260 ORTHO05D006390 1.1e-102 377.5 379 56.7
Lsat_1_v5_gn_6_38260 Lactuca sativa HOM05D005260 ORTHO05D006390 2.5e-102 376.3 377 56.2
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 4.3e-102 375.6 373 58.2
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 4.3e-102 375.6 358 59.2
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 4.3e-102 375.6 368 58.4
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 7.4e-102 374.8 381 57.0
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 7.4e-102 374.8 376 57.7
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 7.4e-102 374.8 372 59.1
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 4.8e-101 372.1 374 57.5
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 8.2e-101 371.3 373 59.8
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 8.2e-101 371.3 370 57.3
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 8.2e-101 371.3 378 55.8
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 1.1e-100 370.9 373 59.8
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.1e-100 370.9 389 54.8
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.4e-100 370.5 388 54.1
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 4.0e-100 369.0 388 54.1
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 6.9e-100 368.2 382 56.5
Sabra18G0092700 Salix brachista HOM05D005260 ORTHO05D006390 6.9e-100 368.2 377 55.4
VMungo1215G1942 Vigna mungo HOM05D005260 ORTHO05D006390 6.9e-100 368.2 370 56.8
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 1.2e-99 367.5 378 54.8
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 1.2e-99 367.5 380 56.8
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 3.4e-99 365.9 353 58.6
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 3.4e-99 365.9 378 54.5
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 5.8e-99 365.2 362 58.6
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 1.0e-98 364.4 387 55.3
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 1.3e-98 364.0 376 56.6
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 1.7e-98 363.6 379 56.2
Peaxi162Scf00347g00088 Petunia axillaris HOM05D005260 ORTHO05D006390 2.2e-98 363.2 396 53.8
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 4.9e-98 362.1 379 54.4
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 4.9e-98 362.1 387 53.7
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 1.4e-97 360.5 387 55.3
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 1.9e-97 360.1 376 55.3
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 2.5e-97 359.8 384 54.2
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 2.5e-97 359.8 356 57.6
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 2.5e-97 359.8 387 53.5
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 3.2e-97 359.4 355 57.2
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 4.2e-97 359.0 373 56.3
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 5.5e-97 358.6 310 61.6
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 9.3e-97 357.8 384 56.2
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 2.1e-96 356.7 374 56.1
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 2.7e-96 356.3 375 53.9
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 2.7e-96 356.3 387 53.2
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 4.6e-96 355.5 387 53.0
Sc18g0000130 Simmondsia chinensis HOM05D005260 ORTHO05D006390 2.3e-95 353.2 389 53.2
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 2.5e-94 349.7 378 55.0
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 5.7e-94 348.6 369 55.6
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 1.3e-93 347.4 369 55.6
MSTRG.6120 Avicennia marina HOM05D005260 ORTHO05D006390 1.6e-93 347.1 356 55.6
SalBow1G8640 Salvia bowleyana HOM05D005260 ORTHO05D006390 2.1e-93 346.7 350 56.3
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 6.3e-93 345.1 363 52.9
Lj7P455T24 Lonicera japonica HOM05D005260 ORTHO05D006390 1.1e-92 344.4 306 59.5
Migut.J01331 Erythranthe guttata HOM05D005260 ORTHO05D006390 2.4e-92 343.2 354 55.6
HanXRQChr13g0397631 Helianthus annuus HOM05D005260 ORTHO05D006390 3.1e-92 342.8 381 52.0
