Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g18700 Schrenkiella parvula HOM05D003238 ORTHO05D003571 5.4e-94 347.8 198 100.0
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 6.7e-68 261.2 205 78.0
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 3.3e-67 258.8 199 74.9
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 3.3e-67 258.8 199 74.9
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 4.5e-64 248.4 188 75.0
BcaB01g04436 Brassica carinata HOM05D003238 ORTHO05D003571 5.8e-64 248.1 200 77.5
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 3.8e-63 245.4 199 78.4
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 6.5e-63 244.6 201 77.6
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 6.5e-63 244.6 184 79.3
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 1.1e-62 243.8 178 80.3
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 4.2e-62 241.9 198 72.2
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 2.1e-61 239.6 198 76.3
CARHR270740 Cardamine hirsuta HOM05D003238 ORTHO05D003571 2.3e-60 236.1 206 74.8
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 3.0e-60 235.7 196 77.0
Carub.0008s1748 Capsella rubella HOM05D003238 ORTHO05D003571 2.5e-59 232.6 198 71.7
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 5.7e-59 231.5 193 71.0
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 5.9e-56 221.5 179 70.4
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 3.8e-55 218.8 182 70.9
BolC3t13964H Brassica oleracea HOM05D003238 ORTHO05D003571 1.1e-54 217.2 178 74.2
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 1.6e-53 213.4 177 74.0
BcaC01g06458 Brassica carinata HOM05D003238 ORTHO05D003571 1.3e-52 210.3 184 72.8
C03p15230 Brassica napus HOM05D003238 ORTHO05D003571 1.3e-52 210.3 184 72.8
BcaNung05246 Brassica carinata HOM05D003238 ORTHO05D003571 3.3e-51 205.7 178 73.0
AL8G32890 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 6.3e-50 201.4 197 62.9
AT5G57000 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 3.2e-46 189.1 197 64.0
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 4.3e-43 178.7 207 54.1
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 1.8e-25 120.2 211 44.5
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 8.5e-23 111.3 193 43.0
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 1.5e-22 110.5 185 43.8
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 1.8e-20 103.6 219 36.5
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.2e-19 100.9 213 36.6
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.2e-19 100.9 213 36.6
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.2e-19 100.9 240 32.9
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 5.7e-19 98.6 203 38.4
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 5.7e-19 98.6 225 32.9
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 7.5e-19 98.2 239 37.2
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 9.8e-19 97.8 260 38.1
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 1.3e-18 97.4 204 37.7
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 1.4e-17 94.0 141 42.6
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 3.1e-17 92.8 146 41.8
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 4.1e-17 92.4 111 46.8
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 5.4e-17 92.0 231 31.6
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 9.1e-17 91.3 197 36.0
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.7e-16 89.7 197 36.0
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 4.5e-16 89.0 140 40.0
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.3e-15 87.4 197 36.0
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 1.7e-15 87.0 153 37.3
unitig_26.g9174 Utricularia gibba HOM05D003238 ORTHO05D003571 1.7e-15 87.0 124 39.5
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 2.9e-15 86.3 151 43.0
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 8.5e-15 84.7 137 44.5
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.1e-14 84.3 152 39.5
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 1.9e-14 83.6 181 37.0
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.9e-14 83.6 197 35.0
arahy.Tifrunner.gnm1.ann1.ZSY109 Arachis hypogaea HOM05D003238 ORTHO05D003571 3.2e-14 82.8 150 43.3
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 3.2e-14 82.8 150 38.0
ClCG05G000830 Citrullus lanatus HOM05D003238 ORTHO05D003571 4.2e-14 82.4 147 46.3
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 7.2e-14 81.6 166 35.5
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 7.2e-14 81.6 123 44.7
CsaV3_3G008070 Cucumis sativus L. HOM05D003238 ORTHO05D003571 1.2e-13 80.9 235 33.6
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 1.6e-13 80.5 165 35.8
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 6.1e-13 78.6 169 37.3
