Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g18060 Schrenkiella parvula HOM05D003079 ORTHO05D003461 6.1e-284 980.3 557 100.0
AL8G31840 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 4.5e-178 628.6 561 66.7
AT5G56210 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 4.2e-168 595.5 562 64.4
Carub.0008s1653 Capsella rubella HOM05D003079 ORTHO05D003461 3.5e-167 592.4 564 65.6
Thhalv10013313m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 1.6e-164 583.6 558 64.7
Aa31LG3G12120 Aethionema arabicum HOM05D003079 ORTHO05D003461 3.1e-123 446.4 571 51.1
THA.LOC104811703 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 2.3e-105 387.1 599 45.2
CARHR269610 Cardamine hirsuta HOM05D003079 ORTHO05D003461 2.8e-79 300.4 266 65.4
Thhalv10024990m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 3.1e-78 297.0 594 40.1
Carub.0007s1447 Capsella rubella HOM05D003079 ORTHO05D003461 4.5e-77 293.1 600 42.3
QL08p000493 Quercus lobata HOM05D003079 ORTHO05D003461 8.4e-76 288.9 623 38.7
CARHR234020 Cardamine hirsuta HOM05D003079 ORTHO05D003461 1.4e-75 288.1 578 40.7
BcaB08g35981 Brassica carinata HOM05D003079 ORTHO05D003461 1.9e-72 277.7 324 55.9
AT4G26455 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 3.6e-71 273.5 592 39.4
C09p47450 Brassica napus HOM05D003079 ORTHO05D003461 8.1e-71 272.3 260 63.8
AL7G26490 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 6.9e-70 269.2 584 39.6
Sp7g24370 Schrenkiella parvula HOM05D003079 ORTHO05D003461 1.1e-67 261.9 607 39.7
A10p13440 Brassica napus HOM05D003079 ORTHO05D003461 3.2e-67 260.4 260 61.5
BraA10t43447Z Brassica rapa HOM05D003079 ORTHO05D003461 3.2e-67 260.4 260 61.5
BcaC04g20138 Brassica carinata HOM05D003079 ORTHO05D003461 4.2e-67 260.0 259 62.2
BolC9t57600H Brassica oleracea HOM05D003079 ORTHO05D003461 4.2e-67 260.0 259 62.2
Thecc.07G001500 Theobroma cacao HOM05D003079 ORTHO05D003461 4.2e-67 260.0 646 36.1
Duzib268G0697 Durio zibethinus HOM05D003079 ORTHO05D003461 9.3e-67 258.8 637 34.4
Gohir.A13G128400 Gossypium hirsutum HOM05D003079 ORTHO05D003461 1.6e-66 258.1 640 35.5
Haze_09917 Corylus avellana HOM05D003079 ORTHO05D003461 1.0e-65 255.4 594 37.5
Potri.001G472000 Populus trichocarpa HOM05D003079 ORTHO05D003461 1.3e-65 255.0 551 38.8
Ciclev10007777m.g Citrus clementina HOM05D003079 ORTHO05D003461 1.8e-65 254.6 623 36.9
Gohir.D13G131800 Gossypium hirsutum HOM05D003079 ORTHO05D003461 2.3e-65 254.2 638 35.3
Potri.011G169000 Populus trichocarpa HOM05D003079 ORTHO05D003461 6.7e-65 252.7 653 36.9
Gorai.013G147800 Gossypium raimondii HOM05D003079 ORTHO05D003461 8.7e-65 252.3 638 34.6
C01p22370 Brassica napus HOM05D003079 ORTHO05D003461 2.5e-64 250.8 599 38.4
BcaC09g50710 Brassica carinata HOM05D003079 ORTHO05D003461 4.3e-64 250.0 609 39.1
BolC1t02168H Brassica oleracea HOM05D003079 ORTHO05D003461 5.6e-64 249.6 607 39.2
Duzib213G0264 Durio zibethinus HOM05D003079 ORTHO05D003461 2.8e-63 247.3 642 36.6
TWI14G0136 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 2.8e-63 247.3 623 36.0
TWI39G1230 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 6.2e-63 246.1 631 35.8
