Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 3.8e-160 568.2 292 100.0
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 2.4e-154 548.9 294 95.9
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 3.1e-154 548.5 294 95.6
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 5.3e-154 547.7 294 95.6
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 6.9e-154 547.4 292 94.5
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 1.1e-151 540.0 294 94.6
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.6e-150 536.2 293 93.2
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 2.1e-150 535.8 293 92.8
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 2.3e-149 532.3 291 93.8
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 1.5e-148 529.6 294 92.9
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 2.6e-145 518.8 282 94.7
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 2.3e-141 505.8 294 87.8
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 1.4e-130 469.9 292 80.5
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 2.9e-128 462.2 292 81.2
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 7.2e-127 457.6 292 80.5
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 7.2e-127 457.6 292 80.5
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.2e-126 456.8 293 79.9
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 4.6e-126 454.9 292 80.1
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 1.3e-125 453.4 292 79.8
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.3e-125 452.6 292 79.8
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 3.9e-125 451.8 292 78.8
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 8.7e-125 450.7 292 79.8
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.5e-124 449.1 292 79.1
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 4.3e-124 448.4 292 79.5
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 4.3e-124 448.4 292 79.1
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 5.7e-124 448.0 292 79.8
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 7.4e-124 447.6 295 76.6
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 1.3e-123 446.8 292 79.1
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.1e-122 443.7 292 77.4
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 1.4e-122 443.4 292 77.4
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 6.9e-122 441.0 285 78.2
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 6.9e-122 441.0 290 78.6
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.5e-121 439.9 290 78.6
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 1.5e-121 439.9 290 78.6
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 1.5e-121 439.9 292 77.7
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.5e-121 439.9 293 76.1
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 2.0e-121 439.5 290 78.6
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 2.0e-121 439.5 293 78.2
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 3.4e-121 438.7 292 78.1
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 1.0e-120 437.2 297 75.4
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 1.3e-120 436.8 292 77.1
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 1.3e-120 436.8 292 77.1
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 1.3e-120 436.8 292 77.1
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 1.7e-120 436.4 290 77.6
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 1.4e-119 433.3 290 77.2
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 1.9e-119 433.0 294 75.9
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 4.2e-119 431.8 296 73.6
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 4.2e-119 431.8 293 75.1
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 1.6e-118 429.9 294 74.5
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 4.6e-118 428.3 284 78.5
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 4.6e-118 428.3 297 74.1
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 6.1e-118 427.9 284 78.5
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 1.0e-117 427.2 284 78.5
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 1.4e-117 426.8 299 74.6
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 3.0e-117 425.6 294 73.8
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 1.1e-116 423.7 290 73.4
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 1.1e-116 423.7 294 74.1
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 2.0e-116 422.9 297 74.4
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 3.3e-116 422.2 297 74.1
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 3.3e-116 422.2 292 72.9
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 9.7e-116 420.6 293 75.1
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 8.2e-115 417.5 294 73.5
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 1.1e-114 417.2 290 74.1
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 1.4e-114 416.8 296 73.3
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 1.4e-114 416.8 294 73.1
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 1.4e-114 416.8 292 74.7
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 1.8e-114 416.4 299 72.2
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 1.8e-114 416.4 297 72.4
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 2.4e-114 416.0 298 72.5
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 2.4e-114 416.0 294 73.1
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 5.3e-114 414.8 290 73.8
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 9.1e-114 414.1 292 72.6
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 9.1e-114 414.1 292 72.6
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 9.1e-114 414.1 292 72.6
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.2e-113 413.7 292 72.3
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 2.0e-113 412.9 290 72.8
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 2.6e-113 412.5 290 74.5
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 5.9e-113 411.4 297 70.7
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 5.9e-113 411.4 292 71.9
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 7.7e-113 411.0 292 71.2
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 1.0e-112 410.6 292 71.9
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.0e-112 410.6 292 71.9
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 1.7e-112 409.8 291 74.6
