Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 0.0e+00 3008.8 1832 100.0
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 0.0e+00 2106.6 1842 74.5
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 0.0e+00 2065.4 1837 74.0
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 0.0e+00 2048.1 1837 72.5
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 0.0e+00 2014.2 1906 69.9
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 0.0e+00 1879.4 1855 66.6
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 0.0e+00 1834.3 1848 65.0
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 0.0e+00 1821.6 1944 63.0
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 0.0e+00 1803.9 1917 63.6
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 0.0e+00 1749.9 1843 65.6
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 0.0e+00 1409.4 2024 52.8
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 3.0e-303 1046.2 1101 61.5
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 1.1e-286 991.1 2074 43.9
BcaB08g35941 Brassica carinata HOM05D004836 ORTHO05D005150 1.3e-128 466.1 380 71.6
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 5.9e-110 404.1 280 76.1
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 5.4e-71 274.6 1986 27.4
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 4.0e-66 258.5 728 40.2
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 1.4e-63 250.0 2022 27.1
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 5.4e-63 248.1 1886 28.2
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 1.2e-62 246.9 681 40.4
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 2.7e-62 245.7 1990 26.7
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 4.3e-60 238.4 665 40.5
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 1.6e-59 236.5 685 38.0
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 3.6e-59 235.3 1953 27.8
C02p15810 Brassica napus HOM05D004836 ORTHO05D017167 6.2e-59 234.6 213 64.3
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 4.4e-57 228.4 1981 27.8
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 1.3e-56 226.9 1940 26.6
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 5.4e-55 221.5 667 37.0
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 9.2e-55 220.7 681 40.5
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.6e-54 219.9 1943 27.3
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 3.5e-54 218.8 1993 27.0
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 7.8e-54 217.6 663 33.5
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 3.9e-53 215.3 1996 26.9
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 6.6e-53 214.5 1935 26.3
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 2.5e-52 212.6 719 39.6
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.6e-51 209.9 656 35.8
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 4.7e-51 208.4 647 37.6
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 1.9e-47 196.4 1991 27.4
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 2.4e-47 196.1 1915 26.6
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 2.4e-47 196.1 685 35.5
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 5.4e-47 194.9 672 34.8
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 1.2e-46 193.7 2013 27.2
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 6.0e-46 191.4 1916 25.9
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.7e-45 189.9 1920 27.6
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 2.3e-45 189.5 669 39.6
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 2.3e-45 189.5 653 40.1
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 2.5e-44 186.0 504 42.7
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 3.3e-44 185.7 1955 25.9
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 5.6e-44 184.9 653 34.6
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 9.6e-44 184.1 689 35.0
BolC2t07687H Brassica oleracea HOM05D000026 ORTHO05D017167 3.6e-43 182.2 149 66.4
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 3.6e-43 182.2 1991 24.4
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 8.1e-43 181.0 608 31.1
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 3.1e-42 179.1 387 37.5
BcaB08g35942 Brassica carinata HOM05D004836 ORTHO05D005150 2.6e-41 176.0 148 69.6
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 3.4e-41 175.6 388 37.1
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 3.4e-41 175.6 661 37.8
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.7e-40 173.3 1961 23.4
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 2.2e-40 172.9 1969 23.8
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 4.9e-40 171.8 841 31.7
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 6.4e-40 171.4 632 34.3
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 1.1e-39 170.6 1850 25.0
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 2.4e-39 169.5 1909 23.6
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 5.4e-39 168.3 659 34.4
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.7e-38 166.0 659 34.0
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 2.7e-38 166.0 839 31.5
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 6.0e-38 164.9 1020 29.7
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 7.9e-38 164.5 1949 24.2
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 3.0e-37 162.5 846 31.6
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 1.9e-36 159.8 664 33.4
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 4.3e-36 158.7 690 33.0
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 4.3e-36 158.7 553 38.7