GSVIVG01014846001 Vitis vinifera HOM05D003079 ORTHO05D003461 1.5e-61 241.5 569 38.1
MELO3C014061.2 Cucumis melo HOM05D003079 ORTHO05D003461 2.0e-61 241.1 618 36.1
Manes.05G204700 Manihot esculenta HOM05D003079 ORTHO05D003461 2.6e-61 240.7 635 35.3
BcaNung02417 Brassica carinata HOM05D003079 ORTHO05D003461 3.8e-60 236.9 603 37.6
CSS0022300 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 4.9e-60 236.5 571 36.3
CSS0035812 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 6.5e-60 236.1 571 36.3
Duzib170G0955 Durio zibethinus HOM05D003079 ORTHO05D003461 1.2e-58 231.9 607 33.9
Prupe.6G035500 Prunus persica HOM05D003079 ORTHO05D003461 1.2e-58 231.9 621 34.3
MD11G1046100 Malus domestica HOM05D003079 ORTHO05D003461 2.7e-58 230.7 592 35.0
BraA01t01726Z Brassica rapa HOM05D003079 ORTHO05D003461 1.0e-57 228.8 595 37.0
ClCG00G001200 Citrullus lanatus HOM05D003079 ORTHO05D003461 1.8e-57 228.0 622 35.4
ClCG10G003820 Citrullus lanatus HOM05D003079 ORTHO05D003461 1.8e-57 228.0 622 35.4
ClCG10G003930 Citrullus lanatus HOM05D003079 ORTHO05D003461 1.8e-57 228.0 622 35.4
TWI38G1795 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 1.8e-57 228.0 550 37.5
A01p17700 Brassica napus HOM05D003079 ORTHO05D003461 3.0e-57 227.3 595 36.8
CANSAT11G2157 Cannabis sativa HOM05D003079 ORTHO05D003461 3.0e-57 227.3 563 34.3
Sed0022199 Sechium edule HOM05D003079 ORTHO05D003461 1.5e-56 224.9 622 35.9
Cpa.g.sc12.64 Carica papaya HOM05D003079 ORTHO05D003461 2.5e-56 224.2 549 36.4
Eucgr.F03644 Eucalyptus grandis HOM05D003079 ORTHO05D003461 3.3e-56 223.8 583 33.6
Nitab4.5_0009408g0020 Nicotiana tabacum HOM05D003079 ORTHO05D003461 5.7e-56 223.0 603 34.0
FAN21G1152 Fragaria x ananassa HOM05D003079 ORTHO05D003461 2.4e-54 217.6 581 34.6
CsaV3_3G003800 Cucumis sativus L. HOM05D003079 ORTHO05D003461 4.1e-54 216.9 626 34.7
RcHm_v2.0_Chr5g0074601 Rosa chinensis HOM05D003079 ORTHO05D003461 6.9e-54 216.1 543 35.4
PGR083G0768 Punica granatum HOM05D003079 ORTHO05D003461 9.0e-54 215.7 612 34.3
FvH4_3g41590 Fragaria vesca HOM05D003079 ORTHO05D003461 3.4e-53 213.8 541 36.4
Sabra11G0137800 Salix brachista HOM05D003079 ORTHO05D003461 3.4e-53 213.8 647 33.8
MD03G1043100 Malus domestica HOM05D003079 ORTHO05D003461 4.5e-53 213.4 600 34.0
FAN11G0995 Fragaria x ananassa HOM05D003079 ORTHO05D003461 2.9e-52 210.7 576 35.1
Actinidia31529 Actinidia chinensis HOM05D003079 ORTHO05D003461 3.8e-52 210.3 595 33.8
Lj1A901G36 Lonicera japonica HOM05D003079 ORTHO05D003461 3.8e-52 210.3 599 34.4
Hma1.2p1_0193F.1_g084340 Hydrangea macrophylla HOM05D003079 ORTHO05D003461 5.0e-52 209.9 595 33.9
FAN16G0740 Fragaria x ananassa HOM05D003079 ORTHO05D003461 8.5e-52 209.1 601 33.3
Nitab4.5_0000152g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.4e-51 208.4 618 32.8
Gohir.A11G276200 Gossypium hirsutum HOM05D003079 ORTHO05D003461 1.9e-51 208.0 646 32.4
Cc05_g15720 Coffea canephora HOM05D003079 ORTHO05D003461 4.2e-51 206.8 617 33.5
Atru.chr2.3897 Acer truncatum HOM05D003079 ORTHO05D003461 5.5e-51 206.5 623 35.0
Nitab4.5_0000611g0170 Nicotiana tabacum HOM05D003079 ORTHO05D003461 5.1e-49 199.9 549 33.7
