Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g18850 Schrenkiella parvula HOM05D005890 ORTHO05D006717 8.3e-173 610.5 367 100.0
Thhalv10013871m.g Eutrema salsugineum HOM05D005890 ORTHO05D006717 1.2e-123 447.2 374 75.9
BcaB05g22318 Brassica carinata HOM05D005890 ORTHO05D006717 4.8e-104 382.1 374 71.9
BcaC03g14182 Brassica carinata HOM05D005890 ORTHO05D006717 7.7e-102 374.8 405 68.6
C02p14590 Brassica napus HOM05D005890 ORTHO05D006717 7.7e-102 374.8 405 68.6
BolC2t07586H Brassica oleracea HOM05D005890 ORTHO05D006717 7.7e-102 374.8 405 68.6
A02p08710 Brassica napus HOM05D005890 ORTHO05D006717 3.9e-98 362.5 399 67.2
BraA02t05941Z Brassica rapa HOM05D005890 ORTHO05D006717 3.7e-96 355.9 402 66.9
CARHR270890 Cardamine hirsuta HOM05D005890 ORTHO05D006717 1.6e-91 340.5 370 66.5
Aa31LG3G13020 Aethionema arabicum HOM05D005890 ORTHO05D006717 3.9e-90 335.9 391 63.9
BcaC04g20011 Brassica carinata HOM05D005890 ORTHO05D006717 1.6e-86 323.9 344 63.4
BolC9t57729H Brassica oleracea HOM05D005890 ORTHO05D006717 1.1e-84 317.8 344 60.2
C09p48820 Brassica napus HOM05D005890 ORTHO05D006717 1.5e-84 317.4 344 60.2
BcaB08g36002 Brassica carinata HOM05D005890 ORTHO05D006717 2.8e-80 303.1 339 65.2
THA.LOC104817770 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 1.0e-74 284.6 421 54.6
AT5G57120 Arabidopsis thaliana HOM05D005890 ORTHO05D006717 1.9e-68 263.8 335 60.6
THA.LOC104813501 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 1.4e-66 257.7 392 56.9
AL8G33040 Arabidopsis lyrata HOM05D005890 ORTHO05D006717 5.2e-66 255.8 335 62.4
Carub.0008s1762 Capsella rubella HOM05D005890 ORTHO05D006717 2.3e-50 203.8 335 53.4
FAN17G2561 Fragaria x ananassa HOM05D005890 ORTHO05D006717 2.3e-50 203.8 387 42.9
FAN07G1770 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.2e-49 201.4 387 42.6
FAN12G2329 Fragaria x ananassa HOM05D005890 ORTHO05D006717 2.0e-49 200.7 387 42.4
Gorai.012G008900 Gossypium raimondii HOM05D005890 ORTHO05D006717 3.4e-49 199.9 415 48.0
Gohir.A05G408300 Gossypium hirsutum HOM05D005890 ORTHO05D006717 2.2e-48 197.2 415 45.3
Glyma.13G101600 Glycine max HOM05D005890 ORTHO05D006717 1.3e-45 188.0 387 39.3
TWI34G1560 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 6.6e-45 185.7 414 40.3
Lalb_Chr13g0299851 Lupinus albus HOM05D005890 ORTHO05D006717 8.6e-45 185.3 387 43.7
CANSAT01G0113 Cannabis sativa HOM05D005890 ORTHO05D006717 5.6e-44 182.6 414 39.1
VMungo1215G0729 Vigna mungo HOM05D005890 ORTHO05D006717 1.2e-43 181.4 396 38.9
Lj4g0027857 Lotus japonicus HOM05D005890 ORTHO05D006717 6.8e-42 175.6 398 38.2
TWI32G1283 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 1.2e-41 174.9 486 35.4
Atru.BG.17.p Acer truncatum HOM05D005890 ORTHO05D006717 1.5e-41 174.5 360 45.6
Glyma.17G058000 Glycine max HOM05D005890 ORTHO05D006717 2.0e-41 174.1 359 39.0
RcHm_v2.0_Chr4g0398981 Rosa chinensis HOM05D005890 ORTHO05D006717 7.5e-41 172.2 447 35.1
Thecc.09G191500 Theobroma cacao HOM05D005890 ORTHO05D006717 2.9e-40 170.2 471 34.4
