Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 0.0e+00 1161.7 643 100.0
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 0.0e+00 1102.0 645 91.8
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 0.0e+00 1097.4 652 90.5
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 0.0e+00 1096.3 649 90.6
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1095.1 643 91.9
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 0.0e+00 1091.3 644 92.1
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 0.0e+00 1090.1 643 88.0
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 0.0e+00 1090.1 647 91.5
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 0.0e+00 1084.7 643 91.3
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1081.2 644 91.3
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1081.2 646 91.0
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 0.0e+00 1080.5 645 91.2
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1079.7 643 91.0
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 4.0e-311 1070.8 645 87.8
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 8.8e-311 1069.7 648 89.2
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 3.3e-310 1067.8 650 88.9
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 2.6e-307 1058.1 646 87.8
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 2.5e-305 1051.6 646 85.8
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 7.4e-302 1040.0 648 87.7
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 1.0e-295 1019.6 646 81.3
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 2.0e-294 1015.4 644 82.9
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 6.8e-263 910.6 651 72.2
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 8.3e-261 903.7 651 71.4
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 2.4e-260 902.1 654 72.0
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 1.6e-259 899.4 658 72.0
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 2.0e-259 899.0 657 71.7
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 6.0e-259 897.5 628 76.6
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 1.7e-258 896.0 649 71.0
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 4.3e-257 891.3 653 69.8
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 4.7e-256 887.9 650 71.7
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 1.1e-255 886.7 657 72.9
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 1.8e-255 885.9 650 71.8
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 5.2e-255 884.4 650 69.8
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 5.2e-255 884.4 650 69.8
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 6.8e-255 884.0 655 70.1
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 1.5e-254 882.9 653 70.3
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 2.6e-254 882.1 646 70.9
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 5.8e-254 880.9 657 72.3
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 1.3e-253 879.8 655 69.6
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 3.7e-253 878.2 648 69.0
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 6.4e-253 877.5 660 71.2
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 8.3e-253 877.1 649 70.4
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 1.4e-252 876.3 653 69.2
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 1.9e-252 875.9 649 70.3
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 4.1e-252 874.8 649 70.3
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 2.1e-251 872.5 655 69.2
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 2.1e-251 872.5 649 71.2
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 3.5e-251 871.7 651 69.3
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 4.6e-251 871.3 653 70.0
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 4.6e-251 871.3 630 71.7
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 7.8e-251 870.5 651 69.0
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 2.3e-250 869.0 655 69.2
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 1.1e-249 866.7 653 71.1
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 1.5e-249 866.3 649 68.7
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 1.6e-248 862.8 650 68.8
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 2.8e-248 862.1 643 70.3
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 4.7e-248 861.3 651 68.8
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 4.9e-245 851.3 645 70.4
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 8.3e-245 850.5 655 68.5
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 8.3e-245 850.5 651 67.9
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 8.3e-245 850.5 648 68.4
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 5.4e-244 847.8 640 71.2
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 1.2e-243 846.7 657 67.3
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 2.3e-242 842.4 650 68.9
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 2.3e-242 842.4 643 69.5
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 1.2e-240 836.6 635 69.0
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 2.8e-240 835.5 654 66.5
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 3.6e-240 835.1 647 68.0
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 3.6e-240 835.1 655 67.5
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 9.9e-238 827.0 653 66.3
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 4.9e-237 824.7 653 67.4
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 8.4e-237 823.9 644 66.9
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 1.1e-236 823.5 578 72.3
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 9.3e-236 820.5 652 66.6
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 1.6e-235 819.7 651 66.8
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 3.5e-235 818.5 650 67.7
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 1.7e-234 816.2 653 67.2
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 8.7e-234 813.9 654 65.4
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 5.6e-233 811.2 654 65.4
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 9.6e-233 810.4 655 65.6
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 2.1e-232 809.3 578 72.1
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 3.6e-232 808.5 650 67.2
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 6.2e-232 807.7 646 64.6
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 1.1e-231 807.0 653 66.9
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 5.3e-231 804.7 654 65.0
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 1.2e-230 803.5 655 65.0
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 1.5e-230 803.1 652 64.7
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 1.5e-230 803.1 652 64.7
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 4.4e-230 801.6 652 64.6
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 2.9e-229 798.9 645 64.0
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 3.8e-229 798.5 631 70.5
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 8.4e-229 797.3 634 67.5
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 8.4e-229 797.3 644 66.3
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 1.1e-228 797.0 654 64.5
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 1.2e-227 793.5 658 67.2
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 1.7e-226 789.6 657 63.9
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 1.5e-225 786.6 655 64.3
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 7.3e-225 784.3 652 63.2
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 7.3e-225 784.3 647 64.5
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 6.2e-224 781.2 643 64.5
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 6.9e-223 777.7 647 64.5
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.9e-220 769.6 656 62.3
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 1.5e-214 750.0 642 64.6
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 4.2e-212 741.9 659 61.2
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.6e-211 740.0 649 60.1
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 5.1e-210 734.9 650 60.8
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 2.8e-208 729.2 653 61.1
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 2.8e-208 729.2 653 61.1
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 8.7e-202 707.6 623 69.2
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 5.9e-198 694.9 652 57.1
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 8.5e-197 691.0 647 58.3
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 4.2e-196 688.7 652 58.9
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.8e-191 673.3 633 59.7
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 5.0e-189 665.2 656 55.2
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 2.2e-184 649.8 548 63.9
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 1.5e-180 637.1 651 56.4
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 4.2e-180 635.6 653 53.9
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 3.0e-178 629.4 646 56.3
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 6.7e-178 628.2 642 56.1
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 5.7e-161 572.0 656 50.2
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 7.0e-151 538.5 550 55.6
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 8.9e-146 521.5 677 45.8
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 3.6e-139 499.6 676 43.2
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 2.3e-125 453.8 681 43.5
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 5.3e-114 416.0 349 62.8
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 2.2e-104 384.0 334 65.0
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 5.7e-92 342.8 243 69.1
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 4.5e-89 333.2 382 48.4
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 2.1e-62 244.6 297 50.2
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 4.2e-47 193.7 559 27.9
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 4.5e-41 173.7 113 77.0
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 7.5e-36 156.4 118 66.9
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 1.7e-27 128.6 139 57.6
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 1.4e-13 82.4 94 48.9
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 2.7e-09 68.2 96 38.5
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 3.0e-08 64.7 44 65.9


User provided reference genes

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