Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g16920 Schrenkiella parvula HOM05D009587 ORTHO05D004912 6.0e-68 260.8 136 100.0
Thhalv10015018m.g Eutrema salsugineum HOM05D009587 ORTHO05D004912 3.3e-50 201.8 137 82.5
CARHR268310 Cardamine hirsuta HOM05D009587 ORTHO05D004912 9.3e-45 183.7 137 73.0
Carub.0008s1526 Capsella rubella HOM05D009587 ORTHO05D004912 1.3e-43 179.9 140 73.6
AL8G30440 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 1.3e-41 173.3 143 72.0
AT5G54970 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 9.0e-40 167.2 138 71.0
C03p16740 Brassica napus HOM05D009587 ORTHO05D004912 6.0e-36 154.5 138 65.9
A03p14360 Brassica napus HOM05D009587 ORTHO05D004912 5.1e-35 151.4 140 65.0
BolC3t14094H Brassica oleracea HOM05D009587 ORTHO05D004912 6.7e-35 151.0 138 64.5
BcaC01g06332 Brassica carinata HOM05D009587 ORTHO05D004912 7.4e-34 147.5 139 64.0
BraA03t10733Z Brassica rapa HOM05D009587 ORTHO05D004912 9.6e-34 147.1 138 64.5
Aa31LG3G10880 Aethionema arabicum HOM05D009587 ORTHO05D004912 4.8e-33 144.8 136 61.8
Carub.0007s1391 Capsella rubella HOM05D009587 ORTHO05D004912 8.2e-33 144.1 140 62.1
BcaB01g04338 Brassica carinata HOM05D009587 ORTHO05D004912 2.9e-30 135.6 137 60.6
AT4G26960 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 3.8e-30 135.2 139 57.6
CARHR234560 Cardamine hirsuta HOM05D009587 ORTHO05D004912 1.1e-29 133.7 134 59.7
Sp7g24900 Schrenkiella parvula HOM05D009587 ORTHO05D004912 9.3e-29 130.6 137 58.4
Aa31LG5G12020 Aethionema arabicum HOM05D009587 ORTHO05D004912 1.0e-27 127.1 135 55.6
THA.LOC104813425 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 5.1e-27 124.8 138 55.1
THA.LOC104817668 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 1.9e-26 122.9 139 54.7
AL7G25880 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 1.3e-25 120.2 111 61.3
BcaC07g38259 Brassica carinata HOM05D009587 ORTHO05D004912 1.2e-23 113.6 139 52.5
C08p10050 Brassica napus HOM05D009587 ORTHO05D004912 1.2e-23 113.6 139 52.5
BolC8t48684H Brassica oleracea HOM05D009587 ORTHO05D004912 1.2e-23 113.6 139 52.5
BraA08t34019Z Brassica rapa HOM05D009587 ORTHO05D004912 2.9e-22 109.0 142 54.9
A08p20650 Brassica napus HOM05D009587 ORTHO05D004912 1.9e-21 106.3 140 48.6
BcaB03g12516 Brassica carinata HOM05D009587 ORTHO05D004912 2.7e-20 102.4 130 51.5
Cpa.g.sc12.298 Carica papaya HOM05D007398 ORTHO05D004912 1.0e-19 100.5 145 48.3
TAR626G0532 Trochodendron aralioides HOM05D007398 ORTHO05D004912 2.7e-12 75.9 136 37.5
Manes.15G071300 Manihot esculenta HOM05D007398 ORTHO05D004912 7.9e-12 74.3 143 44.8
Manes.03G130000 Manihot esculenta HOM05D007398 ORTHO05D004912 3.9e-11 72.0 146 43.2
MBI02_g21879_MAGBIO Magnolia biondii HOM05D007398 ORTHO05D004912 4.4e-10 68.6 103 46.6
QL08p033081 Quercus lobata HOM05D007398 ORTHO05D004912 9.7e-10 67.4 146 40.4
TAR627G0987 Trochodendron aralioides HOM05D007398 ORTHO05D004912 1.3e-09 67.0 133 34.6
Duzib213G1052 Durio zibethinus HOM05D007398 ORTHO05D004912 1.7e-09 66.6 150 38.0
TAR629G1636 Trochodendron aralioides HOM05D007398 ORTHO05D004912 2.2e-09 66.2 135 36.3