Cfa013466 Carpinus fangiana HOM05D005890 ORTHO05D006717 6.4e-40 169.1 484 36.0
CiPaw.07G198700 Carya illinoinensis HOM05D005890 ORTHO05D006717 6.4e-40 169.1 412 36.7
Potri.018G140200 Populus trichocarpa HOM05D005890 ORTHO05D006717 6.4e-40 169.1 463 36.9
Cpa.g.sc115.65 Carica papaya HOM05D005890 ORTHO05D006717 1.9e-39 167.5 174 55.7
Migut.L01872 Erythranthe guttata HOM05D005890 ORTHO05D006717 2.4e-39 167.2 362 44.5
MD16G1246300 Malus domestica HOM05D005890 ORTHO05D006717 2.4e-39 167.2 455 34.3
PGR044G2166 Punica granatum HOM05D005890 ORTHO05D006717 2.4e-39 167.2 473 37.2
C07p10770 Brassica napus HOM05D018474 ORTHO05D027757 3.2e-39 166.8 317 53.0
Potri.006G073100 Populus trichocarpa HOM05D005890 ORTHO05D006717 3.2e-39 166.8 488 36.3
Manes.06G017800 Manihot esculenta HOM05D005890 ORTHO05D006717 4.1e-39 166.4 459 34.4
Phvul.003G140452 Phaseolus vulgaris HOM05D005890 ORTHO05D006717 4.1e-39 166.4 408 38.7
GSVIVG01029286001 Vitis vinifera HOM05D005890 ORTHO05D006717 9.2e-39 165.2 469 35.8
DCAR_018014 Daucus carota HOM05D005890 ORTHO05D006717 1.2e-38 164.9 432 36.6
Duzib170G1164 Durio zibethinus HOM05D005890 ORTHO05D006717 1.6e-38 164.5 513 32.4
BcaC06g35794 Brassica carinata HOM05D018474 ORTHO05D027757 2.1e-38 164.1 308 47.7
BcaC06g35790 Brassica carinata HOM05D018474 ORTHO05D006717 2.7e-38 163.7 267 53.6
Medtr4g127160 Medicago truncatula HOM05D005890 ORTHO05D006717 2.7e-38 163.7 428 34.6
Eucgr.C02214 Eucalyptus grandis HOM05D005890 ORTHO05D006717 4.6e-38 162.9 467 33.0
Nitab4.5_0000028g0410 Nicotiana tabacum HOM05D005890 ORTHO05D006717 4.6e-38 162.9 389 37.8
arahy.Tifrunner.gnm1.ann1.CB00ZF Arachis hypogaea HOM05D005890 ORTHO05D006717 6.0e-38 162.5 407 40.0
Prupe.1G073000 Prunus persica HOM05D005890 ORTHO05D006717 6.0e-38 162.5 444 34.5
AUR62027422 Chenopodium quinoa HOM05D005890 ORTHO05D006717 2.3e-37 160.6 420 38.3
arahy.Tifrunner.gnm1.ann1.V3N0NP Arachis hypogaea HOM05D005890 ORTHO05D006717 3.0e-37 160.2 412 41.3
CsaV3_3G012070 Cucumis sativus L. HOM05D005890 ORTHO05D006717 3.9e-37 159.8 420 37.1
Ah.14g085350 Amaranthus hybridus HOM05D005890 ORTHO05D006717 8.6e-37 158.7 384 37.8
Peaxi162Scf00046g00417 Petunia axillaris HOM05D005890 ORTHO05D006717 8.6e-37 158.7 408 39.7
QL07p048247 Quercus lobata HOM05D005890 ORTHO05D006717 1.1e-36 158.3 480 32.3
ClCG06G013720 Citrullus lanatus HOM05D005890 ORTHO05D006717 1.5e-36 157.9 425 35.5
AUR62031274 Chenopodium quinoa HOM05D005890 ORTHO05D006717 3.3e-36 156.8 375 40.0
Ca_21262_v3 Cicer arietinum L. HOM05D005890 ORTHO05D006717 5.6e-36 156.0 365 39.7
Sabra06G0054500 Salix brachista HOM05D005890 ORTHO05D006717 5.6e-36 156.0 462 37.4
BolC7t41545H Brassica oleracea HOM05D018474 ORTHO05D027757 1.2e-35 154.8 317 54.9
BolC7t41550H Brassica oleracea HOM05D018474 ORTHO05D027757 1.2e-35 154.8 321 53.3
Cc03_g15250 Coffea canephora HOM05D005890 ORTHO05D006717 1.6e-35 154.5 495 32.9
Dinv41195 Davidia involucrata HOM05D005890 ORTHO05D006717 3.6e-35 153.3 170 58.2
