Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 1.1e-159 566.6 281 100.0
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 2.1e-155 552.4 281 96.8
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 1.1e-153 546.6 281 95.4
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 5.6e-153 544.3 281 95.0
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 1.6e-152 542.7 281 95.4
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 1.6e-152 542.7 281 94.7
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 3.6e-152 541.6 281 94.3
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 6.2e-152 540.8 282 95.4
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 8.1e-152 540.4 281 94.3
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 1.4e-151 539.7 281 94.3
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 2.3e-151 538.9 281 93.6
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 2.3e-151 538.9 281 93.6
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 6.8e-151 537.3 283 95.1
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 2.2e-149 532.3 283 94.0
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 6.9e-143 510.8 282 90.1
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 1.2e-142 510.0 275 92.0
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 2.0e-134 482.6 281 84.7
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 9.3e-132 473.8 282 82.6
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 1.2e-131 473.4 282 83.0
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 1.2e-131 473.4 281 80.8
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 2.3e-130 469.2 283 82.3
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 2.3e-130 469.2 283 82.3
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 3.0e-130 468.8 288 81.2
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 5.1e-130 468.0 282 81.9
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 8.7e-130 467.2 284 81.0
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 8.7e-130 467.2 284 81.0
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 7.4e-129 464.2 283 81.3
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 1.3e-128 463.4 282 81.2
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 3.6e-128 461.8 284 81.7
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 4.0e-127 458.4 283 82.0
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 9.0e-127 457.2 284 81.0
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 9.0e-127 457.2 284 81.0
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 5.5e-124 448.0 275 81.1
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 2.0e-118 429.5 277 77.3
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 9.3e-108 394.0 281 67.6
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 2.8e-104 382.5 286 65.4
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 6.3e-104 381.3 285 64.9
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 4.1e-103 378.6 282 64.9
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 5.3e-103 378.3 278 66.2
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 5.3e-103 378.3 278 65.5
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 6.9e-103 377.9 281 65.8
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 6.9e-103 377.9 283 64.0
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 3.4e-102 375.6 281 65.1
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 4.5e-102 375.2 287 65.2
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 5.9e-102 374.8 281 63.0
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 1.0e-101 374.0 282 64.2
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 1.0e-101 374.0 285 64.9
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 1.3e-101 373.6 285 63.9
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 6.5e-101 371.3 281 63.7
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 1.4e-100 370.2 286 65.7
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 1.9e-100 369.8 286 64.7
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 1.9e-100 369.8 282 63.5
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 2.5e-100 369.4 285 64.2
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 5.5e-100 368.2 283 61.8
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 7.2e-100 367.9 277 64.3
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 9.4e-100 367.5 281 64.4
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 1.2e-99 367.1 281 63.3
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.1e-99 366.3 281 64.4
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 2.1e-99 366.3 277 65.0
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 2.1e-99 366.3 282 64.2
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 3.6e-99 365.5 284 62.0
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.6e-99 365.5 283 65.0
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.6e-99 365.5 284 63.0
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 3.6e-99 365.5 282 65.2
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 4.6e-99 365.2 281 62.6
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 4.6e-99 365.2 284 62.7
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 7.9e-99 364.4 281 63.0
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 2.3e-98 362.8 285 62.1
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.3e-98 362.8 285 62.1
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 3.9e-98 362.1 278 62.9
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 6.7e-98 361.3 281 61.6
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 8.8e-98 360.9 280 61.4
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 1.1e-97 360.5 283 63.6
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 1.5e-97 360.1 282 62.4
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 1.5e-97 360.1 287 61.0
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 1.5e-97 360.1 282 61.3
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 3.3e-97 359.0 280 60.7
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 4.4e-97 358.6 285 61.4
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 4.4e-97 358.6 282 61.0
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 4.4e-97 358.6 278 61.2
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 1.7e-96 356.7 282 62.4
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 2.8e-96 355.9 283 61.8
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 3.7e-96 355.5 279 61.6
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 4.8e-96 355.1 281 61.9
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 4.8e-96 355.1 281 61.9