Dinv39711 Davidia involucrata HOM05D007398 ORTHO05D004912 2.8e-09 65.9 133 37.6
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 3.7e-09 65.5 134 37.3
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 3.7e-09 65.5 134 37.3
Thecc.07G035100 Theobroma cacao HOM05D007398 ORTHO05D004912 3.7e-09 65.5 147 40.1
TWI75G1275 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 4.8e-09 65.1 139 40.3
CSS0017183 Camellia sinensis var. sinensis HOM05D007398 ORTHO05D004912 2.4e-08 62.8 126 39.7
Glyma.13G308800 Glycine max HOM05D007398 ORTHO05D004912 3.1e-08 62.4 91 50.5
Nn1g03511 Nelumbo nucifera HOM05D007398 ORTHO05D004912 3.1e-08 62.4 120 37.5
BcaB01g04337 Brassica carinata HOM05D009587 ORTHO05D004912 4.1e-08 62.0 81 49.4
Sed0010410 Sechium edule HOM05D007398 ORTHO05D004912 9.1e-08 60.8 119 39.5
Cfa014400 Carpinus fangiana HOM05D007398 ORTHO05D004912 1.5e-07 60.1 107 42.1
Gohir.D01G067500 Gossypium hirsutum HOM05D007398 ORTHO05D004912 2.6e-07 59.3 150 40.0
Gorai.002G089400 Gossypium raimondii HOM05D007398 ORTHO05D004912 2.6e-07 59.3 150 40.0
Haze_12865 Corylus avellana HOM05D007398 ORTHO05D004912 3.4e-07 58.9 143 37.1
Gohir.A01G080300 Gossypium hirsutum HOM05D007398 ORTHO05D004912 4.5e-07 58.5 150 39.3
VMungo1080G0246 Vigna mungo HOM05D007398 ORTHO05D004912 5.9e-07 58.2 94 46.8
Phvul.005G115200 Phaseolus vulgaris HOM05D007398 ORTHO05D004912 7.7e-07 57.8 125 40.0
QL07p015665 Quercus lobata HOM05D007398 ORTHO05D004912 7.7e-07 57.8 127 40.2
Sc16g0005970 Simmondsia chinensis HOM05D007398 ORTHO05D004912 7.7e-07 57.8 133 36.8
Manes.13G070200 Manihot esculenta HOM05D007398 ORTHO05D004912 1.3e-06 57.0 102 43.1
CANSAT64G0797 Cannabis sativa HOM05D007398 ORTHO05D004912 1.7e-06 56.6 136 34.6
Oeu041920.1 Olea europaea HOM05D007398 ORTHO05D004912 1.7e-06 56.6 134 33.6
Lsat_1_v5_gn_9_106500 Lactuca sativa HOM05D007398 ORTHO05D004912 2.2e-06 56.2 135 35.6
RcHm_v2.0_Chr2g0159281 Rosa chinensis HOM05D007398 ORTHO05D004912 2.2e-06 56.2 129 34.1
Actinidia03605 Actinidia chinensis HOM05D007398 ORTHO05D004912 2.9e-06 55.8 117 38.5
Actinidia30523 Actinidia chinensis HOM05D007398 ORTHO05D004912 2.9e-06 55.8 132 36.4
arahy.Tifrunner.gnm1.ann1.TIC55L Arachis hypogaea HOM05D007398 ORTHO05D004912 2.9e-06 55.8 122 39.3
Ciclev10017196m.g Citrus clementina HOM05D007398 ORTHO05D004912 2.9e-06 55.8 104 39.4
Ca_01601_v3 Cicer arietinum L. HOM05D007398 ORTHO05D004912 3.8e-06 55.5 137 35.8
CsaV3_7G003580 Cucumis sativus L. HOM05D007398 ORTHO05D004912 3.8e-06 55.5 124 35.5
Gohir.A04G144600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 3.8e-06 55.5 103 35.9
Prupe.3G217200 Prunus persica HOM05D007398 ORTHO05D004912 3.8e-06 55.5 126 38.9
TWI18G0787 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 3.8e-06 55.5 96 44.8
MELO3C018817.2 Cucumis melo HOM05D007398 ORTHO05D004912 6.5e-06 54.7 122 33.6
FAN02G4350 Fragaria x ananassa HOM05D007398 ORTHO05D004912 6.5e-06 54.7 132 34.1
HanXRQChr03g0069481 Helianthus annuus HOM05D007398 ORTHO05D004912 6.5e-06 54.7 94 39.4
Potri.006G052300 Populus trichocarpa HOM05D007398 ORTHO05D004912 6.5e-06 54.7 126 38.9


User provided reference genes

Program Settings