Dinv19642 Davidia involucrata HOM05D003079 ORTHO05D003461 6.7e-49 199.5 595 34.1
Phvul.L001609 Phaseolus vulgaris HOM05D003079 ORTHO05D003461 2.5e-48 197.6 612 34.6
Gohir.D11G286600 Gossypium hirsutum HOM05D003079 ORTHO05D003461 1.3e-47 195.3 643 31.9
CAN.G623.75 Capsicum annuum HOM05D003079 ORTHO05D003461 2.2e-47 194.5 529 34.0
Gorai.007G310000 Gossypium raimondii HOM05D003079 ORTHO05D003461 3.7e-47 193.7 643 31.4
Sed0005838 Sechium edule HOM05D003079 ORTHO05D003461 8.2e-47 192.6 595 33.3
CiPaw.12G142800 Carya illinoinensis HOM05D003079 ORTHO05D003461 1.4e-46 191.8 608 33.9
Sc03g0011780 Simmondsia chinensis HOM05D003079 ORTHO05D003461 1.8e-46 191.4 569 33.4
CiPaw.12G142700 Carya illinoinensis HOM05D003079 ORTHO05D003461 2.4e-46 191.0 606 33.3
Peaxi162Scf00232g00614 Petunia axillaris HOM05D003079 ORTHO05D003461 1.2e-45 188.7 605 31.9
CSS0018146 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 1.5e-45 188.3 609 32.3
Nitab4.5_0001622g0150 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.5e-45 188.3 598 31.4
Nn1g07629 Nelumbo nucifera HOM05D003079 ORTHO05D003461 2.0e-45 188.0 560 34.3
DCAR_013756 Daucus carota HOM05D003079 ORTHO05D003461 2.6e-45 187.6 600 33.8
Glyma.04G113700 Glycine max HOM05D003079 ORTHO05D003461 3.4e-45 187.2 611 32.4
vmacro11641 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 3.4e-45 187.2 534 32.8
Oeu052026.1 Olea europaea HOM05D003079 ORTHO05D003461 6.5e-44 183.0 577 33.3
TAR611G0001 Trochodendron aralioides HOM05D003079 ORTHO05D003461 6.5e-44 183.0 601 32.1
Psat5g231200 Pisum sativum HOM05D003079 ORTHO05D003461 2.5e-43 181.0 603 30.8
Glyma.06G321400 Glycine max HOM05D003079 ORTHO05D003461 5.5e-43 179.9 613 32.0
PGSC0003DMG400008693 Solanum tuberosum HOM05D003079 ORTHO05D003461 9.4e-43 179.1 585 31.3
Sopen10g001680 Solanum pennellii HOM05D003079 ORTHO05D003461 2.1e-42 177.9 583 30.4
CAN.G492.58 Capsicum annuum HOM05D003079 ORTHO05D003461 4.6e-42 176.8 584 31.2
Dinv40917 Davidia involucrata HOM05D003079 ORTHO05D003461 6.1e-42 176.4 616 31.3
Medtr3g009740 Medicago truncatula HOM05D003079 ORTHO05D003461 2.3e-41 174.5 600 31.7
Lj3g0020124 Lotus japonicus HOM05D003079 ORTHO05D003461 2.6e-40 171.0 610 32.0
VMungo1080G0483 Vigna mungo HOM05D003079 ORTHO05D003461 3.3e-40 170.6 580 33.1
Nitab4.5_0002216g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 4.4e-40 170.2 450 34.0
arahy.Tifrunner.gnm1.ann1.FC0SK2 Arachis hypogaea HOM05D003079 ORTHO05D003461 5.7e-40 169.9 541 33.5
Sopen07g034350 Solanum pennellii HOM05D003079 ORTHO05D003461 5.7e-40 169.9 538 32.9
arahy.Tifrunner.gnm1.ann1.WAW8B8 Arachis hypogaea HOM05D003079 ORTHO05D003461 1.1e-38 165.6 608 31.6
Nitab4.5_0003570g0050 Nicotiana tabacum HOM05D003079 ORTHO05D003461 4.1e-38 163.7 449 32.7
SalBow8G1693 Salvia bowleyana HOM05D003079 ORTHO05D003461 4.1e-38 163.7 540 31.1
TAR627G0159 Trochodendron aralioides HOM05D003079 ORTHO05D003461 4.1e-38 163.7 577 31.9
TPR.G16690 Trifolium pratense HOM05D003079 ORTHO05D003461 2.0e-37 161.4 607 31.1
PSO782G1655 Papaver somniferum HOM05D003079 ORTHO05D003461 3.4e-37 160.6 577 30.5