EL10Ac8g19296 Beta vulgaris HOM05D005890 ORTHO05D006717 4.7e-35 152.9 422 39.1
MELO3C006422.2 Cucumis melo HOM05D005890 ORTHO05D006717 6.2e-35 152.5 418 35.6
Sed0014693 Sechium edule HOM05D005890 ORTHO05D006717 1.8e-34 151.0 429 36.8
ECA240G0208 Erigeron canadensis HOM05D005890 ORTHO05D006717 3.1e-34 150.2 126 69.0
PGSC0003DMG400019897 Solanum tuberosum HOM05D005890 ORTHO05D006717 3.1e-34 150.2 411 38.4
SGA_v2.0_scaffold392G50652 Striga asiatica HOM05D005890 ORTHO05D006717 3.1e-34 150.2 194 52.1
CSS0049336 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 4.0e-34 149.8 168 55.4
Aqoxy7G02888 Aquilegia oxysepala HOM05D005890 ORTHO05D006717 8.9e-34 148.7 119 70.6
MSTRG.26556 Avicennia marina HOM05D005890 ORTHO05D006717 8.9e-34 148.7 466 32.4
Nitab4.5_0004916g0020 Nicotiana tabacum HOM05D005890 ORTHO05D006717 1.2e-33 148.3 391 41.4
Sopen07g004220 Solanum pennellii HOM05D005890 ORTHO05D006717 1.5e-33 147.9 412 39.3
Oeu063100.1 Olea europaea HOM05D005890 ORTHO05D006717 2.6e-33 147.1 164 56.7
Atru.chr7.926 Acer truncatum HOM05D005890 ORTHO05D006717 4.4e-33 146.4 206 52.4
CDE02G0471 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 5.8e-33 146.0 382 34.3
ATR1098G092 Amborella trichopoda HOM05D005890 ORTHO05D006717 9.9e-33 145.2 116 67.2
Ciclev10008727m.g Citrus clementina HOM05D005890 ORTHO05D006717 9.9e-33 145.2 268 43.7
Zm00001eb136110 Zea mays HOM05D005890 ORTHO05D006717 1.7e-32 144.4 111 68.5
Solyc07g008330.3 Solanum lycopersicum HOM05D005890 ORTHO05D006717 2.9e-32 143.7 410 38.8
TAR637G0001 Trochodendron aralioides HOM05D005890 ORTHO05D006717 4.9e-32 142.9 80 86.2
HanXRQChr03g0065401 Helianthus annuus HOM05D005890 ORTHO05D006717 8.4e-32 142.1 398 33.9
unitig_8.g3553 Utricularia gibba HOM05D005890 ORTHO05D006717 8.4e-32 142.1 404 33.7
Hma1.2p1_0235F.1_g098760 Hydrangea macrophylla HOM05D005890 ORTHO05D006717 5.4e-31 139.4 470 32.1
Lsat_1_v5_gn_5_83860 Lactuca sativa HOM05D005890 ORTHO05D006717 5.4e-31 139.4 349 39.0
Sed0024384 Sechium edule HOM05D005890 ORTHO05D006717 7.1e-31 139.0 387 35.1
CAN.G403.1 Capsicum annuum HOM05D005890 ORTHO05D006717 9.2e-31 138.7 375 36.0
Dinv25461 Davidia involucrata HOM05D005890 ORTHO05D006717 1.6e-30 137.9 328 38.4
HanXRQChr10g0308981 Helianthus annuus HOM05D005890 ORTHO05D006717 1.6e-30 137.9 338 40.5
Os12g0613500 Oryza sativa ssp. japonica HOM05D005890 ORTHO05D006717 2.1e-30 137.5 130 60.0
TPR.G5393 Trifolium pratense HOM05D005890 ORTHO05D006717 2.1e-30 137.5 429 38.9
Psat4g014480 Pisum sativum HOM05D005890 ORTHO05D006717 3.5e-30 136.7 128 59.4
vmacro20806 Vaccinium macrocarpon HOM05D005890 ORTHO05D006717 4.6e-30 136.3 190 47.4
Nn8g40670 Nelumbo nucifera HOM05D005890 ORTHO05D006717 6.0e-30 136.0 129 61.2
HPP92_018699 Vanilla planifolia HOM05D005890 ORTHO05D006717 7.8e-30 135.6 99 70.7
SGA_v2.0_scaffold41G15805 Striga asiatica HOM05D005890 ORTHO05D006717 2.3e-29 134.0 486 29.8