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 6.1e-13 78.6 169 37.3
Aa31LG3G12880 Aethionema arabicum HOM05D003238 ORTHO05D003571 1.0e-12 77.8 56 75.0
Sed0023757 Sechium edule HOM05D003238 ORTHO05D003571 1.0e-12 77.8 149 36.2
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 1.0e-12 77.8 145 46.2
MELO3C006025.2 Cucumis melo HOM05D003238 ORTHO05D003571 2.3e-12 76.6 173 37.0
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 4.0e-12 75.9 169 35.5
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 4.0e-12 75.9 235 28.5
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 8.8e-12 74.7 88 44.3
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 8.8e-12 74.7 192 33.9
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 8.8e-12 74.7 55 67.3
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 2.0e-11 73.6 224 30.8
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 2.0e-11 73.6 182 34.1
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 4.4e-11 72.4 71 54.9
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 7.5e-11 71.6 151 34.4
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 7.5e-11 71.6 193 30.6
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 9.8e-11 71.2 176 30.7
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.3e-10 70.9 62 54.8
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 1.7e-10 70.5 181 30.4
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 1.7e-10 70.5 45 71.1
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.7e-10 70.5 169 30.8
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 2.8e-10 69.7 142 39.4
HPP92_006473 Vanilla planifolia HOM05D003238 ORTHO05D003571 3.7e-10 69.3 44 70.5
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 4.9e-10 68.9 62 59.7
Sc14g0000680 Simmondsia chinensis HOM05D051806 ORTHO05D003571 4.9e-10 68.9 230 28.7
TAR362G1092 Trochodendron aralioides HOM05D003238 ORTHO05D003571 4.9e-10 68.9 58 60.3
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 4.9e-10 68.9 174 31.6
TAR624G0020 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.1e-09 67.8 62 58.1
RcHm_v2.0_Chr3g0459511 Rosa chinensis HOM05D003238 ORTHO05D003571 1.4e-09 67.4 81 50.6
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 2.4e-09 66.6 61 52.5
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 3.1e-09 66.2 49 65.3
Lsat_1_v5_gn_1_35700 Lactuca sativa HOM05D003238 ORTHO05D003571 4.1e-09 65.9 95 45.3
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 5.4e-09 65.5 157 32.5
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 5.4e-09 65.5 70 47.1
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 7.0e-09 65.1 196 29.1
HanXRQChr02g0031751 Helianthus annuus HOM05D003238 ORTHO05D003571 1.2e-08 64.3 55 60.0
RcHm_v2.0_Chr2g0144001 Rosa chinensis HOM05D003238 ORTHO05D003571 2.0e-08 63.5 63 54.0
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.5e-08 62.8 55 61.8
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 4.5e-08 62.4 191 29.8
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 5.9e-08 62.0 159 34.0
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 7.7e-08 61.6 55 61.8
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.7e-08 61.6 55 61.8
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 7.7e-08 61.6 194 28.4
Sc18g0002230 Simmondsia chinensis HOM05D003238 ORTHO05D003571 7.7e-08 61.6 119 34.5
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 1.0e-07 61.2 176 33.5
Lsat_1_v5_gn_5_142981 Lactuca sativa HOM05D003238 ORTHO05D003571 1.0e-07 61.2 97 42.3
TAR375G0996 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.0e-07 61.2 62 53.2
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.7e-07 60.5 55 60.0
MD09G1190500 Malus domestica HOM05D003238 ORTHO05D003571 1.7e-07 60.5 62 54.8
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 2.3e-07 60.1 57 49.1
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 2.9e-07 59.7 116 41.4
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 8.6e-07 58.2 200 32.5
BcaNung05566 Brassica carinata HOM05D003238 ORTHO05D003571 2.5e-06 56.6 64 42.2
C05p15920 Brassica napus HOM05D003238 ORTHO05D003571 2.5e-06 56.6 64 42.2
BolC5t30295H Brassica oleracea HOM05D003238 ORTHO05D003571 2.5e-06 56.6 64 42.2
SalBow7G1866 Salvia bowleyana HOM05D003238 ORTHO05D003571 2.5e-06 56.6 44 61.4
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 4.3e-06 55.8 231 29.9
MD13G1283500 Malus domestica HOM05D003238 ORTHO05D003571 7.3e-06 55.1 113 36.3
HPP92_006471 Vanilla planifolia HOM05D003238 ORTHO05D003571 7.3e-06 55.1 34 73.5
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 9.5e-06 54.7 175 28.6
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 9.5e-06 54.7 94 39.4


User provided reference genes

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