MBI15_g44396_MAGBIO Magnolia biondii HOM05D003079 ORTHO05D003461 8.5e-36 156.0 539 31.7
PGSC0003DMG400022146 Solanum tuberosum HOM05D003079 ORTHO05D003461 1.4e-35 155.2 609 30.0
MSTRG.13045 Avicennia marina HOM05D003079 ORTHO05D003461 3.2e-35 154.1 604 30.8
PSO063G6668 Papaver somniferum HOM05D003079 ORTHO05D003461 4.2e-35 153.7 589 30.2
FAN25G3298 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.2e-34 152.1 535 30.3
COL.COLO4_07791 Corchorus olitorius HOM05D003079 ORTHO05D003461 6.1e-34 149.8 265 41.9
Actinidia30350 Actinidia chinensis HOM05D003079 ORTHO05D003461 1.8e-33 148.3 376 38.6
Rhsim06G0235200 Rhododendron simsii HOM05D003079 ORTHO05D003461 2.3e-33 147.9 597 30.7
Hund22967 Selenicereus undatus HOM05D003079 ORTHO05D003461 1.3e-31 142.1 574 31.5
Migut.H01709 Erythranthe guttata HOM05D003079 ORTHO05D003461 2.4e-30 137.9 571 30.1
Migut.M01581 Erythranthe guttata HOM05D003079 ORTHO05D003461 2.4e-30 137.9 585 29.6
MSTRG.16132 Avicennia marina HOM05D003079 ORTHO05D003461 4.5e-29 133.7 608 29.1
Lj8C183T12 Lonicera japonica HOM05D003079 ORTHO05D003461 8.5e-28 129.4 611 26.8
Oeu005543.1 Olea europaea HOM05D003079 ORTHO05D003461 5.5e-27 126.7 568 29.4
Lalb_Chr15g0079931 Lupinus albus HOM05D003079 ORTHO05D003461 4.7e-26 123.6 505 31.3
AL3G25210 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 5.2e-25 120.2 460 31.5
SGA_v2.0_scaffold92G28159 Striga asiatica HOM05D003079 ORTHO05D003461 5.2e-25 120.2 507 29.0
DCAR_017612 Daucus carota HOM05D003079 ORTHO05D003461 1.2e-24 119.0 637 28.1
Sp3g11560 Schrenkiella parvula HOM05D003079 ORTHO05D003461 1.5e-24 118.6 488 30.3
THA.LOC104815679 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 2.6e-24 117.9 531 29.6
CiPaw.12G142900 Carya illinoinensis HOM05D003079 ORTHO05D003461 7.5e-24 116.3 248 36.3
Rhsim04G0008000 Rhododendron simsii HOM05D003079 ORTHO05D003461 9.7e-24 115.9 665 26.5
Thhalv10020643m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 1.7e-20 105.1 553 27.1
HPP92_007490 Vanilla planifolia HOM05D003079 ORTHO05D003461 2.9e-20 104.4 530 27.4
HPP92_022810 Vanilla planifolia HOM05D003079 ORTHO05D003461 2.9e-20 104.4 551 26.1
CARHR087980 Cardamine hirsuta HOM05D003079 ORTHO05D003461 5.0e-20 103.6 471 29.1
TAR626G0479 Trochodendron aralioides HOM05D003079 ORTHO05D003461 8.5e-20 102.8 295 36.6
Solyc07g066170.4 Solanum lycopersicum HOM05D003079 ORTHO05D003461 2.5e-19 101.3 283 31.4
vmacro09798 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 4.2e-19 100.5 768 25.8
Lalb_Chr04g0259441 Lupinus albus HOM05D003079 ORTHO05D003461 2.1e-18 98.2 583 29.2
AT3G13360 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 3.6e-18 97.4 446 30.0
Oeu062673.1 Olea europaea HOM05D003079 ORTHO05D003461 1.0e-17 95.9 192 42.2
HanXRQChr11g0335521 Helianthus annuus HOM05D003079 ORTHO05D003461 5.2e-17 93.6 523 27.3
BcaB04g18754 Brassica carinata HOM05D003079 ORTHO05D003461 1.2e-16 92.4 530 25.7
Aa31LG8G580 Aethionema arabicum HOM05D003079 ORTHO05D003461 2.0e-16 91.7 557 27.1
Aqoxy4G02267 Aquilegia oxysepala HOM05D003079 ORTHO05D003461 2.6e-16 91.3 589 26.1
Carub.0003s1274 Capsella rubella HOM05D003079 ORTHO05D003461 2.6e-16 91.3 460 27.6