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 6.9e-92 341.7 373 53.9
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 9.0e-92 341.3 351 57.0
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 4.5e-91 339.0 360 56.7
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 7.6e-91 338.2 347 54.8
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 1.0e-90 337.8 388 50.8
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 1.0e-90 337.8 372 54.8
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 1.0e-87 327.8 351 55.3
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 1.8e-87 327.0 373 52.5
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 9.7e-86 321.2 353 52.1
PSO017G5909 Papaver somniferum HOM05D005260 ORTHO05D006390 1.6e-85 320.5 397 50.4
PSO170G6608 Papaver somniferum HOM05D005260 ORTHO05D006390 6.3e-85 318.5 393 51.1
Pp3c14_10930 Physcomitrium patens HOM05D005260 ORTHO05D006390 2.4e-84 316.6 366 49.5
SMO307G0072 Selaginella moellendorffii HOM05D005260 ORTHO05D006390 1.2e-83 314.3 299 56.9
Aqoxy3G00834 Aquilegia oxysepala HOM05D005260 ORTHO05D006390 7.7e-83 311.6 364 51.9
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 1.7e-82 310.5 316 54.1
SEGI_13576 Sequoiadendron giganteum HOM05D005260 ORTHO05D006390 4.2e-81 305.8 351 51.6
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 2.1e-80 303.5 281 59.1
Mapoly0043s0023 Marchantia polymorpha HOM05D005260 ORTHO05D006390 5.1e-79 298.9 356 50.6
SGA_v2.0_scaffold45G17044 Striga asiatica HOM05D005260 ORTHO05D006390 2.6e-78 296.6 348 52.3
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 5.3e-76 288.9 301 53.5
Gohir.D09G249000 Gossypium hirsutum HOM05D005260 ORTHO05D006390 5.9e-75 285.4 262 60.3
CiPaw.16G114800 Carya illinoinensis HOM05D005260 ORTHO05D006390 1.8e-68 263.8 280 53.6
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 8.5e-66 255.0 332 50.3
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 8.5e-66 255.0 332 50.3
AUR62021106 Chenopodium quinoa HOM05D005260 ORTHO05D006390 1.1e-65 254.6 263 53.2
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 8.0e-64 248.4 357 40.9
Actinidia38337 Actinidia chinensis HOM05D005260 ORTHO05D006390 3.0e-63 246.5 169 69.8
Gohir.D07G030400 Gossypium hirsutum HOM05D005260 ORTHO05D006390 3.7e-61 239.6 268 54.5
Gorai.001G031600 Gossypium raimondii HOM05D005260 ORTHO05D006390 8.2e-61 238.4 268 54.1
unitig_0.g2819 Utricularia gibba HOM05D005260 ORTHO05D006390 2.6e-46 190.3 200 53.5
Cre03.g150650 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 7.8e-43 178.7 313 38.7
HPP92_018747 Vanilla planifolia HOM05D005260 ORTHO05D006390 7.3e-41 172.2 185 54.1
Lalb_Chr12g0198621 Lupinus albus HOM05D005260 ORTHO05D006390 1.8e-39 167.5 203 49.3
PRCOL_00003864 Prasinoderma coloniale HOM05D005260 ORTHO05D006390 7.5e-30 135.6 284 33.5
AagrBONN_evm.TU.Sc2ySwM_344.4069 Anthoceros agrestis HOM05D005260 ORTHO05D006390 4.9e-29 132.9 163 49.7
HanXRQChr09g0262911 Helianthus annuus HOM05D005260 ORTHO05D006390 3.2e-28 130.2 84 69.0
CDE02G0414 Ceratophyllum demersum HOM05D005260 ORTHO05D006390 1.1e-23 115.2 307 33.2
HPP92_018748 Vanilla planifolia HOM05D005260 ORTHO05D006390 5.2e-23 112.8 128 46.9
MELO3C004727.2 Cucumis melo HOM05D005260 ORTHO05D006390 4.4e-22 109.8 83 66.3
Atru.chr13.1961 Acer truncatum HOM05D005260 ORTHO05D006390 1.3e-21 108.2 143 51.7
BolC3t13905H Brassica oleracea HOM05D005260 ORTHO05D006390 1.7e-18 97.8 57 89.5
TAR625G0635 Trochodendron aralioides HOM05D005260 ORTHO05D006390 1.5e-17 94.7 140 50.0
ATR0579G027 Amborella trichopoda HOM05D005260 ORTHO05D006390 3.3e-17 93.6 119 43.7
Zm00001eb158280 Zea mays HOM05D005260 ORTHO05D006390 1.6e-16 91.3 91 53.8
MCO05G557 Micromonas commoda HOM05D005260 ORTHO05D006390 8.7e-10 68.9 247 26.7
Cfa026666 Carpinus fangiana HOM05D005260 ORTHO05D006390 1.9e-09 67.8 279 28.3
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 2.1e-08 64.3 41 68.3
ClCG06G012260 Citrullus lanatus HOM05D005260 ORTHO05D006390 2.4e-07 60.8 53 54.7
Cre17.g715950 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 2.6e-06 57.4 166 27.7


User provided reference genes

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