Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 1.2e-135 486.5 239 100.0
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 6.9e-128 460.7 239 92.9
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 8.5e-126 453.8 237 92.0
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 2.7e-124 448.7 237 89.9
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 1.9e-122 442.6 236 90.3
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 1.3e-118 429.9 237 87.8
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 3.0e-115 418.7 237 85.2
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 2.8e-113 412.1 237 83.5
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 8.2e-113 410.6 237 84.4
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 8.2e-113 410.6 237 84.4
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 2.4e-112 409.1 237 82.3
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 2.2e-110 402.5 238 81.1
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 2.7e-108 395.6 208 92.8
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 4.7e-108 394.8 207 89.4
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 3.0e-107 392.1 208 92.3
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 5.2e-107 391.3 208 91.8
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 2.6e-106 389.0 208 90.9
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 3.3e-106 388.7 207 89.4
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 1.9e-101 372.9 235 77.0
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 5.0e-94 348.2 235 70.2
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 6.5e-94 347.8 235 70.6
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 1.9e-93 346.3 237 69.6
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 5.5e-93 344.7 234 68.8
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 2.7e-92 342.4 237 69.2
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 1.0e-91 340.5 234 68.4
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 1.4e-91 340.1 234 67.5
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 1.4e-91 340.1 234 68.8
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 4.0e-91 338.6 243 67.1
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 5.2e-91 338.2 243 67.1
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 5.2e-91 338.2 243 68.7
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 1.5e-90 336.7 243 67.1
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 1.5e-90 336.7 243 67.1
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 4.4e-90 335.1 243 66.7
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 5.7e-90 334.7 238 67.2
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 7.5e-90 334.3 243 65.8
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 9.8e-90 334.0 238 66.0
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 2.8e-89 332.4 245 63.3
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 3.7e-89 332.0 243 65.4
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 3.7e-89 332.0 244 64.3
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 3.7e-89 332.0 243 66.7
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 3.7e-89 332.0 247 65.6
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 4.8e-89 331.6 243 66.3
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 4.8e-89 331.6 243 64.6
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 4.8e-89 331.6 244 66.4
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 8.3e-89 330.9 243 65.8
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 1.4e-88 330.1 245 66.1
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 1.4e-88 330.1 242 66.9
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.8e-88 329.7 237 65.4
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 2.4e-88 329.3 243 64.2
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 2.4e-88 329.3 236 67.8
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 5.4e-88 328.2 245 63.3
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 5.4e-88 328.2 237 64.6
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 5.4e-88 328.2 237 65.0
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 1.6e-87 326.6 245 64.9
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 2.0e-87 326.2 237 65.4
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.7e-87 325.9 237 64.6
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 3.5e-87 325.5 243 63.8
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 3.5e-87 325.5 244 64.8
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 5.9e-87 324.7 245 63.7
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 5.9e-87 324.7 242 64.9
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 7.7e-87 324.3 243 65.4
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 1.3e-86 323.6 238 65.1
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 1.3e-86 323.6 243 64.2
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 1.7e-86 323.2 237 65.4
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 1.7e-86 323.2 237 64.1
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 2.9e-86 322.4 243 63.8
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 2.9e-86 322.4 242 64.0
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 3.8e-86 322.0 244 63.9
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 3.8e-86 322.0 244 64.3
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 6.5e-86 321.2 237 64.6
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 8.6e-86 320.9 243 62.6
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 1.9e-85 319.7 243 63.8
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 2.5e-85 319.3 238 65.5
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 2.5e-85 319.3 235 66.4
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 2.5e-85 319.3 237 65.4
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 7.2e-85 317.8 235 66.0
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 7.2e-85 317.8 244 63.5
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 7.2e-85 317.8 217 69.1
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 1.2e-84 317.0 242 63.2
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 8.0e-84 314.3 237 61.6
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 8.0e-84 314.3 243 63.4
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 4.0e-83 312.0 235 64.7
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 6.8e-83 311.2 280 56.4
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 2.6e-82 309.3 217 65.9
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 5.7e-82 308.1 244 62.7
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 1.3e-81 307.0 167 86.8
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 8.3e-81 304.3 242 62.4
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 9.2e-80 300.8 235 63.4
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 2.5e-77 292.7 243 59.7
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 7.3e-77 291.2 269 55.0
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 4.7e-76 288.5 199 68.8
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 1.8e-75 286.6 199 68.8
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 3.0e-75 285.8 200 68.0
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 3.7e-73 278.9 218 66.5
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 6.4e-73 278.1 216 63.4
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 5.4e-72 275.0 196 65.8
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 7.0e-72 274.6 233 57.9
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 7.0e-72 274.6 192 66.7
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 7.0e-72 274.6 264 52.3
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 2.7e-71 272.7 239 52.7
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 3.5e-71 272.3 243 57.2
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 4.6e-71 271.9 240 55.8
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 6.0e-71 271.6 239 53.1
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 6.0e-71 271.6 178 70.2
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 6.6e-70 268.1 239 53.1
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 6.6e-70 268.1 255 54.5
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 1.5e-69 266.9 203 64.0
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 2.1e-68 263.1 239 53.6
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 2.3e-67 259.6 196 62.8
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.2e-66 257.3 240 50.0
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 1.5e-66 256.9 185 65.4
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 2.6e-66 256.1 228 61.4
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 9.2e-64 247.7 189 63.0
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 1.6e-63 246.9 194 66.0
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.9e-61 240.0 200 57.0
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 2.1e-60 236.5 164 66.5
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 2.1e-60 236.5 237 52.7
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 3.1e-59 232.6 230 54.3
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 4.4e-58 228.8 242 51.2
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 6.4e-57 224.9 221 50.7
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.7e-54 216.9 212 54.7
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 3.9e-54 215.7 185 56.8
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 3.9e-54 215.7 214 48.6
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 5.1e-54 215.3 172 62.8
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 2.4e-51 206.5 241 51.0
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 6.8e-51 204.9 142 69.7
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 6.8e-51 204.9 193 54.4
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.1e-48 197.6 196 50.5
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 1.2e-47 194.1 196 52.0
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 7.8e-47 191.4 129 69.8
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 3.0e-46 189.5 172 55.2
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 3.3e-45 186.0 166 56.0
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 2.1e-44 183.3 189 49.7
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 9.3e-40 167.9 107 73.8
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 3.5e-39 166.0 219 41.6
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.1e-35 154.5 104 66.3
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 1.7e-33 147.1 103 68.9
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 8.4e-33 144.8 106 60.4
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 3.2e-32 142.9 106 67.0
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 7.1e-32 141.7 100 66.0
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 3.8e-25 119.4 225 37.8
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 1.3e-22 110.9 179 35.2
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 6.7e-22 108.6 156 41.7
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 1.6e-20 104.0 97 50.5
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 9.3e-16 88.2 69 59.4
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.9e-13 80.5 55 63.6
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 1.3e-12 77.8 72 54.2
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 1.6e-12 77.4 111 36.0
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 8.2e-12 75.1 82 43.9
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 5.3e-11 72.4 65 58.5
SEGI_37983 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 1.1e-08 64.7 82 39.0
FAN16G1285 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.5e-08 63.5 46 63.0


User provided reference genes

Program Settings