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 4.3e-36 158.7 681 34.5
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 5.6e-36 158.3 1961 23.7
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 7.4e-36 157.9 1964 25.6
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 1.3e-35 157.1 664 37.0
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 2.8e-35 156.0 660 34.1
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 4.8e-35 155.2 662 34.1
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 6.2e-35 154.8 1976 25.0
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 8.1e-35 154.5 917 30.6
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 3.1e-34 152.5 660 35.2
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 6.9e-34 151.4 850 30.9
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 2.0e-33 149.8 664 35.5
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 2.6e-33 149.4 1907 23.7
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 2.6e-33 149.4 677 31.6
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 9.9e-33 147.5 1973 24.2
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 2.9e-32 146.0 649 34.1
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 2.9e-32 146.0 409 33.7
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 3.5e-30 139.0 1884 25.6
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 3.0e-29 136.0 519 39.5
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 7.4e-28 131.3 1903 25.1
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 1.3e-27 130.6 604 38.9
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 2.8e-27 129.4 430 33.5
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 8.1e-27 127.9 628 34.1
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 1.4e-26 127.1 656 32.5
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 4.0e-26 125.6 656 32.3
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 2.0e-25 123.2 1988 23.6
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 2.6e-25 122.9 653 33.4
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 1.7e-24 120.2 652 35.6
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 3.8e-24 119.0 1037 26.3
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 7.1e-23 114.8 644 34.5
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 1.2e-22 114.0 319 32.3
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 2.7e-22 112.8 626 35.8
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 1.0e-21 110.9 1690 22.5
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 2.3e-21 109.8 1955 23.3
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 3.9e-21 109.0 1921 24.8
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 3.9e-21 109.0 728 29.7
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 5.1e-21 108.6 632 28.6
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 7.4e-20 104.8 670 26.4
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 1.6e-19 103.6 696 28.2
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 3.7e-19 102.4 637 27.2
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 4.8e-19 102.1 686 36.9
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 6.3e-19 101.7 112 50.0
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 2.4e-18 99.8 92 56.5
C02p15800 Brassica napus HOM05D000026 ORTHO05D017167 7.6e-17 94.7 98 61.2
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 1.3e-16 94.0 640 35.9
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 1.7e-16 93.6 321 29.6
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 5.0e-16 92.0 401 27.2
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 3.2e-15 89.4 1634 22.3
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 1.2e-14 87.4 72 69.4
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.8e-13 83.6 156 44.2
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.8e-13 83.6 133 49.6
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 8.7e-13 81.3 257 28.8
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 8.7e-13 81.3 75 49.3
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.5e-12 80.5 64 60.9
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 1.5e-12 80.5 441 37.4
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 1.9e-12 80.1 257 28.8
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 2.2e-11 76.6 75 52.0
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 4.8e-11 75.5 355 28.2
Cpa.g.c38368 Carica papaya HOM05D004836 ORTHO05D005150 6.3e-11 75.1 56 60.7
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 8.2e-11 74.7 75 50.7
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 1.1e-10 74.3 384 25.3
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 3.1e-10 72.8 138 39.1
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 4.1e-10 72.4 77 48.1
HanXRQChr03g0074021 Helianthus annuus HOM05D004836 ORTHO05D005150 4.5e-09 68.9 58 55.2
Pp3c1_42830 Physcomitrium patens HOM05D014698 ORTHO05D016532 1.3e-08 67.4 72 54.2
RhsimUnG0156400 Rhododendron simsii HOM05D000074 ORTHO05D001262 1.3e-08 67.4 54 59.3
CDE02G4444 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 5.0e-08 65.5 282 30.1
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 2.5e-07 63.2 59 59.3
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 3.2e-07 62.8 63 52.4
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 4.2e-07 62.4 659 29.7
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 4.2e-07 62.4 269 39.0
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 5.5e-07 62.0 294 27.9


User provided reference genes

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