Lsat_1_v5_gn_7_115521 Lactuca sativa HOM05D003079 ORTHO05D003461 6.3e-15 86.7 510 26.5
BcaC01g03997 Brassica carinata HOM05D003079 ORTHO05D003461 1.4e-14 85.5 507 26.2
BolC3t16901H Brassica oleracea HOM05D003079 ORTHO05D003461 1.4e-14 85.5 511 26.6
A03p38160 Brassica napus HOM05D003079 ORTHO05D003461 4.1e-14 84.0 421 27.3
BraA03t12969Z Brassica rapa HOM05D003079 ORTHO05D003461 4.1e-14 84.0 421 27.3
COL.COLO4_07790 Corchorus olitorius HOM05D003079 ORTHO05D003461 5.4e-14 83.6 155 37.4
C03p46320 Brassica napus HOM05D003079 ORTHO05D003461 2.7e-13 81.3 507 26.0
Aqoxy7G02327 Aquilegia oxysepala HOM05D003079 ORTHO05D003461 5.9e-13 80.1 288 27.8
BcaB04g21010 Brassica carinata HOM05D003079 ORTHO05D003461 7.7e-13 79.7 425 26.8
BraA01t04061Z Brassica rapa HOM05D003079 ORTHO05D003461 1.3e-12 79.0 399 26.8
Zm00001eb316300 Zea mays HOM05D003079 ORTHO05D003461 1.3e-12 79.0 553 25.3
A01p40240 Brassica napus HOM05D003079 ORTHO05D003461 5.0e-12 77.0 399 27.1
Oeu052884.2 Olea europaea HOM05D003079 ORTHO05D003461 2.5e-11 74.7 350 26.9
SGA_v2.0_scaffold186G40233 Striga asiatica HOM05D003079 ORTHO05D003461 2.5e-11 74.7 351 29.1
C01p51720 Brassica napus HOM05D003079 ORTHO05D003461 3.2e-11 74.3 414 26.3
Zm00001eb101670 Zea mays HOM05D003079 ORTHO05D003461 5.5e-11 73.6 587 25.7
BcaC09g48303 Brassica carinata HOM05D003079 ORTHO05D003461 7.2e-11 73.2 443 25.5
Haze_20425 Corylus avellana HOM05D003079 ORTHO05D003461 9.5e-11 72.8 82 56.1
Actinidia30351 Actinidia chinensis HOM05D003079 ORTHO05D003461 1.6e-10 72.0 216 29.2
AUR62043120 Chenopodium quinoa HOM05D003079 ORTHO05D003461 2.1e-10 71.6 270 30.0
BolC1t05117H Brassica oleracea HOM05D003079 ORTHO05D003461 3.6e-10 70.9 412 26.5
Haze_07774 Corylus avellana HOM05D003079 ORTHO05D003461 4.7e-10 70.5 70 60.0
TAR626G1036 Trochodendron aralioides HOM05D003079 ORTHO05D003461 4.7e-10 70.5 253 30.8
ATR0751G003 Amborella trichopoda HOM05D003079 ORTHO05D003461 6.1e-10 70.1 217 36.9
Lalb_Chr18g0048661 Lupinus albus HOM05D003079 ORTHO05D003461 1.4e-09 68.9 186 32.8
Ca_09552_v3 Cicer arietinum L. HOM05D003079 ORTHO05D003461 1.8e-09 68.6 186 34.9
Ca_06048_v3 Cicer arietinum L. HOM05D003079 ORTHO05D003461 2.3e-09 68.2 117 41.0
Ah.06g180930 Amaranthus hybridus HOM05D003079 ORTHO05D003461 3.0e-09 67.8 273 28.2
Medtr8g070940 Medicago truncatula HOM05D003079 ORTHO05D003461 3.0e-09 67.8 260 25.8
ECA236G4881 Erigeron canadensis HOM05D003079 ORTHO05D003461 1.5e-08 65.5 476 26.1
CDE02G1968 Ceratophyllum demersum HOM05D000308 ORTHO05D003461 4.4e-08 63.9 447 25.3
Oeu015272.1 Olea europaea HOM05D003079 ORTHO05D003461 9.8e-08 62.8 129 34.9
EL10Ac4g08434 Beta vulgaris HOM05D003079 ORTHO05D003461 1.7e-07 62.0 615 24.1
ATR0751G103 Amborella trichopoda HOM05D003079 ORTHO05D003461 1.4e-06 58.9 130 33.8
Peaxi162Scf00006g00810 Petunia axillaris HOM05D003079 ORTHO05D003461 1.4e-06 58.9 233 29.2
Os09g0481300 Oryza sativa ssp. japonica HOM05D003079 ORTHO05D003461 2.4e-06 58.2 553 27.3
Psat4g111200 Pisum sativum HOM05D003079 ORTHO05D003461 9.2e-06 56.2 213 28.6


User provided reference genes

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