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 1.7e-112 409.8 292 70.9
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 2.9e-112 409.1 292 71.6
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 3.8e-112 408.7 295 71.5
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 5.0e-112 408.3 290 73.1
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 6.5e-112 407.9 292 72.3
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 6.5e-112 407.9 291 72.9
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 1.1e-111 407.1 293 70.3
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 1.4e-111 406.8 290 71.4
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 1.4e-111 406.8 290 71.4
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 1.9e-111 406.4 292 72.6
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 3.2e-111 405.6 292 71.2
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 3.2e-111 405.6 294 71.8
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 1.2e-110 403.7 296 72.3
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.6e-110 403.3 292 72.9
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 2.1e-110 402.9 292 72.9
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 2.7e-110 402.5 294 72.1
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 2.7e-110 402.5 290 73.1
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 2.7e-110 402.5 292 71.2
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 6.1e-110 401.4 296 72.3
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 1.4e-109 400.2 293 70.6
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 1.4e-109 400.2 292 71.9
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 1.8e-109 399.8 297 70.4
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 3.9e-109 398.7 297 71.4
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 2.0e-108 396.4 285 71.9
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 4.4e-108 395.2 291 72.2
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 7.4e-108 394.4 285 71.2
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 9.7e-108 394.0 279 75.3
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 1.7e-107 393.3 292 70.2
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 2.8e-107 392.5 295 71.2
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 4.8e-107 391.7 283 72.1
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 6.3e-107 391.3 296 70.3
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 1.4e-106 390.2 292 69.9
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.4e-106 390.2 292 71.2
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 1.8e-106 389.8 214 93.0
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 2.4e-106 389.4 294 70.1
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 3.1e-106 389.0 296 68.2
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 1.2e-105 387.1 296 68.2
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 2.0e-105 386.3 294 69.4
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 2.6e-105 386.0 285 69.8
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 1.9e-103 379.8 290 68.3
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 5.5e-103 378.3 296 69.3
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 2.1e-102 376.3 286 69.6
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 2.7e-102 375.9 273 71.1
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 2.6e-100 369.4 296 67.2
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 1.3e-99 367.1 286 66.1
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 1.7e-99 366.7 295 65.4
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 4.8e-99 365.2 291 66.3
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 1.4e-98 363.6 304 64.8
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 5.3e-98 361.7 292 68.2
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 4.7e-94 348.6 303 63.7
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 4.7e-94 348.6 293 65.5
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 6.1e-94 348.2 292 65.8
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.4e-93 347.1 295 64.4
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 1.8e-93 346.7 303 63.0
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 3.0e-93 345.9 295 64.1
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 4.0e-93 345.5 300 61.3
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 1.5e-92 343.6 295 63.1
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 3.1e-90 335.9 295 61.7
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 3.8e-88 328.9 262 65.3
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 6.1e-86 321.6 293 60.8
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 2.0e-84 316.6 247 67.2
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 1.4e-82 310.5 291 59.1
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 3.0e-77 292.7 280 57.1
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 1.1e-74 284.3 292 53.8
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 1.3e-72 277.3 268 56.7
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 6.4e-67 258.5 195 71.8
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 8.9e-61 238.0 143 81.1
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 3.7e-59 232.6 282 46.1
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 3.7e-59 232.6 268 52.6
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 9.2e-58 228.0 278 50.4
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 4.6e-49 199.1 126 73.8
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 3.0e-48 196.4 152 65.8
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 2.8e-46 189.9 167 62.9
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 2.7e-41 173.3 145 65.5
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 3.8e-27 126.3 100 68.0
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 1.3e-24 117.9 332 27.4
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 1.5e-23 114.4 109 59.6
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 2.8e-22 110.2 109 58.7
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 4.0e-21 106.3 71 74.6
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 1.4e-18 97.8 99 59.6
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 5.7e-15 85.9 73 57.5
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 9.3e-10 68.6 86 50.0
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 1.1e-07 61.6 72 51.4


User provided reference genes

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