CDE05G3513 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 5.1e-29 132.9 421 30.4
SEGI_20539 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 5.1e-29 132.9 105 66.7
ECA234G0353 Erigeron canadensis HOM05D005890 ORTHO05D006717 1.5e-28 131.3 371 43.1
Actinidia02494 Actinidia chinensis HOM05D005890 ORTHO05D006717 3.3e-28 130.2 498 30.5
Hund24378 Selenicereus undatus HOM05D005890 ORTHO05D006717 9.6e-28 128.6 447 36.2
PSO170G0082 Papaver somniferum HOM05D005890 ORTHO05D006717 1.6e-27 127.9 119 60.5
PSO063G0609 Papaver somniferum HOM05D005890 ORTHO05D006717 2.1e-27 127.5 114 62.3
Rhsim01G0114500 Rhododendron simsii HOM05D005890 ORTHO05D006717 2.8e-27 127.1 511 30.9
COL.COLO4_08570 Corchorus olitorius HOM05D005890 ORTHO05D006717 3.1e-26 123.6 564 28.2
MBI14_g15782_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 6.9e-26 122.5 236 41.5
Mapoly0009s0141 Marchantia polymorpha HOM05D005890 ORTHO05D006717 4.4e-25 119.8 125 51.2
Pp3c3_34440 Physcomitrium patens HOM05D005890 ORTHO05D006717 4.4e-25 119.8 115 54.8
Pp3c3_34441 Physcomitrium patens HOM05D005890 ORTHO05D006717 4.4e-25 119.8 115 54.8
Zm00001eb172010 Zea mays HOM05D005890 ORTHO05D006717 2.2e-24 117.5 126 54.0
Lsat_1_v5_gn_7_55781 Lactuca sativa HOM05D005890 ORTHO05D006717 1.1e-23 115.2 415 36.1
MBI18_g10586_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 7.8e-22 109.0 184 47.3
CBR_g20282 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-21 107.8 81 66.7
FvH4_4g06950 Fragaria vesca HOM05D005890 ORTHO05D006717 6.6e-21 105.9 331 35.0
SEGI_22268 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 1.5e-20 104.8 62 79.0
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 2.5e-20 104.0 120 54.2
AagrBONN_evm.TU.Sc2ySwM_368.973 Anthoceros agrestis HOM05D005890 ORTHO05D006717 9.6e-20 102.1 293 32.8
Gohir.D04G007200 Gossypium hirsutum HOM05D005890 ORTHO05D006717 4.8e-19 99.8 350 40.0
Haze_22044 Corylus avellana HOM05D005890 ORTHO05D006717 9.0e-18 95.5 81 61.7
MD13G1240600 Malus domestica HOM05D005890 ORTHO05D006717 1.1e-12 78.6 401 28.2
BcaC06g35789 Brassica carinata HOM05D018474 ORTHO05D006717 1.9e-12 77.8 74 64.9
Zm00001eb394450 Zea mays HOM05D014690 ORTHO05D006717 1.9e-12 77.8 55 67.3
CSS0049604 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 4.3e-12 76.6 165 38.2
Cre01.g055400 Chlamydomonas reinhardtii HOM05D005890 ORTHO05D006717 7.4e-12 75.9 102 52.0
Cpa.g.c33129.1 Carica papaya HOM05D005890 ORTHO05D006717 2.8e-11 73.9 101 47.5
Sabra18G0114500 Salix brachista HOM05D005890 ORTHO05D006717 1.4e-10 71.6 415 28.0
A10p14440 Brassica napus HOM05D005890 ORTHO05D006717 1.2e-09 68.6 35 91.4
BraA10t43535Z Brassica rapa HOM05D005890 ORTHO05D006717 1.2e-09 68.6 35 91.4
MCO09G065 Micromonas commoda HOM05D005890 ORTHO05D006717 1.5e-09 68.2 89 49.4
CiPaw.08G031700 Carya illinoinensis HOM05D005890 ORTHO05D006717 1.1e-07 62.0 154 33.1
DCAR_029041 Daucus carota HOM05D005890 ORTHO05D006717 5.5e-07 59.7 214 28.5


User provided reference genes

Program Settings