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 6.3e-96 354.8 282 60.3
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 1.1e-95 354.0 278 61.9
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 1.4e-95 353.6 281 61.2
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 1.8e-95 353.2 242 67.8
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 3.1e-95 352.4 288 60.8
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 3.1e-95 352.4 285 62.1
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 6.9e-95 351.3 283 62.5
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 6.9e-95 351.3 283 61.8
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 9.1e-95 350.9 278 62.6
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 1.2e-94 350.5 283 62.2
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 2.0e-94 349.7 283 62.2
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 2.0e-94 349.7 281 59.8
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 3.4e-94 349.0 278 61.9
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 4.5e-94 348.6 282 61.0
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 5.9e-94 348.2 242 66.5
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 5.9e-94 348.2 288 59.7
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 5.9e-94 348.2 285 58.2
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 5.9e-94 348.2 285 58.2
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 1.3e-93 347.1 285 60.7
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 2.2e-93 346.3 283 59.4
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 2.9e-93 345.9 284 58.5
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 3.8e-93 345.5 282 59.2
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 8.5e-93 344.4 284 61.3
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 8.5e-93 344.4 285 60.4
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 1.1e-92 344.0 287 59.2
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 1.1e-92 344.0 287 59.2
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 1.4e-92 343.6 281 60.1
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 1.4e-92 343.6 282 60.3
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 3.2e-92 342.4 281 58.7
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 3.2e-92 342.4 281 61.9
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 4.2e-92 342.0 285 57.9
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 1.2e-91 340.5 281 59.8
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 1.2e-91 340.5 282 59.6
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 3.6e-91 339.0 311 54.7
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 1.0e-90 337.4 281 59.1
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 1.0e-90 337.4 279 58.4
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 1.4e-90 337.0 286 58.0
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 1.4e-90 337.0 281 57.3
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 3.9e-90 335.5 281 58.7
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 1.1e-89 334.0 280 58.9
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 2.8e-88 329.3 282 58.2
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 2.8e-88 329.3 285 56.5
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 1.4e-87 327.0 281 57.7
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 4.1e-87 325.5 242 64.5
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 7.0e-87 324.7 286 56.6
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 4.5e-86 322.0 242 62.0
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 4.5e-86 322.0 304 53.6
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 1.7e-85 320.1 282 56.7
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 2.2e-85 319.7 279 56.6
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 2.5e-84 316.2 277 56.7
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 3.2e-84 315.8 281 55.5
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 4.2e-84 315.5 281 57.3
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 2.1e-83 313.2 281 54.8
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 7.5e-81 304.7 284 56.3
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.7e-80 302.4 284 55.6
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 8.2e-80 301.2 282 53.9
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 1.8e-79 300.1 258 58.1
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 3.1e-79 299.3 283 52.3
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 1.9e-76 290.0 185 71.9
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 2.7e-75 286.2 274 51.8
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 8.0e-75 284.6 242 56.6
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 1.2e-73 280.8 285 50.5
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.6e-70 270.4 252 55.6
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 2.0e-70 270.0 138 94.2
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 7.7e-70 268.1 138 93.5
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 7.7e-70 268.1 138 93.5
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 3.2e-68 262.7 197 60.9
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 3.6e-67 259.2 246 49.2
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 2.4e-63 246.5 230 51.7
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 3.6e-59 232.6 240 45.4
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 1.2e-57 227.6 286 40.9
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 9.8e-57 224.6 186 57.0
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 5.2e-50 202.2 187 52.9
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 1.7e-45 187.2 164 53.7
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 8.6e-45 184.9 163 56.4
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 2.5e-44 183.3 213 42.7
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 3.6e-43 179.5 168 56.0
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 4.7e-43 179.1 184 54.9
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.8e-42 177.2 250 43.6
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 1.5e-41 174.1 113 76.1
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 7.5e-41 171.8 240 35.0
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 2.1e-27 127.1 74 85.1
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 3.3e-20 103.2 123 39.8
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 3.5e-14 83.2 189 31.7


User provided reference genes

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